RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 CCDC9Q9Y3X0 531 aaKnown RBP13.57□□□□□ -0.24
USP4-214ENST00000491791 ABCC6O95255 1503 aa13.57□□□□□ -0.24
USP4-214ENST00000491791 CEMIPQ8WUJ3 1361 aa13.57□□□□□ -0.24
USP4-214ENST00000491791 MAP3K5Q99683 1374 aa13.57□□□□□ -0.24
USP4-214ENST00000491791 ALS2Q96Q42 1657 aa13.56□□□□□ -0.24
USP4-214ENST00000491791 NUCB1Q02818 461 aa13.56□□□□□ -0.24
USP4-214ENST00000491791 CACNA1FO60840 1977 aa13.56□□□□□ -0.24
USP4-214ENST00000491791 PLEKHG5O94827 1062 aa13.55□□□□□ -0.24
USP4-214ENST00000491791 VPS72Q15906 364 aa13.55□□□□□ -0.24
USP4-214ENST00000491791 ERICH6Q7L0X2 663 aa13.55□□□□□ -0.24
USP4-214ENST00000491791 LMO7Q8WWI1 1683 aa13.55□□□□□ -0.24
USP4-214ENST00000491791 PAK3O75914 559 aaPredicted RBP13.54□□□□□ -0.24
USP4-214ENST00000491791 SEPT12Q8IYM1 358 aa13.54□□□□□ -0.24
USP4-214ENST00000491791 CHMP4AQ9BY43 222 aa13.54□□□□□ -0.24
USP4-214ENST00000491791 GLI3P10071 1580 aa13.54□□□□□ -0.24
USP4-214ENST00000491791 SOX12O15370 315 aa13.53□□□□□ -0.24
USP4-214ENST00000491791 GCP02774 474 aa13.53□□□□□ -0.24
USP4-214ENST00000491791 IL17REQ8NFR9 667 aa13.53□□□□□ -0.24
USP4-214ENST00000491791 CABLES1Q8TDN4 633 aa13.53□□□□□ -0.24
USP4-214ENST00000491791 ADAMTS7Q9UKP4 1686 aa13.53□□□□□ -0.24
USP4-214ENST00000491791 N4BP2Q86UW6 1770 aaPredicted RBP13.53□□□□□ -0.24
USP4-214ENST00000491791 A0A0G2JS52 829 aa13.52□□□□□ -0.25
USP4-214ENST00000491791 ELL2O00472 640 aaPredicted RBP13.52□□□□□ -0.25
USP4-214ENST00000491791 TAF7Q15545 349 aaPredicted RBP13.52□□□□□ -0.25
USP4-214ENST00000491791 RPAP2Q8IXW5 612 aaPredicted RBP13.52□□□□□ -0.25
USP4-214ENST00000491791 TSPYL4Q9UJ04 414 aa13.52□□□□□ -0.25
USP4-214ENST00000491791 NWD2Q9ULI1 1742 aa13.51□□□□□ -0.25
USP4-214ENST00000491791 HOXB7P09629 217 aa13.51□□□□□ -0.25
USP4-214ENST00000491791 AMOTQ4VCS5 1084 aa13.51□□□□□ -0.25
USP4-214ENST00000491791 NUTM2GQ5VZR2 741 aa13.51□□□□□ -0.25
USP4-214ENST00000491791 KRT27Q7Z3Y8 459 aa13.51□□□□□ -0.25
USP4-214ENST00000491791 KDM3BQ7LBC6 1761 aa13.5□□□□□ -0.25
USP4-214ENST00000491791 FAM208AQ9UK61 1670 aaKnown RBP13.5□□□□□ -0.25
USP4-214ENST00000491791 ONECUT3O60422 494 aaPredicted RBP13.5□□□□□ -0.25
USP4-214ENST00000491791 NBPF6Q5VWK0 638 aa13.5□□□□□ -0.25
USP4-214ENST00000491791 CHD1LQ86WJ1 897 aa13.5□□□□□ -0.25
USP4-214ENST00000491791 SIRT2Q8IXJ6 389 aa13.5□□□□□ -0.25
USP4-214ENST00000491791 NBPF4Q96M43 638 aa13.5□□□□□ -0.25
USP4-214ENST00000491791 PXDNLA1KZ92 1463 aa13.49□□□□□ -0.25
USP4-214ENST00000491791 ATP10DQ9P241 1426 aa13.49□□□□□ -0.25
USP4-214ENST00000491791 KRT24Q2M2I5 525 aa13.49□□□□□ -0.25
USP4-214ENST00000491791 CCDC30Q5VVM6 783 aa13.49□□□□□ -0.25
USP4-214ENST00000491791 DEFB132Q7Z7B7 95 aa13.49□□□□□ -0.25
USP4-214ENST00000491791 ANKRD44Q8N8A2 993 aa13.49□□□□□ -0.25
USP4-214ENST00000491791 DCTPP1Q9H773 170 aa13.49□□□□□ -0.25
USP4-214ENST00000491791 PLCH1Q4KWH8 1693 aa13.49□□□□□ -0.25
USP4-214ENST00000491791 SLC4A2P04920 1241 aa13.48□□□□□ -0.25
USP4-214ENST00000491791 CCT4P50991 539 aaKnown RBP13.48□□□□□ -0.25
USP4-214ENST00000491791 PLEKHO1Q53GL0 409 aaPredicted RBP13.48□□□□□ -0.25
USP4-214ENST00000491791 AKAP4Q5JQC9 854 aa13.48□□□□□ -0.25
USP4-214ENST00000491791 NPM2Q86SE8 214 aaKnown RBP13.48□□□□□ -0.25
USP4-214ENST00000491791 COL18A1P39060 1754 aa13.48□□□□□ -0.25
USP4-214ENST00000491791 BAG6P46379 1132 aa13.47□□□□□ -0.25
USP4-214ENST00000491791 BMP2KLQ5H9B9 411 aa13.47□□□□□ -0.25
USP4-214ENST00000491791 BTG4Q9NY30 223 aa13.47□□□□□ -0.25
USP4-214ENST00000491791 BRWD3Q6RI45 1802 aa13.47□□□□□ -0.25
USP4-214ENST00000491791 RGPD2P0DJD1 1756 aa13.46□□□□□ -0.25
USP4-214ENST00000491791 TBC1D32Q96NH3 1257 aa13.46□□□□□ -0.25
USP4-214ENST00000491791 CRYBG1Q9Y4K1 1723 aa13.46□□□□□ -0.25
USP4-214ENST00000491791 HEG1Q9ULI3 1381 aa13.45□□□□□ -0.26
USP4-214ENST00000491791 ABCA3Q99758 1704 aa13.45□□□□□ -0.26
USP4-214ENST00000491791 EIF5BO60841 1220 aaKnown RBP13.45□□□□□ -0.26
USP4-214ENST00000491791 SEC24BO95487 1268 aa13.45□□□□□ -0.26
USP4-214ENST00000491791 FAM98CQ17RN3 349 aaKnown RBP13.45□□□□□ -0.26
USP4-214ENST00000491791 STK31Q9BXU1 1019 aa13.45□□□□□ -0.26
USP4-214ENST00000491791 UPF2Q9HAU5 1272 aaKnown RBP13.45□□□□□ -0.26
USP4-214ENST00000491791 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.45□□□□□ -0.263e-7■□□□□ 11.2
USP4-214ENST00000491791 IBTKQ9P2D0 1353 aaPredicted RBP13.45□□□□□ -0.26
USP4-214ENST00000491791 MIS18AQ9NYP9 233 aa13.44□□□□□ -0.26
USP4-214ENST00000491791 SIPA1L3O60292 1781 aaPredicted RBP13.44□□□□□ -0.26
USP4-214ENST00000491791 CPDO75976 1380 aa13.44□□□□□ -0.26
USP4-214ENST00000491791 ERBB3P21860 1342 aa13.43□□□□□ -0.26
USP4-214ENST00000491791 COL14A1Q05707 1796 aaKnown RBP13.43□□□□□ -0.26
USP4-214ENST00000491791 EIF4A1P60842 406 aaKnown RBP13.43□□□□□ -0.26
USP4-214ENST00000491791 CEP85Q6P2H3 762 aa13.43□□□□□ -0.26
USP4-214ENST00000491791 G2E3Q7L622 706 aa13.43□□□□□ -0.26
USP4-214ENST00000491791 ANKRD24Q8TF21 1146 aa13.43□□□□□ -0.26
USP4-214ENST00000491791 LTV1Q96GA3 475 aaPredicted RBP13.43□□□□□ -0.26
USP4-214ENST00000491791 PRDM11Q9NQV5 511 aa13.43□□□□□ -0.26
USP4-214ENST00000491791 USP35Q9P2H5 1018 aa13.43□□□□□ -0.26
USP4-214ENST00000491791 FLIIQ13045 1269 aa13.42□□□□□ -0.26
USP4-214ENST00000491791 RNMTO43148 476 aaKnown RBP13.41□□□□□ -0.26
USP4-214ENST00000491791 HMMRO75330 724 aa13.41□□□□□ -0.26
USP4-214ENST00000491791 GNAI3P08754 354 aa13.41□□□□□ -0.26
USP4-214ENST00000491791 LNPKQ9C0E8 428 aa13.41□□□□□ -0.26
USP4-214ENST00000491791 SPATA31A5Q5VU36 1347 aa13.4□□□□□ -0.26
USP4-214ENST00000491791 SPATA31A7Q8IWB4 1347 aa13.4□□□□□ -0.26
USP4-214ENST00000491791 NRAPQ86VF7 1730 aa13.4□□□□□ -0.26
USP4-214ENST00000491791 ANKRD45Q5TZF3 282 aa13.4□□□□□ -0.26
USP4-214ENST00000491791 ZNF530Q6P9A1 599 aaPredicted RBP13.4□□□□□ -0.26
USP4-214ENST00000491791 USHBP1Q8N6Y0 703 aa13.4□□□□□ -0.26
USP4-214ENST00000491791 MEIS3Q99687 375 aa13.4□□□□□ -0.26
USP4-214ENST00000491791 AXIN2Q9Y2T1 843 aa13.4□□□□□ -0.26
USP4-214ENST00000491791 RBM25P49756 843 aaKnown RBP13.39□□□□□ -0.27
USP4-214ENST00000491791 BECN1Q14457 450 aa13.39□□□□□ -0.27
USP4-214ENST00000491791 C1orf115Q9H7X2 142 aa13.39□□□□□ -0.27
USP4-214ENST00000491791 LGR6Q9HBX8 967 aa13.39□□□□□ -0.27
USP4-214ENST00000491791 RGPD5Q99666 1765 aa13.38□□□□□ -0.27
USP4-214ENST00000491791 MRC1P22897 1456 aa13.38□□□□□ -0.27
USP4-214ENST00000491791 PSDA5PKW4 1024 aaPredicted RBP13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms