RNA–Protein interactions for RNA: ENST00000489028.1

RFC4-213, Transcript of replication factor C subunit 4, humanhuman

TSL 3

Gene RFC4, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4-213ENST00000489028 KANK4Q5T7N3 995 aaPredicted RBP7.72□□□□□ -1.17
RFC4-213ENST00000489028 NBPF10Q6P3W6 841 aaKnown RBP7.72□□□□□ -1.17
RFC4-213ENST00000489028 NPAS3Q8IXF0 933 aa7.72□□□□□ -1.17
RFC4-213ENST00000489028 NBPF15Q8N660 670 aa7.72□□□□□ -1.17
RFC4-213ENST00000489028 SERBP1Q8NC51 408 aaKnown RBP eCLIP7.72□□□□□ -1.17
RFC4-213ENST00000489028 ZNF358Q9NW07 568 aa7.72□□□□□ -1.17
RFC4-213ENST00000489028 USP3Q9Y6I4 520 aa7.72□□□□□ -1.17
RFC4-213ENST00000489028 DKK1O94907 266 aa7.71□□□□□ -1.18
RFC4-213ENST00000489028 LMOD1P29536 600 aaPredicted RBP7.71□□□□□ -1.18
RFC4-213ENST00000489028 PSME1Q06323 249 aa7.71□□□□□ -1.18
RFC4-213ENST00000489028 TRIM50Q86XT4 487 aa7.71□□□□□ -1.18
RFC4-213ENST00000489028 OGFOD1Q8N543 542 aa7.71□□□□□ -1.18
RFC4-213ENST00000489028 TPCN2Q8NHX9 752 aa7.71□□□□□ -1.18
RFC4-213ENST00000489028 ZSCAN10Q96SZ4 725 aaPredicted RBP7.71□□□□□ -1.18
RFC4-213ENST00000489028 CUEDC1Q9NWM3 386 aaPredicted RBP7.71□□□□□ -1.18
RFC4-213ENST00000489028 ZNF295-AS1Q8N0V1 137 aa7.7□□□□□ -1.18
RFC4-213ENST00000489028 ZNF594Q96JF6 807 aaPredicted RBP7.7□□□□□ -1.18
RFC4-213ENST00000489028 SLC4A9Q96Q91 983 aa7.7□□□□□ -1.18
RFC4-213ENST00000489028 C1orf115Q9H7X2 142 aa7.7□□□□□ -1.18
RFC4-213ENST00000489028 DNAAF2Q9NVR5 837 aaKnown RBP7.7□□□□□ -1.18
RFC4-213ENST00000489028 VSIG8P0DPA2 414 aa7.69□□□□□ -1.18
RFC4-213ENST00000489028 ITGA6P23229 1130 aa7.69□□□□□ -1.18
RFC4-213ENST00000489028 PHKA2P46019 1235 aa7.69□□□□□ -1.18
RFC4-213ENST00000489028 SMTNP53814 917 aa7.69□□□□□ -1.18
RFC4-213ENST00000489028 CRTC2Q53ET0 693 aaPredicted RBP7.69□□□□□ -1.18
RFC4-213ENST00000489028 C4orf17Q53FE4 359 aa7.69□□□□□ -1.18
RFC4-213ENST00000489028 CCDC102BQ68D86 513 aa7.69□□□□□ -1.18
RFC4-213ENST00000489028 TAS1R3Q7RTX0 852 aa7.69□□□□□ -1.18
RFC4-213ENST00000489028 PPARGC1BQ86YN6 1023 aaKnown RBP7.69□□□□□ -1.18
RFC4-213ENST00000489028 IQSEC3Q9UPP2 1182 aaPredicted RBP7.69□□□□□ -1.18
RFC4-213ENST00000489028 ATP1A2P50993 1020 aa7.68□□□□□ -1.18
RFC4-213ENST00000489028 EPHA4P54764 986 aa7.68□□□□□ -1.18
RFC4-213ENST00000489028 MTFR1Q15390 333 aa7.68□□□□□ -1.18
RFC4-213ENST00000489028 TMEM214Q6NUQ4 689 aaKnown RBP7.68□□□□□ -1.18
RFC4-213ENST00000489028 GPR161Q8N6U8 529 aaKnown RBP7.68□□□□□ -1.18
RFC4-213ENST00000489028 SLC16A10Q8TF71 515 aa7.68□□□□□ -1.18
RFC4-213ENST00000489028 A6NJY4 79 aa7.67□□□□□ -1.18
RFC4-213ENST00000489028 RASA1P20936 1047 aa7.67□□□□□ -1.18
RFC4-213ENST00000489028 RFX1P22670 979 aa7.67□□□□□ -1.18
RFC4-213ENST00000489028 GMPRP36959 345 aa7.67□□□□□ -1.18
RFC4-213ENST00000489028 WDR44Q5JSH3 913 aa7.67□□□□□ -1.18
RFC4-213ENST00000489028 TNS4Q8IZW8 715 aa7.67□□□□□ -1.18
RFC4-213ENST00000489028 SIX5Q8N196 739 aa7.67□□□□□ -1.18
RFC4-213ENST00000489028 LARGE2Q8N3Y3 721 aa7.67□□□□□ -1.18
RFC4-213ENST00000489028 RHBDD1Q8TEB9 315 aa7.67□□□□□ -1.18
RFC4-213ENST00000489028 IRF7Q92985 503 aa7.67□□□□□ -1.18
RFC4-213ENST00000489028 TIMMDC1Q9NPL8 285 aa7.67□□□□□ -1.18
RFC4-213ENST00000489028 SFI1A8K8P3 1242 aa7.66□□□□□ -1.18
RFC4-213ENST00000489028 FOXK2Q01167 660 aa7.66□□□□□ -1.18
RFC4-213ENST00000489028 PTK7Q13308 1070 aa7.66□□□□□ -1.18
RFC4-213ENST00000489028 CDCA8Q53HL2 280 aa7.66□□□□□ -1.18
RFC4-213ENST00000489028 GNASQ5JWF2 1037 aa7.66□□□□□ -1.18
RFC4-213ENST00000489028 NANOS1Q8WY41 292 aaKnown RBP7.66□□□□□ -1.18
RFC4-213ENST00000489028 SCHIP1Q9P0W5 487 aaPredicted RBP7.66□□□□□ -1.18
RFC4-213ENST00000489028 DYRK1BQ9Y463 629 aa7.66□□□□□ -1.18
RFC4-213ENST00000489028 USP17L15C9J2P7 530 aa7.65□□□□□ -1.18
RFC4-213ENST00000489028 USP17L10C9JJH3 530 aa7.65□□□□□ -1.18
RFC4-213ENST00000489028 USP17L13C9JLJ4 530 aa7.65□□□□□ -1.18
RFC4-213ENST00000489028 USP17L12C9JPN9 530 aa7.65□□□□□ -1.18
RFC4-213ENST00000489028 USP17L11C9JVI0 530 aa7.65□□□□□ -1.18
RFC4-213ENST00000489028 USP17L21D6R901 530 aa7.65□□□□□ -1.18
RFC4-213ENST00000489028 USP17L18D6R9N7 530 aa7.65□□□□□ -1.18
RFC4-213ENST00000489028 USP17L22D6RA61 530 aa7.65□□□□□ -1.18
RFC4-213ENST00000489028 USP17L17D6RBQ6 530 aa7.65□□□□□ -1.18
RFC4-213ENST00000489028 USP17L19D6RCP7 530 aa7.65□□□□□ -1.18
RFC4-213ENST00000489028 USP17L20D6RJB6 530 aa7.65□□□□□ -1.18
RFC4-213ENST00000489028 CDK2AP1O14519 115 aa7.65□□□□□ -1.18
RFC4-213ENST00000489028 THBS1P07996 1170 aa7.65□□□□□ -1.18
RFC4-213ENST00000489028 PLA2G4AP47712 749 aa7.65□□□□□ -1.18
RFC4-213ENST00000489028 USP17L24Q0WX57 530 aa7.65□□□□□ -1.18
RFC4-213ENST00000489028 TBCELQ5QJ74 424 aa7.65□□□□□ -1.18
RFC4-213ENST00000489028 VWA5B2Q8N398 1253 aa7.65□□□□□ -1.18
RFC4-213ENST00000489028 GAS2L1Q99501 681 aaPredicted RBP7.65□□□□□ -1.18
RFC4-213ENST00000489028 VRTNQ9H8Y1 702 aa7.65□□□□□ -1.18
RFC4-213ENST00000489028 TIMELESSQ9UNS1 1208 aa7.65□□□□□ -1.18
RFC4-213ENST00000489028 BACH1O14867 736 aa7.64□□□□□ -1.19
RFC4-213ENST00000489028 SRPK2P78362 688 aaKnown RBP7.64□□□□□ -1.19
RFC4-213ENST00000489028 DBN1Q16643 649 aa7.64□□□□□ -1.19
RFC4-213ENST00000489028 TSEN2Q8NCE0 465 aaKnown RBP7.64□□□□□ -1.19
RFC4-213ENST00000489028 ZDHHC1Q8WTX9 485 aa7.64□□□□□ -1.19
RFC4-213ENST00000489028 ZNF837Q96EG3 531 aaPredicted RBP7.64□□□□□ -1.19
RFC4-213ENST00000489028 GPAMQ9HCL2 828 aa7.64□□□□□ -1.19
RFC4-213ENST00000489028 CDC14CA4D256 554 aa7.63□□□□□ -1.19
RFC4-213ENST00000489028 FAM196BA6NMK8 535 aa7.63□□□□□ -1.19
RFC4-213ENST00000489028 WIPF1O43516 503 aa7.63□□□□□ -1.19
RFC4-213ENST00000489028 GTF2E1P29083 439 aaPredicted RBP7.63□□□□□ -1.19
RFC4-213ENST00000489028 KRT76Q01546 638 aa7.63□□□□□ -1.19
RFC4-213ENST00000489028 DPYDQ12882 1025 aa7.63□□□□□ -1.19
RFC4-213ENST00000489028 LARP1Q6PKG0 1096 aaKnown RBP7.63□□□□□ -1.19
RFC4-213ENST00000489028 RIPOR1Q6ZS17 1223 aa7.63□□□□□ -1.19
RFC4-213ENST00000489028 SLC9A9Q8IVB4 645 aa7.63□□□□□ -1.19
RFC4-213ENST00000489028 ARXQ96QS3 562 aa7.63□□□□□ -1.19
RFC4-213ENST00000489028 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP7.62□□□□□ -1.19
RFC4-213ENST00000489028 M0R2N6 131 aa7.62□□□□□ -1.19
RFC4-213ENST00000489028 LGR5O75473 907 aa7.62□□□□□ -1.19
RFC4-213ENST00000489028 F11P03951 625 aa7.62□□□□□ -1.19
RFC4-213ENST00000489028 MSX1P28360 303 aa7.62□□□□□ -1.19
RFC4-213ENST00000489028 TRIM22Q8IYM9 498 aa7.62□□□□□ -1.19
RFC4-213ENST00000489028 CCDC82Q8N4S0 544 aa7.62□□□□□ -1.19
RFC4-213ENST00000489028 NIFKQ9BYG3 293 aaKnown RBP7.62□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms