RNA–Protein interactions for RNA: ENST00000490831.1

COL27A1-206, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 3

Gene COL27A1, Length 666 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-206ENST00000490831 MRC1P22897 1456 aa20.43■□□□□ 0.86
COL27A1-206ENST00000490831 PPP1R1BQ9UD71 204 aaPredicted RBP20.43■□□□□ 0.86
COL27A1-206ENST00000490831 NUDCQ9Y266 331 aa20.42■□□□□ 0.86
COL27A1-206ENST00000490831 RNMTO43148 476 aaKnown RBP20.41■□□□□ 0.86
COL27A1-206ENST00000490831 ITPK1Q13572 414 aa20.41■□□□□ 0.86
COL27A1-206ENST00000490831 COL23A1Q86Y22 540 aaPredicted RBP20.41■□□□□ 0.86
COL27A1-206ENST00000490831 NFATC2IPQ8NCF5 419 aa20.41■□□□□ 0.86
COL27A1-206ENST00000490831 LINC00116Q8NCU8 138 aa20.41■□□□□ 0.86
COL27A1-206ENST00000490831 FLAD1Q8NFF5 587 aa20.41■□□□□ 0.86
COL27A1-206ENST00000490831 SLC4A9Q96Q91 983 aa20.41■□□□□ 0.86
COL27A1-206ENST00000490831 RSPH6AQ9H0K4 717 aa20.41■□□□□ 0.86
COL27A1-206ENST00000490831 ZEB1P37275 1124 aaPredicted RBP20.4■□□□□ 0.86
COL27A1-206ENST00000490831 ATP6V1AP38606 617 aa20.4■□□□□ 0.86
COL27A1-206ENST00000490831 SLC52A2Q9HAB3 445 aa20.4■□□□□ 0.86
COL27A1-206ENST00000490831 LGR6Q9HBX8 967 aa20.4■□□□□ 0.86
COL27A1-206ENST00000490831 UBR3Q6ZT12 1888 aa20.39■□□□□ 0.86
COL27A1-206ENST00000490831 GAS2L2Q8NHY3 880 aa20.39■□□□□ 0.85
COL27A1-206ENST00000490831 AK7Q96M32 723 aa20.38■□□□□ 0.85
COL27A1-206ENST00000490831 VIRMAQ69YN4 1812 aaKnown RBP20.37■□□□□ 0.85
COL27A1-206ENST00000490831 FCHSD2O94868 740 aa20.37■□□□□ 0.85
COL27A1-206ENST00000490831 PRKAR2BP31323 418 aa20.37■□□□□ 0.85
COL27A1-206ENST00000490831 DDX10Q13206 875 aaKnown RBP20.37■□□□□ 0.85
COL27A1-206ENST00000490831 AMIGO3Q86WK7 504 aa20.37■□□□□ 0.85
COL27A1-206ENST00000490831 CICQ96RK0 1608 aaPredicted RBP20.37■□□□□ 0.85
COL27A1-206ENST00000490831 MAP3K5Q99683 1374 aa20.36■□□□□ 0.85
COL27A1-206ENST00000490831 U2AF1L5P0DN76 240 aaPredicted RBP20.36■□□□□ 0.85
COL27A1-206ENST00000490831 SSFA2P28290 1259 aa20.36■□□□□ 0.85
COL27A1-206ENST00000490831 U2AF1Q01081 240 aaKnown RBP eCLIP20.36■□□□□ 0.85
COL27A1-206ENST00000490831 RALBP1Q15311 655 aa20.36■□□□□ 0.85
COL27A1-206ENST00000490831 PHACTR3Q96KR7 559 aa20.36■□□□□ 0.85
COL27A1-206ENST00000490831 ARXQ96QS3 562 aa20.36■□□□□ 0.85
COL27A1-206ENST00000490831 COL5A3P25940 1745 aaPredicted RBP20.36■□□□□ 0.85
COL27A1-206ENST00000490831 RC3H1Q5TC82 1133 aaKnown RBP20.35■□□□□ 0.85
COL27A1-206ENST00000490831 RBM42Q9BTD8 480 aaKnown RBP20.35■□□□□ 0.85
COL27A1-206ENST00000490831 GNAT3A8MTJ3 354 aa20.34■□□□□ 0.85
COL27A1-206ENST00000490831 CNTNAP4Q9C0A0 1308 aa20.33■□□□□ 0.85
COL27A1-206ENST00000490831 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20.33■□□□□ 0.85
COL27A1-206ENST00000490831 POLD1P28340 1107 aa20.33■□□□□ 0.85
COL27A1-206ENST00000490831 FHDC1Q9C0D6 1143 aaPredicted RBP20.33■□□□□ 0.85
COL27A1-206ENST00000490831 CEMIPQ8WUJ3 1361 aa20.33■□□□□ 0.84
COL27A1-206ENST00000490831 GNPATO15228 680 aa20.32■□□□□ 0.84
COL27A1-206ENST00000490831 MSH5O43196 834 aa20.32■□□□□ 0.84
COL27A1-206ENST00000490831 PTCD1O75127 700 aaKnown RBP20.32■□□□□ 0.84
COL27A1-206ENST00000490831 IL17REQ8NFR9 667 aa20.32■□□□□ 0.84
COL27A1-206ENST00000490831 SYT17Q9BSW7 474 aa20.32■□□□□ 0.84
COL27A1-206ENST00000490831 KCPQ6ZWJ8 1503 aa20.31■□□□□ 0.84
COL27A1-206ENST00000490831 TJP1Q07157 1748 aa20.3■□□□□ 0.84
COL27A1-206ENST00000490831 MYH14Q7Z406 1995 aaKnown RBP20.3■□□□□ 0.84
COL27A1-206ENST00000490831 SIPA1L3O60292 1781 aaPredicted RBP20.29■□□□□ 0.84
COL27A1-206ENST00000490831 PHF14O94880 888 aa20.29■□□□□ 0.84
COL27A1-206ENST00000490831 SMIM5Q71RC9 77 aa20.29■□□□□ 0.84
COL27A1-206ENST00000490831 UBR2Q8IWV8 1755 aa20.29■□□□□ 0.84
COL27A1-206ENST00000490831 RPS6KA4O75676 772 aa20.28■□□□□ 0.84
COL27A1-206ENST00000490831 ADRA2BP18089 450 aa20.28■□□□□ 0.84
COL27A1-206ENST00000490831 SLC39A6Q13433 755 aa20.28■□□□□ 0.84
COL27A1-206ENST00000490831 RTCBQ9Y3I0 505 aaKnown RBP20.28■□□□□ 0.84
COL27A1-206ENST00000490831 MSL1Q68DK7 614 aa20.27■□□□□ 0.84
COL27A1-206ENST00000490831 VSIG10Q8N0Z9 540 aa20.27■□□□□ 0.84
COL27A1-206ENST00000490831 MYBBP1AQ9BQG0 1328 aaKnown RBP20.27■□□□□ 0.83
COL27A1-206ENST00000490831 HTATSF1O43719 755 aaKnown RBP20.26■□□□□ 0.83
COL27A1-206ENST00000490831 CRKLP46109 303 aaKnown RBP20.26■□□□□ 0.83
COL27A1-206ENST00000490831 TEFQ10587 303 aa20.26■□□□□ 0.83
COL27A1-206ENST00000490831 PLEKHF1Q96S99 279 aa20.26■□□□□ 0.83
COL27A1-206ENST00000490831 TRAPPC3LQ5T215 181 aa20.25■□□□□ 0.83
COL27A1-206ENST00000490831 INTS5Q6P9B9 1019 aaKnown RBP20.24■□□□□ 0.83
COL27A1-206ENST00000490831 DNAJC10Q8IXB1 793 aa20.24■□□□□ 0.83
COL27A1-206ENST00000490831 ARHGEF1Q92888 912 aaKnown RBP20.24■□□□□ 0.83
COL27A1-206ENST00000490831 CYP19A1P11511 503 aaPredicted RBP20.23■□□□□ 0.83
COL27A1-206ENST00000490831 ZNF790Q6PG37 636 aa20.23■□□□□ 0.83
COL27A1-206ENST00000490831 TTC5Q8N0Z6 440 aa20.22■□□□□ 0.83
COL27A1-206ENST00000490831 PNNQ9H307 717 aaKnown RBP20.22■□□□□ 0.83
COL27A1-206ENST00000490831 RTF1Q92541 710 aaKnown RBP20.21■□□□□ 0.83
COL27A1-206ENST00000490831 PRKRIP1Q9H875 184 aaPredicted RBP20.21■□□□□ 0.83
COL27A1-206ENST00000490831 CCDC87Q9NVE4 849 aa20.21■□□□□ 0.83
COL27A1-206ENST00000490831 C4AP0C0L4 1744 aa20.2■□□□□ 0.82
COL27A1-206ENST00000490831 DCAF8L1A6NGE4 600 aa20.2■□□□□ 0.82
COL27A1-206ENST00000490831 NEFMP07197 916 aa20.2■□□□□ 0.82
COL27A1-206ENST00000490831 ZNF496Q96IT1 587 aaPredicted RBP20.2■□□□□ 0.82
COL27A1-206ENST00000490831 HEG1Q9ULI3 1381 aa20.2■□□□□ 0.82
COL27A1-206ENST00000490831 MCM10Q7L590 875 aa20.19■□□□□ 0.82
COL27A1-206ENST00000490831 CD2APQ9Y5K6 639 aa20.19■□□□□ 0.82
COL27A1-206ENST00000490831 BTBD11A6QL63 1104 aa20.18■□□□□ 0.82
COL27A1-206ENST00000490831 GYS1P13807 737 aa20.18■□□□□ 0.82
COL27A1-206ENST00000490831 RFC4P35249 363 aa20.18■□□□□ 0.82
COL27A1-206ENST00000490831 NFE2L2Q16236 605 aa20.18■□□□□ 0.82
COL27A1-206ENST00000490831 NLGN1Q8N2Q7 840 aa20.18■□□□□ 0.82
COL27A1-206ENST00000490831 SOS1Q07889 1333 aaPredicted RBP20.18■□□□□ 0.82
COL27A1-206ENST00000490831 DLG5Q8TDM6 1919 aa20.17■□□□□ 0.82
COL27A1-206ENST00000490831 DCTN1Q14203 1278 aa20.17■□□□□ 0.82
COL27A1-206ENST00000490831 NLGN2Q8NFZ4 835 aa20.17■□□□□ 0.82
COL27A1-206ENST00000490831 FMNL2Q96PY5 1086 aa20.17■□□□□ 0.82
COL27A1-206ENST00000490831 TEX13AQ9BXU3 409 aaPredicted RBP20.17■□□□□ 0.82
COL27A1-206ENST00000490831 KLHL34Q8N239 644 aa20.16■□□□□ 0.82
COL27A1-206ENST00000490831 ZBTB1Q9Y2K1 713 aa20.16■□□□□ 0.82
COL27A1-206ENST00000490831 USP42Q9H9J4 1324 aaKnown RBP20.16■□□□□ 0.82
COL27A1-206ENST00000490831 KCNQ3O43525 872 aa20.15■□□□□ 0.82
COL27A1-206ENST00000490831 STARD3NLO95772 234 aa20.15■□□□□ 0.82
COL27A1-206ENST00000490831 MMP10P09238 476 aa20.15■□□□□ 0.82
COL27A1-206ENST00000490831 MAPK8IP3Q9UPT6 1336 aa20.15■□□□□ 0.82
COL27A1-206ENST00000490831 UTRNP46939 3433 aa20.14■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms