RNA–Protein interactions for RNA: ENST00000494518.1

SKA1-205, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2

Gene SKA1, Length 746 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-205ENST00000494518 ITPK1Q13572 414 aa17.41■□□□□ 0.38
SKA1-205ENST00000494518 IFNL2Q8IZJ0 200 aa17.41■□□□□ 0.38
SKA1-205ENST00000494518 PANK3Q9H999 370 aa17.41■□□□□ 0.38
SKA1-205ENST00000494518 C1QTNF8P60827 252 aa17.4■□□□□ 0.38
SKA1-205ENST00000494518 EIF4G2P78344 907 aaKnown RBP eCLIP17.4■□□□□ 0.38
SKA1-205ENST00000494518 CLSPNQ9HAW4 1339 aa17.4■□□□□ 0.38
SKA1-205ENST00000494518 GNPATO15228 680 aa17.39■□□□□ 0.37
SKA1-205ENST00000494518 GRIN3BO60391 1043 aa17.39■□□□□ 0.37
SKA1-205ENST00000494518 ATP6V1AP38606 617 aa17.39■□□□□ 0.37
SKA1-205ENST00000494518 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.39■□□□□ 0.37
SKA1-205ENST00000494518 ATG3Q9NT62 314 aa17.38■□□□□ 0.37
SKA1-205ENST00000494518 CD2APQ9Y5K6 639 aa17.38■□□□□ 0.37
SKA1-205ENST00000494518 GIGYF1O75420 1035 aaPredicted RBP17.37■□□□□ 0.37
SKA1-205ENST00000494518 HMGB2P26583 209 aaKnown RBP17.37■□□□□ 0.37
SKA1-205ENST00000494518 IGSF1Q8N6C5 1336 aa17.37■□□□□ 0.37
SKA1-205ENST00000494518 COL5A3P25940 1745 aaPredicted RBP17.36■□□□□ 0.37
SKA1-205ENST00000494518 SSFA2P28290 1259 aa17.36■□□□□ 0.37
SKA1-205ENST00000494518 MYH14Q7Z406 1995 aaKnown RBP17.35■□□□□ 0.37
SKA1-205ENST00000494518 AEBP1Q8IUX7 1158 aa17.35■□□□□ 0.37
SKA1-205ENST00000494518 RBM42Q9BTD8 480 aaKnown RBP17.35■□□□□ 0.37
SKA1-205ENST00000494518 N4BP2Q86UW6 1770 aaPredicted RBP17.35■□□□□ 0.37
SKA1-205ENST00000494518 KDM6AO15550 1401 aaPredicted RBP17.34■□□□□ 0.37
SKA1-205ENST00000494518 KDRP35968 1356 aa17.34■□□□□ 0.37
SKA1-205ENST00000494518 ZNF530Q6P9A1 599 aaPredicted RBP17.34■□□□□ 0.37
SKA1-205ENST00000494518 MORC1Q86VD1 984 aa17.34■□□□□ 0.37
SKA1-205ENST00000494518 CCER1Q8TC90 406 aaPredicted RBP17.34■□□□□ 0.37
SKA1-205ENST00000494518 SLC4A9Q96Q91 983 aa17.34■□□□□ 0.37
SKA1-205ENST00000494518 ATP10DQ9P241 1426 aa17.34■□□□□ 0.37
SKA1-205ENST00000494518 VIRMAQ69YN4 1812 aaKnown RBP17.33■□□□□ 0.37
SKA1-205ENST00000494518 C4AP0C0L4 1744 aa17.33■□□□□ 0.36
SKA1-205ENST00000494518 PLEKHO1Q53GL0 409 aaPredicted RBP17.32■□□□□ 0.36
SKA1-205ENST00000494518 ZNF526Q8TF50 670 aaPredicted RBP17.32■□□□□ 0.36
SKA1-205ENST00000494518 CICQ96RK0 1608 aaPredicted RBP17.32■□□□□ 0.36
SKA1-205ENST00000494518 KIF13BQ9NQT8 1826 aa17.31■□□□□ 0.36
SKA1-205ENST00000494518 KIAA1551Q9HCM1 1747 aa17.31■□□□□ 0.36
SKA1-205ENST00000494518 MMP10P09238 476 aa17.31■□□□□ 0.36
SKA1-205ENST00000494518 ZNF831Q5JPB2 1677 aa17.31■□□□□ 0.36
SKA1-205ENST00000494518 SCN11AQ9UI33 1791 aa17.3■□□□□ 0.36
SKA1-205ENST00000494518 ERVV-2B6SEH9 535 aa17.3■□□□□ 0.36
SKA1-205ENST00000494518 CABP4P57796 275 aa17.3■□□□□ 0.36
SKA1-205ENST00000494518 DCAF5Q96JK2 942 aa17.3■□□□□ 0.36
SKA1-205ENST00000494518 CEP350Q5VT06 3117 aa17.3■□□□□ 0.36
SKA1-205ENST00000494518 HSP90AB1P08238 724 aaKnown RBP17.29■□□□□ 0.36
SKA1-205ENST00000494518 SULT6B1Q6IMI4 303 aa17.29■□□□□ 0.36
SKA1-205ENST00000494518 RTCBQ9Y3I0 505 aaKnown RBP17.29■□□□□ 0.36
SKA1-205ENST00000494518 TJP1Q07157 1748 aa17.29■□□□□ 0.36
SKA1-205ENST00000494518 PLEKHG2Q9H7P9 1386 aa17.28■□□□□ 0.36
SKA1-205ENST00000494518 PTCD1O75127 700 aaKnown RBP17.28■□□□□ 0.36
SKA1-205ENST00000494518 MTHFSP49914 203 aa17.28■□□□□ 0.36
SKA1-205ENST00000494518 C1orf141Q5JVX7 400 aa17.28■□□□□ 0.36
SKA1-205ENST00000494518 TRAPPC3LQ5T215 181 aa17.28■□□□□ 0.36
SKA1-205ENST00000494518 KNSTRNQ9Y448 316 aa17.28■□□□□ 0.36
SKA1-205ENST00000494518 PXDNLA1KZ92 1463 aa17.27■□□□□ 0.36
SKA1-205ENST00000494518 C1QBPQ07021 282 aaKnown RBP17.27■□□□□ 0.36
SKA1-205ENST00000494518 AMOTQ4VCS5 1084 aa17.27■□□□□ 0.36
SKA1-205ENST00000494518 ARHGEF1Q92888 912 aaKnown RBP17.27■□□□□ 0.36
SKA1-205ENST00000494518 ADCY9O60503 1353 aa17.27■□□□□ 0.35
SKA1-205ENST00000494518 GPBP1L1Q9HC44 474 aaPredicted RBP17.26■□□□□ 0.35
SKA1-205ENST00000494518 CNTNAP4Q9C0A0 1308 aa17.25■□□□□ 0.35
SKA1-205ENST00000494518 NFATC2IPQ8NCF5 419 aa17.25■□□□□ 0.35
SKA1-205ENST00000494518 BRCA1P38398 1863 aaKnown RBP17.24■□□□□ 0.35
SKA1-205ENST00000494518 IL13P35225 146 aa17.24■□□□□ 0.35
SKA1-205ENST00000494518 RFC4P35249 363 aa17.24■□□□□ 0.35
SKA1-205ENST00000494518 C10orf71Q711Q0 1435 aa17.23■□□□□ 0.35
SKA1-205ENST00000494518 A0A0G2JLW4 131 aa17.23■□□□□ 0.35
SKA1-205ENST00000494518 RPS6KA4O75676 772 aa17.23■□□□□ 0.35
SKA1-205ENST00000494518 GYS1P13807 737 aa17.23■□□□□ 0.35
SKA1-205ENST00000494518 CNGB1Q14028 1251 aaPredicted RBP17.23■□□□□ 0.35
SKA1-205ENST00000494518 RC3H1Q5TC82 1133 aaKnown RBP17.23■□□□□ 0.35
SKA1-205ENST00000494518 SRP68Q9UHB9 627 aaKnown RBP17.23■□□□□ 0.35
SKA1-205ENST00000494518 KIF7Q2M1P5 1343 aa17.22■□□□□ 0.35
SKA1-205ENST00000494518 HMOX1P09601 288 aa17.22■□□□□ 0.35
SKA1-205ENST00000494518 CRKLP46109 303 aaKnown RBP17.22■□□□□ 0.35
SKA1-205ENST00000494518 AMER1Q5JTC6 1135 aaPredicted RBP17.22■□□□□ 0.35
SKA1-205ENST00000494518 NLGN1Q8N2Q7 840 aa17.22■□□□□ 0.35
SKA1-205ENST00000494518 BCS1LQ9Y276 419 aa17.22■□□□□ 0.35
SKA1-205ENST00000494518 PARP3Q9Y6F1 533 aa17.21■□□□□ 0.35
SKA1-205ENST00000494518 DPEP1P16444 411 aa17.2■□□□□ 0.34
SKA1-205ENST00000494518 CCDC87Q9NVE4 849 aa17.2■□□□□ 0.34
SKA1-205ENST00000494518 CC2D1BQ5T0F9 858 aaKnown RBP17.19■□□□□ 0.34
SKA1-205ENST00000494518 LGR6Q9HBX8 967 aa17.19■□□□□ 0.34
SKA1-205ENST00000494518 ADAMTS7Q9UKP4 1686 aa17.19■□□□□ 0.34
SKA1-205ENST00000494518 ARFGEF1Q9Y6D6 1849 aa17.19■□□□□ 0.34
SKA1-205ENST00000494518 SLC39A6Q13433 755 aa17.18■□□□□ 0.34
SKA1-205ENST00000494518 FKBP8Q14318 412 aa17.18■□□□□ 0.34
SKA1-205ENST00000494518 AKAP4Q5JQC9 854 aa17.18■□□□□ 0.34
SKA1-205ENST00000494518 DNAJC10Q8IXB1 793 aa17.18■□□□□ 0.34
SKA1-205ENST00000494518 FCHSD2O94868 740 aa17.17■□□□□ 0.34
SKA1-205ENST00000494518 TGFB2P61812 414 aa17.17■□□□□ 0.34
SKA1-205ENST00000494518 AFDNP55196 1824 aaKnown RBP17.17■□□□□ 0.34
SKA1-205ENST00000494518 DDR1Q08345 913 aa17.16■□□□□ 0.34
SKA1-205ENST00000494518 INTS5Q6P9B9 1019 aaKnown RBP17.16■□□□□ 0.34
SKA1-205ENST00000494518 ARHGAP27Q6ZUM4 889 aa17.16■□□□□ 0.34
SKA1-205ENST00000494518 SLC52A2Q9HAB3 445 aa17.16■□□□□ 0.34
SKA1-205ENST00000494518 USP42Q9H9J4 1324 aaKnown RBP17.16■□□□□ 0.34
SKA1-205ENST00000494518 RNMTO43148 476 aaKnown RBP17.15■□□□□ 0.34
SKA1-205ENST00000494518 MRC1P22897 1456 aa17.15■□□□□ 0.34
SKA1-205ENST00000494518 KCPQ6ZWJ8 1503 aa17.15■□□□□ 0.34
SKA1-205ENST00000494518 MTHFSDQ2M296 383 aaKnown RBP17.14■□□□□ 0.33
SKA1-205ENST00000494518 UBR2Q8IWV8 1755 aa17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms