RNA–Protein interactions for RNA: ENST00000494054.1

UFD1-210, Transcript of ubiquitin recognition factor in ER associated degradation 1, humanhuman

TSL 5

Gene UFD1, Length 588 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UFD1-210ENST00000494054 AK7Q96M32 723 aa13.25□□□□□ -0.29
UFD1-210ENST00000494054 SLC4A9Q96Q91 983 aa13.25□□□□□ -0.29
UFD1-210ENST00000494054 NPC1L1Q9UHC9 1359 aa13.24□□□□□ -0.29
UFD1-210ENST00000494054 HMOX1P09601 288 aa13.24□□□□□ -0.29
UFD1-210ENST00000494054 YY1P25490 414 aa13.24□□□□□ -0.29
UFD1-210ENST00000494054 KLHL34Q8N239 644 aa13.24□□□□□ -0.29
UFD1-210ENST00000494054 FLAD1Q8NFF5 587 aa13.24□□□□□ -0.29
UFD1-210ENST00000494054 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.23□□□□□ -0.29
UFD1-210ENST00000494054 DIAPH1O60610 1272 aaKnown RBP13.23□□□□□ -0.29
UFD1-210ENST00000494054 PHF14O94880 888 aa13.23□□□□□ -0.29
UFD1-210ENST00000494054 HMGB2P26583 209 aaKnown RBP13.23□□□□□ -0.29
UFD1-210ENST00000494054 CABP4P57796 275 aa13.23□□□□□ -0.29
UFD1-210ENST00000494054 C1orf141Q5JVX7 400 aa13.23□□□□□ -0.29
UFD1-210ENST00000494054 NFATC2IPQ8NCF5 419 aa13.22□□□□□ -0.29
UFD1-210ENST00000494054 NLGN2Q8NFZ4 835 aa13.22□□□□□ -0.29
UFD1-210ENST00000494054 RBM42Q9BTD8 480 aaKnown RBP13.22□□□□□ -0.29
UFD1-210ENST00000494054 UBR3Q6ZT12 1888 aa13.21□□□□□ -0.29
UFD1-210ENST00000494054 GNPATO15228 680 aa13.21□□□□□ -0.29
UFD1-210ENST00000494054 SSFA2P28290 1259 aa13.2□□□□□ -0.3
UFD1-210ENST00000494054 MTHFSDQ2M296 383 aaKnown RBP13.2□□□□□ -0.3
UFD1-210ENST00000494054 AKAP4Q5JQC9 854 aa13.2□□□□□ -0.3
UFD1-210ENST00000494054 LGR6Q9HBX8 967 aa13.2□□□□□ -0.3
UFD1-210ENST00000494054 COL3A1P02461 1466 aaPredicted RBP13.2□□□□□ -0.3
UFD1-210ENST00000494054 PTCD1O75127 700 aaKnown RBP13.19□□□□□ -0.3
UFD1-210ENST00000494054 GPR162Q16538 588 aa13.18□□□□□ -0.3
UFD1-210ENST00000494054 U2SURPO15042 1029 aaKnown RBP13.17□□□□□ -0.3
UFD1-210ENST00000494054 RNMTO43148 476 aaKnown RBP13.17□□□□□ -0.3
UFD1-210ENST00000494054 RC3H1Q5TC82 1133 aaKnown RBP13.17□□□□□ -0.3
UFD1-210ENST00000494054 SCN11AQ9UI33 1791 aa13.17□□□□□ -0.3
UFD1-210ENST00000494054 ZNF831Q5JPB2 1677 aa13.16□□□□□ -0.3
UFD1-210ENST00000494054 PELP1Q8IZL8 1130 aaKnown RBP13.16□□□□□ -0.3
UFD1-210ENST00000494054 SLC52A2Q9HAB3 445 aa13.16□□□□□ -0.3
UFD1-210ENST00000494054 RTCBQ9Y3I0 505 aaKnown RBP13.16□□□□□ -0.3
UFD1-210ENST00000494054 CD2APQ9Y5K6 639 aa13.16□□□□□ -0.3
UFD1-210ENST00000494054 CNTNAP4Q9C0A0 1308 aa13.15□□□□□ -0.3
UFD1-210ENST00000494054 RPS6KA4O75676 772 aa13.15□□□□□ -0.3
UFD1-210ENST00000494054 YBX3P16989 372 aaKnown RBP eCLIP13.15□□□□□ -0.34e-15■■□□□ 11.4
UFD1-210ENST00000494054 TRAPPC3LQ5T215 181 aa13.15□□□□□ -0.3
UFD1-210ENST00000494054 ARHGEF1Q92888 912 aaKnown RBP13.15□□□□□ -0.3
UFD1-210ENST00000494054 COL5A3P25940 1745 aaPredicted RBP13.15□□□□□ -0.3
UFD1-210ENST00000494054 PPP2R1AP30153 589 aa13.14□□□□□ -0.31
UFD1-210ENST00000494054 SLC39A6Q13433 755 aa13.14□□□□□ -0.31
UFD1-210ENST00000494054 UTRNP46939 3433 aa13.13□□□□□ -0.31
UFD1-210ENST00000494054 MYH14Q7Z406 1995 aaKnown RBP13.13□□□□□ -0.31
UFD1-210ENST00000494054 MRC1P22897 1456 aa13.13□□□□□ -0.31
UFD1-210ENST00000494054 CRKLP46109 303 aaKnown RBP13.13□□□□□ -0.31
UFD1-210ENST00000494054 ADAMTS7Q9UKP4 1686 aa13.12□□□□□ -0.31
UFD1-210ENST00000494054 MMP10P09238 476 aa13.12□□□□□ -0.31
UFD1-210ENST00000494054 ADRA2BP18089 450 aa13.12□□□□□ -0.31
UFD1-210ENST00000494054 INTS5Q6P9B9 1019 aaKnown RBP13.12□□□□□ -0.31
UFD1-210ENST00000494054 DNAJC10Q8IXB1 793 aa13.12□□□□□ -0.31
UFD1-210ENST00000494054 IL17REQ8NFR9 667 aa13.12□□□□□ -0.31
UFD1-210ENST00000494054 PHACTR3Q96KR7 559 aa13.12□□□□□ -0.31
UFD1-210ENST00000494054 CFAP53Q96M91 514 aa13.12□□□□□ -0.31
UFD1-210ENST00000494054 TJP1Q07157 1748 aa13.12□□□□□ -0.31
UFD1-210ENST00000494054 GYS1P13807 737 aa13.11□□□□□ -0.31
UFD1-210ENST00000494054 RFC4P35249 363 aa13.11□□□□□ -0.31
UFD1-210ENST00000494054 NLGN1Q8N2Q7 840 aa13.11□□□□□ -0.31
UFD1-210ENST00000494054 ZNF784Q8NCA9 323 aaPredicted RBP13.11□□□□□ -0.31
UFD1-210ENST00000494054 RSPH6AQ9H0K4 717 aa13.11□□□□□ -0.31
UFD1-210ENST00000494054 PRKAR2BP31323 418 aa13.1□□□□□ -0.31
UFD1-210ENST00000494054 GAS2L2Q8NHY3 880 aa13.1□□□□□ -0.31
UFD1-210ENST00000494054 SRP68Q9UHB9 627 aaKnown RBP13.1□□□□□ -0.31
UFD1-210ENST00000494054 VIRMAQ69YN4 1812 aaKnown RBP13.1□□□□□ -0.31
UFD1-210ENST00000494054 CICQ96RK0 1608 aaPredicted RBP13.1□□□□□ -0.31
UFD1-210ENST00000494054 CHD4Q14839 1912 aa13.09□□□□□ -0.31
UFD1-210ENST00000494054 KCPQ6ZWJ8 1503 aa13.09□□□□□ -0.31
UFD1-210ENST00000494054 GNAT3A8MTJ3 354 aa13.09□□□□□ -0.31
UFD1-210ENST00000494054 GRIN3BO60391 1043 aa13.09□□□□□ -0.31
UFD1-210ENST00000494054 CYP19A1P11511 503 aaPredicted RBP13.09□□□□□ -0.31
UFD1-210ENST00000494054 WWC3Q9ULE0 1092 aa13.09□□□□□ -0.31
UFD1-210ENST00000494054 U2AF1L5P0DN76 240 aaPredicted RBP13.08□□□□□ -0.32
UFD1-210ENST00000494054 U2AF1Q01081 240 aaKnown RBP eCLIP13.08□□□□□ -0.321e-8■■■□□ 18.7
UFD1-210ENST00000494054 CCDC87Q9NVE4 849 aa13.08□□□□□ -0.32
UFD1-210ENST00000494054 NUDCQ9Y266 331 aa13.08□□□□□ -0.32
UFD1-210ENST00000494054 C4AP0C0L4 1744 aa13.08□□□□□ -0.32
UFD1-210ENST00000494054 TEFQ10587 303 aa13.07□□□□□ -0.32
UFD1-210ENST00000494054 FKBP8Q14318 412 aa13.07□□□□□ -0.32
UFD1-210ENST00000494054 SOS1Q07889 1333 aaPredicted RBP13.07□□□□□ -0.32
UFD1-210ENST00000494054 USP42Q9H9J4 1324 aaKnown RBP13.07□□□□□ -0.32
UFD1-210ENST00000494054 VSIG10Q8N0Z9 540 aa13.06□□□□□ -0.32
UFD1-210ENST00000494054 ZNF496Q96IT1 587 aaPredicted RBP13.06□□□□□ -0.32
UFD1-210ENST00000494054 ZBTB1Q9Y2K1 713 aa13.06□□□□□ -0.32
UFD1-210ENST00000494054 CEMIPQ8WUJ3 1361 aa13.06□□□□□ -0.32
UFD1-210ENST00000494054 KCNQ3O43525 872 aa13.05□□□□□ -0.32
UFD1-210ENST00000494054 FCHSD2O94868 740 aa13.05□□□□□ -0.32
UFD1-210ENST00000494054 DDR1Q08345 913 aa13.05□□□□□ -0.32
UFD1-210ENST00000494054 ZNF790Q6PG37 636 aa13.05□□□□□ -0.32
UFD1-210ENST00000494054 TTC5Q8N0Z6 440 aa13.05□□□□□ -0.32
UFD1-210ENST00000494054 PARP3Q9Y6F1 533 aa13.05□□□□□ -0.32
UFD1-210ENST00000494054 C10orf71Q711Q0 1435 aa13.05□□□□□ -0.32
UFD1-210ENST00000494054 UBR2Q8IWV8 1755 aa13.04□□□□□ -0.32
UFD1-210ENST00000494054 A0A0G2JLW4 131 aa13.04□□□□□ -0.32
UFD1-210ENST00000494054 USPL1Q5W0Q7 1092 aa13.04□□□□□ -0.32
UFD1-210ENST00000494054 SIPA1L3O60292 1781 aaPredicted RBP13.04□□□□□ -0.32
UFD1-210ENST00000494054 PXDNLA1KZ92 1463 aa13.04□□□□□ -0.32
UFD1-210ENST00000494054 KIAA1551Q9HCM1 1747 aa13.03□□□□□ -0.32
UFD1-210ENST00000494054 DPEP1P16444 411 aa13.03□□□□□ -0.32
UFD1-210ENST00000494054 CANXP27824 592 aaKnown RBP13.03□□□□□ -0.32
UFD1-210ENST00000494054 TM4SF1P30408 202 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms