RNA–Protein interactions for RNA: ENST00000494623.1

CHMP3-209, Transcript of charged multivesicular body protein 3, human

TSL 2

Gene CHMP3, Length 2,724 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHMP3-209	ENST00000494623	PNMA6E	A0A0J9YXQ4	647 aa		13.83	□□□□□ -0.2
CHMP3-209	ENST00000494623	XPC	Q01831	940 aa	Predicted RBP	13.83	□□□□□ -0.2
CHMP3-209	ENST00000494623	TNPO1	Q92973	898 aa	Known RBP	13.83	□□□□□ -0.2
CHMP3-209	ENST00000494623	PHAX	Q9H814	394 aa	Known RBP	13.83	□□□□□ -0.2
CHMP3-209	ENST00000494623	NWD1	Q149M9	1564 aa		13.83	□□□□□ -0.2
CHMP3-209	ENST00000494623	TSHZ3	Q63HK5	1081 aa		13.82	□□□□□ -0.2
CHMP3-209	ENST00000494623	PDE1A	P54750	535 aa		13.82	□□□□□ -0.2
CHMP3-209	ENST00000494623	ATP8B2	P98198	1209 aa		13.82	□□□□□ -0.2
CHMP3-209	ENST00000494623	LMOD2	Q6P5Q4	547 aa		13.82	□□□□□ -0.2
CHMP3-209	ENST00000494623	LRRFIP2	Q9Y608	721 aa	Known RBP	13.82	□□□□□ -0.2
CHMP3-209	ENST00000494623	LRRC59	Q96AG4	307 aa	Known RBP	13.81	□□□□□ -0.2
CHMP3-209	ENST00000494623	BABAM1	Q9NWV8	329 aa		13.81	□□□□□ -0.2
CHMP3-209	ENST00000494623	SETD1B	Q9UPS6	1966 aa	Known RBP	13.8	□□□□□ -0.2
CHMP3-209	ENST00000494623	RABEP1	Q15276	862 aa		13.8	□□□□□ -0.2
CHMP3-209	ENST00000494623	LRRCC1	Q9C099	1032 aa		13.8	□□□□□ -0.2
CHMP3-209	ENST00000494623	CIZ1	Q9ULV3	898 aa	Predicted RBP	13.8	□□□□□ -0.2
CHMP3-209	ENST00000494623	MARF1	Q9Y4F3	1742 aa	Known RBP	13.8	□□□□□ -0.2
CHMP3-209	ENST00000494623	KCNH5	Q8NCM2	988 aa		13.8	□□□□□ -0.2
CHMP3-209	ENST00000494623	ORAI2	Q96SN7	254 aa		13.8	□□□□□ -0.2
CHMP3-209	ENST00000494623	USP44	Q9H0E7	712 aa		13.8	□□□□□ -0.2
CHMP3-209	ENST00000494623	DDX11L8	A8MPP1	907 aa		13.79	□□□□□ -0.2
CHMP3-209	ENST00000494623	KCNQ3	O43525	872 aa		13.79	□□□□□ -0.2
CHMP3-209	ENST00000494623	RAB3GAP1	Q15042	981 aa		13.79	□□□□□ -0.2
CHMP3-209	ENST00000494623	UBTFL1	P0CB47	393 aa	Predicted RBP	13.79	□□□□□ -0.2
CHMP3-209	ENST00000494623	OSBPL3	Q9H4L5	887 aa		13.79	□□□□□ -0.2
CHMP3-209	ENST00000494623	SOS1	Q07889	1333 aa	Predicted RBP	13.79	□□□□□ -0.2
CHMP3-209	ENST00000494623	L1TD1	Q5T7N2	865 aa	Known RBP	13.78	□□□□□ -0.2
CHMP3-209	ENST00000494623	MPRIP	Q6WCQ1	1025 aa		13.78	□□□□□ -0.2
CHMP3-209	ENST00000494623	ERC2	O15083	957 aa		13.78	□□□□□ -0.2
CHMP3-209	ENST00000494623	REC8	O95072	547 aa		13.78	□□□□□ -0.2
CHMP3-209	ENST00000494623	EIF4A1	P60842	406 aa	Known RBP	13.78	□□□□□ -0.2
CHMP3-209	ENST00000494623	TEF	Q10587	303 aa		13.77	□□□□□ -0.2
CHMP3-209	ENST00000494623	ZNF530	Q6P9A1	599 aa	Predicted RBP	13.77	□□□□□ -0.2
CHMP3-209	ENST00000494623	GBP4	Q96PP9	640 aa		13.77	□□□□□ -0.2
CHMP3-209	ENST00000494623	GOLGA6L3	A6NEY3	463 aa		13.77	□□□□□ -0.21
CHMP3-209	ENST00000494623	GC	P02774	474 aa		13.77	□□□□□ -0.21
CHMP3-209	ENST00000494623	RILPL2	Q969X0	211 aa		13.77	□□□□□ -0.21
CHMP3-209	ENST00000494623	BTBD11	A6QL63	1104 aa		13.77	□□□□□ -0.21
CHMP3-209	ENST00000494623	TRIM6-TRIM34	B2RNG4	842 aa		13.77	□□□□□ -0.21
CHMP3-209	ENST00000494623	MX1	P20591	662 aa		13.77	□□□□□ -0.21
CHMP3-209	ENST00000494623	PLEKHO1	Q53GL0	409 aa	Predicted RBP	13.77	□□□□□ -0.21
CHMP3-209	ENST00000494623	CHPF2	Q9P2E5	772 aa		13.77	□□□□□ -0.21
CHMP3-209	ENST00000494623	LRRC37A3	O60309	1634 aa		13.76	□□□□□ -0.21
CHMP3-209	ENST00000494623	ANXA1	P04083	346 aa		13.76	□□□□□ -0.21
CHMP3-209	ENST00000494623	SSFA2	P28290	1259 aa		13.76	□□□□□ -0.21
CHMP3-209	ENST00000494623	SRCIN1	Q9C0H9	1055 aa		13.76	□□□□□ -0.21
CHMP3-209	ENST00000494623	ANO8	Q9HCE9	1232 aa	Predicted RBP	13.76	□□□□□ -0.21
CHMP3-209	ENST00000494623	IL1RAPL2	Q9NP60	686 aa		13.76	□□□□□ -0.21
CHMP3-209	ENST00000494623	CHD2	O14647	1828 aa	Known RBP	13.76	□□□□□ -0.21
CHMP3-209	ENST00000494623	CEMIP	Q8WUJ3	1361 aa		13.76	□□□□□ -0.21
CHMP3-209	ENST00000494623	AKAP4	Q5JQC9	854 aa		13.75	□□□□□ -0.21
CHMP3-209	ENST00000494623	IBTK	Q9P2D0	1353 aa	Predicted RBP	13.75	□□□□□ -0.21
CHMP3-209	ENST00000494623	PI4KAP2	A4QPH2	592 aa		13.75	□□□□□ -0.21
CHMP3-209	ENST00000494623	PPP1R42	Q7Z4L9	355 aa		13.75	□□□□□ -0.21
CHMP3-209	ENST00000494623	PI4KAP1	Q8N8J0	262 aa		13.75	□□□□□ -0.21
CHMP3-209	ENST00000494623	LTN1	O94822	1766 aa		13.75	□□□□□ -0.21
CHMP3-209	ENST00000494623	ADGRL3	Q9HAR2	1447 aa		13.74	□□□□□ -0.21
CHMP3-209	ENST00000494623	SURF6	O75683	361 aa	Known RBP	13.74	□□□□□ -0.21
CHMP3-209	ENST00000494623	SALL3	Q9BXA9	1300 aa		13.74	□□□□□ -0.21
CHMP3-209	ENST00000494623	ST18	O60284	1047 aa		13.74	□□□□□ -0.21
CHMP3-209	ENST00000494623	ARHGEF25	Q86VW2	580 aa		13.74	□□□□□ -0.21
CHMP3-209	ENST00000494623	NUTM1	Q86Y26	1132 aa		13.74	□□□□□ -0.21
CHMP3-209	ENST00000494623	NFAT5	O94916	1531 aa		13.73	□□□□□ -0.21
CHMP3-209	ENST00000494623	NBPF7	P0C2Y1	421 aa	Predicted RBP	13.73	□□□□□ -0.21
CHMP3-209	ENST00000494623	XRCC6	P12956	609 aa	Known RBP eCLIP	13.73	□□□□□ -0.21
CHMP3-209	ENST00000494623	C1orf141	Q5JVX7	400 aa		13.73	□□□□□ -0.21
CHMP3-209	ENST00000494623	ANKRD24	Q8TF21	1146 aa		13.73	□□□□□ -0.21
CHMP3-209	ENST00000494623	USP54	Q70EL1	1684 aa		13.73	□□□□□ -0.21
CHMP3-209	ENST00000494623	FAM208A	Q9UK61	1670 aa	Known RBP	13.73	□□□□□ -0.21
CHMP3-209	ENST00000494623	SSH3	Q8TE77	659 aa		13.73	□□□□□ -0.21
CHMP3-209	ENST00000494623	DNAAF4	Q8WXU2	420 aa		13.73	□□□□□ -0.21
CHMP3-209	ENST00000494623	FSD2	A1L4K1	749 aa		13.72	□□□□□ -0.21
CHMP3-209	ENST00000494623	RNMT	O43148	476 aa	Known RBP	13.72	□□□□□ -0.21
CHMP3-209	ENST00000494623	SRGAP3	O43295	1099 aa		13.72	□□□□□ -0.21
CHMP3-209	ENST00000494623	AMOT	Q4VCS5	1084 aa		13.72	□□□□□ -0.21
CHMP3-209	ENST00000494623	ESYT1	Q9BSJ8	1104 aa		13.72	□□□□□ -0.21
CHMP3-209	ENST00000494623	BEND3	Q5T5X7	828 aa		13.72	□□□□□ -0.21
CHMP3-209	ENST00000494623	KRT28	Q7Z3Y7	464 aa		13.72	□□□□□ -0.21
CHMP3-209	ENST00000494623	PROSER2	Q86WR7	435 aa	Predicted RBP	13.72	□□□□□ -0.21
CHMP3-209	ENST00000494623	UNC5CL	Q8IV45	518 aa		13.72	□□□□□ -0.21
CHMP3-209	ENST00000494623	AXIN2	Q9Y2T1	843 aa		13.72	□□□□□ -0.21
CHMP3-209	ENST00000494623	HOXB7	P09629	217 aa		13.71	□□□□□ -0.21
CHMP3-209	ENST00000494623	CHML	P26374	656 aa		13.71	□□□□□ -0.21
CHMP3-209	ENST00000494623	NPHP4	O75161	1426 aa	Predicted RBP	13.71	□□□□□ -0.21
CHMP3-209	ENST00000494623	STAP2	Q9UGK3	403 aa		13.71	□□□□□ -0.21
CHMP3-209	ENST00000494623	MAP4K4	O95819	1239 aa	Predicted RBP	13.7	□□□□□ -0.22
CHMP3-209	ENST00000494623	NEK4	P51957	841 aa		13.7	□□□□□ -0.22
CHMP3-209	ENST00000494623	CHMP4A	Q9BY43	222 aa		13.7	□□□□□ -0.22
CHMP3-209	ENST00000494623	ANO2	Q9NQ90	1003 aa		13.7	□□□□□ -0.22
CHMP3-209	ENST00000494623	ZGPAT	Q8N5A5	531 aa	Known RBP	13.7	□□□□□ -0.22
CHMP3-209	ENST00000494623	RAB11FIP3	O75154	756 aa		13.7	□□□□□ -0.22
CHMP3-209	ENST00000494623	BAG4	O95429	457 aa	Known RBP	13.7	□□□□□ -0.22
CHMP3-209	ENST00000494623	ZC3H6	P61129	1189 aa	Known RBP	13.7	□□□□□ -0.22
CHMP3-209	ENST00000494623	POLA2	Q14181	598 aa		13.7	□□□□□ -0.22
CHMP3-209	ENST00000494623	SKOR2	Q2VWA4	1001 aa	Predicted RBP	13.7	□□□□□ -0.22
CHMP3-209	ENST00000494623	RHPN1	Q8TCX5	695 aa		13.7	□□□□□ -0.22
CHMP3-209	ENST00000494623	PANK2	Q9BZ23	570 aa		13.7	□□□□□ -0.22
CHMP3-209	ENST00000494623	DBF4	Q9UBU7	674 aa	Predicted RBP	13.7	□□□□□ -0.22
CHMP3-209	ENST00000494623	PXDNL	A1KZ92	1463 aa		13.69	□□□□□ -0.22
CHMP3-209	ENST00000494623	CACNA1F	O60840	1977 aa		13.69	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 71.1 ms