RNA–Protein interactions for RNA: ENST00000491967.1

SMARCB1-207, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 1 (best)

Gene SMARCB1, Length 605 nt, Biotype processed transcript, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-207ENST00000491967 LINC00116Q8NCU8 138 aa11.45□□□□□ -0.58
SMARCB1-207ENST00000491967 SLC4A9Q96Q91 983 aa11.45□□□□□ -0.58
SMARCB1-207ENST00000491967 CD2APQ9Y5K6 639 aa11.44□□□□□ -0.58
SMARCB1-207ENST00000491967 COL5A3P25940 1745 aaPredicted RBP11.43□□□□□ -0.58
SMARCB1-207ENST00000491967 MYH14Q7Z406 1995 aaKnown RBP11.43□□□□□ -0.58
SMARCB1-207ENST00000491967 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.43□□□□□ -0.58
SMARCB1-207ENST00000491967 MTHFSP49914 203 aa11.43□□□□□ -0.58
SMARCB1-207ENST00000491967 RC3H1Q5TC82 1133 aaKnown RBP11.43□□□□□ -0.58
SMARCB1-207ENST00000491967 NLGN2Q8NFZ4 835 aa11.43□□□□□ -0.58
SMARCB1-207ENST00000491967 SCN11AQ9UI33 1791 aa11.43□□□□□ -0.58
SMARCB1-207ENST00000491967 CICQ96RK0 1608 aaPredicted RBP11.42□□□□□ -0.58
SMARCB1-207ENST00000491967 ATP6V1AP38606 617 aa11.42□□□□□ -0.58
SMARCB1-207ENST00000491967 SULT6B1Q6IMI4 303 aa11.42□□□□□ -0.58
SMARCB1-207ENST00000491967 ZNF530Q6P9A1 599 aaPredicted RBP11.42□□□□□ -0.58
SMARCB1-207ENST00000491967 AK7Q96M32 723 aa11.42□□□□□ -0.58
SMARCB1-207ENST00000491967 ADAMTS7Q9UKP4 1686 aa11.41□□□□□ -0.58
SMARCB1-207ENST00000491967 MSH5O43196 834 aa11.41□□□□□ -0.58
SMARCB1-207ENST00000491967 ZNF784Q8NCA9 323 aaPredicted RBP11.41□□□□□ -0.58
SMARCB1-207ENST00000491967 CNTNAP4Q9C0A0 1308 aa11.4□□□□□ -0.58
SMARCB1-207ENST00000491967 MSL1Q68DK7 614 aa11.4□□□□□ -0.58
SMARCB1-207ENST00000491967 SMIM5Q71RC9 77 aa11.4□□□□□ -0.58
SMARCB1-207ENST00000491967 GOLGB1Q14789 3259 aaKnown RBP11.4□□□□□ -0.58
SMARCB1-207ENST00000491967 KIF13BQ9NQT8 1826 aa11.39□□□□□ -0.59
SMARCB1-207ENST00000491967 COL3A1P02461 1466 aaPredicted RBP11.39□□□□□ -0.59
SMARCB1-207ENST00000491967 YBX3P16989 372 aaKnown RBP eCLIP11.39□□□□□ -0.593e-8■■■□□ 18.7
SMARCB1-207ENST00000491967 ADRA2BP18089 450 aa11.39□□□□□ -0.59
SMARCB1-207ENST00000491967 CABP4P57796 275 aa11.39□□□□□ -0.59
SMARCB1-207ENST00000491967 GPR162Q16538 588 aa11.39□□□□□ -0.59
SMARCB1-207ENST00000491967 AKAP4Q5JQC9 854 aa11.39□□□□□ -0.59
SMARCB1-207ENST00000491967 NFATC2IPQ8NCF5 419 aa11.39□□□□□ -0.59
SMARCB1-207ENST00000491967 VIRMAQ69YN4 1812 aaKnown RBP11.39□□□□□ -0.59
SMARCB1-207ENST00000491967 MRC1P22897 1456 aa11.38□□□□□ -0.59
SMARCB1-207ENST00000491967 GNPATO15228 680 aa11.38□□□□□ -0.59
SMARCB1-207ENST00000491967 GRIN3BO60391 1043 aa11.38□□□□□ -0.59
SMARCB1-207ENST00000491967 RPS6KA4O75676 772 aa11.38□□□□□ -0.59
SMARCB1-207ENST00000491967 C1orf141Q5JVX7 400 aa11.38□□□□□ -0.59
SMARCB1-207ENST00000491967 DIAPH1O60610 1272 aaKnown RBP11.37□□□□□ -0.59
SMARCB1-207ENST00000491967 PHF14O94880 888 aa11.37□□□□□ -0.59
SMARCB1-207ENST00000491967 TRAPPC3LQ5T215 181 aa11.37□□□□□ -0.59
SMARCB1-207ENST00000491967 SLC52A2Q9HAB3 445 aa11.37□□□□□ -0.59
SMARCB1-207ENST00000491967 LGR6Q9HBX8 967 aa11.37□□□□□ -0.59
SMARCB1-207ENST00000491967 RTCBQ9Y3I0 505 aaKnown RBP11.37□□□□□ -0.59
SMARCB1-207ENST00000491967 TJP1Q07157 1748 aa11.37□□□□□ -0.59
SMARCB1-207ENST00000491967 KIAA1551Q9HCM1 1747 aa11.36□□□□□ -0.59
SMARCB1-207ENST00000491967 RNMTO43148 476 aaKnown RBP11.36□□□□□ -0.59
SMARCB1-207ENST00000491967 CC2D1BQ5T0F9 858 aaKnown RBP11.36□□□□□ -0.59
SMARCB1-207ENST00000491967 NLGN1Q8N2Q7 840 aa11.36□□□□□ -0.59
SMARCB1-207ENST00000491967 ARHGEF1Q92888 912 aaKnown RBP11.36□□□□□ -0.59
SMARCB1-207ENST00000491967 GYS1P13807 737 aa11.35□□□□□ -0.59
SMARCB1-207ENST00000491967 MTHFSDQ2M296 383 aaKnown RBP11.35□□□□□ -0.59
SMARCB1-207ENST00000491967 KLHL34Q8N239 644 aa11.35□□□□□ -0.59
SMARCB1-207ENST00000491967 RBM42Q9BTD8 480 aaKnown RBP11.35□□□□□ -0.59
SMARCB1-207ENST00000491967 C4AP0C0L4 1744 aa11.35□□□□□ -0.59
SMARCB1-207ENST00000491967 MMP10P09238 476 aa11.34□□□□□ -0.59
SMARCB1-207ENST00000491967 HMOX1P09601 288 aa11.34□□□□□ -0.59
SMARCB1-207ENST00000491967 INTS5Q6P9B9 1019 aaKnown RBP11.34□□□□□ -0.59
SMARCB1-207ENST00000491967 UBR2Q8IWV8 1755 aa11.33□□□□□ -0.59
SMARCB1-207ENST00000491967 PTCD1O75127 700 aaKnown RBP11.33□□□□□ -0.6
SMARCB1-207ENST00000491967 CRKLP46109 303 aaKnown RBP11.33□□□□□ -0.6
SMARCB1-207ENST00000491967 KCPQ6ZWJ8 1503 aa11.33□□□□□ -0.6
SMARCB1-207ENST00000491967 BRCA1P38398 1863 aaKnown RBP11.32□□□□□ -0.6
SMARCB1-207ENST00000491967 SIPA1L3O60292 1781 aaPredicted RBP11.32□□□□□ -0.6
SMARCB1-207ENST00000491967 SENP3-EIF4A1A0A087X0R7 540 aa11.32□□□□□ -0.6
SMARCB1-207ENST00000491967 TGFB2P61812 414 aa11.32□□□□□ -0.6
SMARCB1-207ENST00000491967 VSIG10Q8N0Z9 540 aa11.32□□□□□ -0.6
SMARCB1-207ENST00000491967 C10orf71Q711Q0 1435 aa11.32□□□□□ -0.6
SMARCB1-207ENST00000491967 PXDNLA1KZ92 1463 aa11.32□□□□□ -0.6
SMARCB1-207ENST00000491967 ADCY9O60503 1353 aa11.31□□□□□ -0.6
SMARCB1-207ENST00000491967 CYP19A1P11511 503 aaPredicted RBP11.31□□□□□ -0.6
SMARCB1-207ENST00000491967 RFC4P35249 363 aa11.31□□□□□ -0.6
SMARCB1-207ENST00000491967 IL17REQ8NFR9 667 aa11.31□□□□□ -0.6
SMARCB1-207ENST00000491967 USP42Q9H9J4 1324 aaKnown RBP11.31□□□□□ -0.6
SMARCB1-207ENST00000491967 CEMIPQ8WUJ3 1361 aa11.3□□□□□ -0.6
SMARCB1-207ENST00000491967 TM4SF1P30408 202 aa11.3□□□□□ -0.6
SMARCB1-207ENST00000491967 SLC39A6Q13433 755 aa11.3□□□□□ -0.6
SMARCB1-207ENST00000491967 DNAJC10Q8IXB1 793 aa11.3□□□□□ -0.6
SMARCB1-207ENST00000491967 PELP1Q8IZL8 1130 aaKnown RBP11.3□□□□□ -0.6
SMARCB1-207ENST00000491967 CCDC87Q9NVE4 849 aa11.3□□□□□ -0.6
SMARCB1-207ENST00000491967 SOS1Q07889 1333 aaPredicted RBP11.3□□□□□ -0.6
SMARCB1-207ENST00000491967 N4BP2Q86UW6 1770 aaPredicted RBP11.29□□□□□ -0.6
SMARCB1-207ENST00000491967 KCNA3P22001 575 aa11.29□□□□□ -0.6
SMARCB1-207ENST00000491967 GAS2L2Q8NHY3 880 aa11.29□□□□□ -0.6
SMARCB1-207ENST00000491967 RSPH6AQ9H0K4 717 aa11.29□□□□□ -0.6
SMARCB1-207ENST00000491967 GNAT3A8MTJ3 354 aa11.28□□□□□ -0.6
SMARCB1-207ENST00000491967 PPP2R1AP30153 589 aa11.28□□□□□ -0.6
SMARCB1-207ENST00000491967 C1QTNF8P60827 252 aa11.28□□□□□ -0.6
SMARCB1-207ENST00000491967 DDR1Q08345 913 aa11.28□□□□□ -0.6
SMARCB1-207ENST00000491967 FKBP8Q14318 412 aa11.28□□□□□ -0.6
SMARCB1-207ENST00000491967 PHACTR3Q96KR7 559 aa11.28□□□□□ -0.6
SMARCB1-207ENST00000491967 FCHSD2O94868 740 aa11.27□□□□□ -0.61
SMARCB1-207ENST00000491967 SRP68Q9UHB9 627 aaKnown RBP11.27□□□□□ -0.61
SMARCB1-207ENST00000491967 ARFGEF1Q9Y6D6 1849 aa11.27□□□□□ -0.61
SMARCB1-207ENST00000491967 NRXN2Q9P2S2 1712 aa11.26□□□□□ -0.61
SMARCB1-207ENST00000491967 A0A0G2JLW4 131 aa11.26□□□□□ -0.61
SMARCB1-207ENST00000491967 POLRMTO00411 1230 aaKnown RBP11.26□□□□□ -0.61
SMARCB1-207ENST00000491967 U2SURPO15042 1029 aaKnown RBP11.26□□□□□ -0.61
SMARCB1-207ENST00000491967 EIF5P55010 431 aaKnown RBP11.26□□□□□ -0.61
SMARCB1-207ENST00000491967 ZNF790Q6PG37 636 aa11.26□□□□□ -0.61
SMARCB1-207ENST00000491967 ZNF496Q96IT1 587 aaPredicted RBP11.26□□□□□ -0.61
SMARCB1-207ENST00000491967 CFAP53Q96M91 514 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms