RNA–Protein interactions for RNA: ENST00000489215.5

PTPN18-213, Transcript of protein tyrosine phosphatase, non-receptor type 18, human

TSL 4

Gene PTPN18, Length 460 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN18-213	ENST00000489215	ATP6V1A	P38606	617 aa		32.1	■■■□□ 2.73
PTPN18-213	ENST00000489215	NFATC2IP	Q8NCF5	419 aa		32.1	■■■□□ 2.73
PTPN18-213	ENST00000489215	AK7	Q96M32	723 aa		32.09	■■■□□ 2.73
PTPN18-213	ENST00000489215	FCHSD2	O94868	740 aa		32.08	■■■□□ 2.73
PTPN18-213	ENST00000489215	U2AF1L5	P0DN76	240 aa	Predicted RBP	32.08	■■■□□ 2.73
PTPN18-213	ENST00000489215	U2AF1	Q01081	240 aa	Known RBP eCLIP	32.08	■■■□□ 2.73
PTPN18-213	ENST00000489215	PTGER2	P43116	358 aa		32.07	■■■□□ 2.72
PTPN18-213	ENST00000489215	ZNF831	Q5JPB2	1677 aa		32.07	■■■□□ 2.72
PTPN18-213	ENST00000489215	C4B	P0C0L5	1744 aa		32.06	■■■□□ 2.72
PTPN18-213	ENST00000489215	TUBGCP6	Q96RT7	1819 aa		32.06	■■■□□ 2.72
PTPN18-213	ENST00000489215	RNMT	O43148	476 aa	Known RBP	32.06	■■■□□ 2.72
PTPN18-213	ENST00000489215	SLC52A2	Q9HAB3	445 aa		32.06	■■■□□ 2.72
PTPN18-213	ENST00000489215	RBM42	Q9BTD8	480 aa	Known RBP	32.05	■■■□□ 2.72
PTPN18-213	ENST00000489215	MSH5	O43196	834 aa		32.04	■■■□□ 2.72
PTPN18-213	ENST00000489215	RSPH6A	Q9H0K4	717 aa		32.04	■■■□□ 2.72
PTPN18-213	ENST00000489215	GNAT3	A8MTJ3	354 aa		32.03	■■■□□ 2.72
PTPN18-213	ENST00000489215	POLD1	P28340	1107 aa		32.03	■■■□□ 2.72
PTPN18-213	ENST00000489215	PRKAR2B	P31323	418 aa		32.03	■■■□□ 2.72
PTPN18-213	ENST00000489215	LGR6	Q9HBX8	967 aa		32.03	■■■□□ 2.72
PTPN18-213	ENST00000489215	COL23A1	Q86Y22	540 aa	Predicted RBP	32.02	■■■□□ 2.72
PTPN18-213	ENST00000489215	SGIP1	Q9BQI5	828 aa		32.02	■■■□□ 2.72
PTPN18-213	ENST00000489215	VIRMA	Q69YN4	1812 aa	Known RBP	32.02	■■■□□ 2.72
PTPN18-213	ENST00000489215	NEFM	P07197	916 aa		32.01	■■■□□ 2.71
PTPN18-213	ENST00000489215	MAP3K5	Q99683	1374 aa		32	■■■□□ 2.71
PTPN18-213	ENST00000489215	SSFA2	P28290	1259 aa		32	■■■□□ 2.71
PTPN18-213	ENST00000489215	ITPK1	Q13572	414 aa		32	■■■□□ 2.71
PTPN18-213	ENST00000489215	LINC00116	Q8NCU8	138 aa		32	■■■□□ 2.71
PTPN18-213	ENST00000489215	ADAMTS7	Q9UKP4	1686 aa		31.99	■■■□□ 2.71
PTPN18-213	ENST00000489215	ARX	Q96QS3	562 aa		31.99	■■■□□ 2.71
PTPN18-213	ENST00000489215	PNN	Q9H307	717 aa	Known RBP	31.99	■■■□□ 2.71
PTPN18-213	ENST00000489215	MRC1	P22897	1456 aa		31.98	■■■□□ 2.71
PTPN18-213	ENST00000489215	RC3H1	Q5TC82	1133 aa	Known RBP	31.98	■■■□□ 2.71
PTPN18-213	ENST00000489215	DCAF8L1	A6NGE4	600 aa		31.97	■■■□□ 2.71
PTPN18-213	ENST00000489215	PTCD1	O75127	700 aa	Known RBP	31.96	■■■□□ 2.71
PTPN18-213	ENST00000489215	COL24A1	Q17RW2	1714 aa		31.96	■■■□□ 2.71
PTPN18-213	ENST00000489215	UBR3	Q6ZT12	1888 aa		31.95	■■■□□ 2.71
PTPN18-213	ENST00000489215	TEF	Q10587	303 aa		31.95	■■■□□ 2.71
PTPN18-213	ENST00000489215	PHACTR3	Q96KR7	559 aa		31.95	■■■□□ 2.71
PTPN18-213	ENST00000489215	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	31.93	■■■□□ 2.7
PTPN18-213	ENST00000489215	GNPAT	O15228	680 aa		31.93	■■■□□ 2.7
PTPN18-213	ENST00000489215	SLC4A9	Q96Q91	983 aa		31.93	■■■□□ 2.7
PTPN18-213	ENST00000489215	RTCB	Q9Y3I0	505 aa	Known RBP	31.93	■■■□□ 2.7
PTPN18-213	ENST00000489215	CNTNAP4	Q9C0A0	1308 aa		31.93	■■■□□ 2.7
PTPN18-213	ENST00000489215	RTF1	Q92541	710 aa	Known RBP	31.92	■■■□□ 2.7
PTPN18-213	ENST00000489215	MYBBP1A	Q9BQG0	1328 aa	Known RBP	31.92	■■■□□ 2.7
PTPN18-213	ENST00000489215	IL17RE	Q8NFR9	667 aa		31.91	■■■□□ 2.7
PTPN18-213	ENST00000489215	HTATSF1	O43719	755 aa	Known RBP	31.9	■■■□□ 2.7
PTPN18-213	ENST00000489215	PHF14	O94880	888 aa		31.9	■■■□□ 2.7
PTPN18-213	ENST00000489215	ADRA2B	P18089	450 aa		31.9	■■■□□ 2.7
PTPN18-213	ENST00000489215	COL5A3	P25940	1745 aa	Predicted RBP	31.89	■■■□□ 2.7
PTPN18-213	ENST00000489215	TRAPPC3L	Q5T215	181 aa		31.89	■■■□□ 2.7
PTPN18-213	ENST00000489215	TTC5	Q8N0Z6	440 aa		31.89	■■■□□ 2.7
PTPN18-213	ENST00000489215	SYT17	Q9BSW7	474 aa		31.89	■■■□□ 2.7
PTPN18-213	ENST00000489215	FHDC1	Q9C0D6	1143 aa	Predicted RBP	31.89	■■■□□ 2.7
PTPN18-213	ENST00000489215	CIC	Q96RK0	1608 aa	Predicted RBP	31.89	■■■□□ 2.7
PTPN18-213	ENST00000489215	VSIG10	Q8N0Z9	540 aa		31.88	■■■□□ 2.69
PTPN18-213	ENST00000489215	RPS6KA4	O75676	772 aa		31.87	■■■□□ 2.69
PTPN18-213	ENST00000489215	CEMIP	Q8WUJ3	1361 aa		31.86	■■■□□ 2.69
PTPN18-213	ENST00000489215	SLC39A6	Q13433	755 aa		31.85	■■■□□ 2.69
PTPN18-213	ENST00000489215	CRKL	P46109	303 aa	Known RBP	31.82	■■■□□ 2.68
PTPN18-213	ENST00000489215	ZNF790	Q6PG37	636 aa		31.82	■■■□□ 2.68
PTPN18-213	ENST00000489215	AMIGO3	Q86WK7	504 aa		31.82	■■■□□ 2.68
PTPN18-213	ENST00000489215	MAPK8IP3	Q9UPT6	1336 aa		31.81	■■■□□ 2.68
PTPN18-213	ENST00000489215	MSL1	Q68DK7	614 aa		31.81	■■■□□ 2.68
PTPN18-213	ENST00000489215	TEX13A	Q9BXU3	409 aa	Predicted RBP	31.81	■■■□□ 2.68
PTPN18-213	ENST00000489215	TJP1	Q07157	1748 aa		31.8	■■■□□ 2.68
PTPN18-213	ENST00000489215	RFC4	P35249	363 aa		31.8	■■■□□ 2.68
PTPN18-213	ENST00000489215	PRKRIP1	Q9H875	184 aa	Predicted RBP	31.8	■■■□□ 2.68
PTPN18-213	ENST00000489215	SIPA1L3	O60292	1781 aa	Predicted RBP	31.8	■■■□□ 2.68
PTPN18-213	ENST00000489215	PLEKHF1	Q96S99	279 aa		31.79	■■■□□ 2.68
PTPN18-213	ENST00000489215	MYH14	Q7Z406	1995 aa	Known RBP	31.79	■■■□□ 2.68
PTPN18-213	ENST00000489215	KCP	Q6ZWJ8	1503 aa		31.79	■■■□□ 2.68
PTPN18-213	ENST00000489215	UBR2	Q8IWV8	1755 aa		31.79	■■■□□ 2.68
PTPN18-213	ENST00000489215	BTBD11	A6QL63	1104 aa		31.78	■■■□□ 2.68
PTPN18-213	ENST00000489215	DNAJC10	Q8IXB1	793 aa		31.78	■■■□□ 2.68
PTPN18-213	ENST00000489215	NLGN1	Q8N2Q7	840 aa		31.78	■■■□□ 2.68
PTPN18-213	ENST00000489215	ARHGEF1	Q92888	912 aa	Known RBP	31.78	■■■□□ 2.68
PTPN18-213	ENST00000489215	ZNF316	A6NFI3	1004 aa	Predicted RBP	31.77	■■■□□ 2.68
PTPN18-213	ENST00000489215	STARD3NL	O95772	234 aa		31.77	■■■□□ 2.68
PTPN18-213	ENST00000489215	CCDC87	Q9NVE4	849 aa		31.77	■■■□□ 2.68
PTPN18-213	ENST00000489215	SMIM5	Q71RC9	77 aa		31.76	■■■□□ 2.67
PTPN18-213	ENST00000489215	KLHL34	Q8N239	644 aa		31.76	■■■□□ 2.67
PTPN18-213	ENST00000489215	FMNL2	Q96PY5	1086 aa		31.76	■■■□□ 2.67
PTPN18-213	ENST00000489215	CYP19A1	P11511	503 aa	Predicted RBP	31.75	■■■□□ 2.67
PTPN18-213	ENST00000489215	NFE2L2	Q16236	605 aa		31.74	■■■□□ 2.67
PTPN18-213	ENST00000489215	INTS5	Q6P9B9	1019 aa	Known RBP	31.74	■■■□□ 2.67
PTPN18-213	ENST00000489215	MCM10	Q7L590	875 aa		31.74	■■■□□ 2.67
PTPN18-213	ENST00000489215	ZNF496	Q96IT1	587 aa	Predicted RBP	31.73	■■■□□ 2.67
PTPN18-213	ENST00000489215	CD2AP	Q9Y5K6	639 aa		31.73	■■■□□ 2.67
PTPN18-213	ENST00000489215	HEG1	Q9ULI3	1381 aa		31.72	■■■□□ 2.67
PTPN18-213	ENST00000489215	WDR43	Q15061	677 aa	Known RBP eCLIP	31.72	■■■□□ 2.67
PTPN18-213	ENST00000489215	TAF7	Q15545	349 aa	Predicted RBP	31.71	■■■□□ 2.67
PTPN18-213	ENST00000489215	PNISR	Q8TF01	805 aa	Known RBP	31.7	■■■□□ 2.67
PTPN18-213	ENST00000489215	DLG5	Q8TDM6	1919 aa		31.7	■■■□□ 2.67
PTPN18-213	ENST00000489215	GYS1	P13807	737 aa		31.67	■■■□□ 2.66
PTPN18-213	ENST00000489215	DCTN1	Q14203	1278 aa		31.67	■■■□□ 2.66
PTPN18-213	ENST00000489215	ZPR1	O75312	459 aa		31.66	■■■□□ 2.66
PTPN18-213	ENST00000489215	SOS1	Q07889	1333 aa	Predicted RBP	31.66	■■■□□ 2.66
PTPN18-213	ENST00000489215	MMP10	P09238	476 aa		31.65	■■■□□ 2.66
PTPN18-213	ENST00000489215	LMOD3	Q0VAK6	560 aa		31.65	■■■□□ 2.66

Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms