RNA–Protein interactions for RNA: ENST00000488321.1

TRIM54-204, Transcript of tripartite motif containing 54, humanhuman

TSL 2

Gene TRIM54, Length 560 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-204ENST00000488321 RNMTO43148 476 aaKnown RBP20■□□□□ 0.79
TRIM54-204ENST00000488321 AK7Q96M32 723 aa20■□□□□ 0.79
TRIM54-204ENST00000488321 LY75O60449 1722 aa19.99■□□□□ 0.79
TRIM54-204ENST00000488321 PHACTR3Q96KR7 559 aa19.99■□□□□ 0.79
TRIM54-204ENST00000488321 SLC52A2Q9HAB3 445 aa19.99■□□□□ 0.79
TRIM54-204ENST00000488321 FCHSD2O94868 740 aa19.98■□□□□ 0.79
TRIM54-204ENST00000488321 LINC00116Q8NCU8 138 aa19.98■□□□□ 0.79
TRIM54-204ENST00000488321 GNAT3A8MTJ3 354 aa19.97■□□□□ 0.79
TRIM54-204ENST00000488321 PTCD1O75127 700 aaKnown RBP19.97■□□□□ 0.79
TRIM54-204ENST00000488321 ITPK1Q13572 414 aa19.97■□□□□ 0.79
TRIM54-204ENST00000488321 CASZ1Q86V15 1759 aa19.97■□□□□ 0.79
TRIM54-204ENST00000488321 ITGB4P16144 1822 aa19.97■□□□□ 0.79
TRIM54-204ENST00000488321 MAP3K5Q99683 1374 aa19.96■□□□□ 0.79
TRIM54-204ENST00000488321 PHF14O94880 888 aa19.95■□□□□ 0.78
TRIM54-204ENST00000488321 PTGER2P43116 358 aa19.95■□□□□ 0.78
TRIM54-204ENST00000488321 COL23A1Q86Y22 540 aaPredicted RBP19.95■□□□□ 0.78
TRIM54-204ENST00000488321 SLC16A10Q8TF71 515 aa19.95■□□□□ 0.78
TRIM54-204ENST00000488321 MYBBP1AQ9BQG0 1328 aaKnown RBP19.95■□□□□ 0.78
TRIM54-204ENST00000488321 NEFMP07197 916 aa19.94■□□□□ 0.78
TRIM54-204ENST00000488321 FLAD1Q8NFF5 587 aa19.94■□□□□ 0.78
TRIM54-204ENST00000488321 SLC4A9Q96Q91 983 aa19.94■□□□□ 0.78
TRIM54-204ENST00000488321 GNPATO15228 680 aa19.93■□□□□ 0.78
TRIM54-204ENST00000488321 TEFQ10587 303 aa19.93■□□□□ 0.78
TRIM54-204ENST00000488321 ZNF316A6NFI3 1004 aaPredicted RBP19.92■□□□□ 0.78
TRIM54-204ENST00000488321 SLC39A6Q13433 755 aa19.92■□□□□ 0.78
TRIM54-204ENST00000488321 SMIM5Q71RC9 77 aa19.92■□□□□ 0.78
TRIM54-204ENST00000488321 IL17REQ8NFR9 667 aa19.92■□□□□ 0.78
TRIM54-204ENST00000488321 C5P01031 1676 aa19.91■□□□□ 0.78
TRIM54-204ENST00000488321 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP19.91■□□□□ 0.78
TRIM54-204ENST00000488321 POLD1P28340 1107 aa19.91■□□□□ 0.78
TRIM54-204ENST00000488321 AMIGO3Q86WK7 504 aa19.91■□□□□ 0.78
TRIM54-204ENST00000488321 RTF1Q92541 710 aaKnown RBP19.91■□□□□ 0.78
TRIM54-204ENST00000488321 MSL1Q68DK7 614 aa19.9■□□□□ 0.78
TRIM54-204ENST00000488321 ARXQ96QS3 562 aa19.9■□□□□ 0.78
TRIM54-204ENST00000488321 SGIP1Q9BQI5 828 aa19.9■□□□□ 0.78
TRIM54-204ENST00000488321 C4BP0C0L5 1744 aa19.9■□□□□ 0.78
TRIM54-204ENST00000488321 MRC1P22897 1456 aa19.89■□□□□ 0.77
TRIM54-204ENST00000488321 SSFA2P28290 1259 aa19.89■□□□□ 0.77
TRIM54-204ENST00000488321 TTC5Q8N0Z6 440 aa19.89■□□□□ 0.77
TRIM54-204ENST00000488321 PRKRIP1Q9H875 184 aaPredicted RBP19.89■□□□□ 0.77
TRIM54-204ENST00000488321 MAPK8IP3Q9UPT6 1336 aa19.88■□□□□ 0.77
TRIM54-204ENST00000488321 PNNQ9H307 717 aaKnown RBP19.88■□□□□ 0.77
TRIM54-204ENST00000488321 RTCBQ9Y3I0 505 aaKnown RBP19.88■□□□□ 0.77
TRIM54-204ENST00000488321 MCM10Q7L590 875 aa19.87■□□□□ 0.77
TRIM54-204ENST00000488321 KLHL34Q8N239 644 aa19.87■□□□□ 0.77
TRIM54-204ENST00000488321 CNTNAP4Q9C0A0 1308 aa19.86■□□□□ 0.77
TRIM54-204ENST00000488321 RC3H1Q5TC82 1133 aaKnown RBP19.86■□□□□ 0.77
TRIM54-204ENST00000488321 FHDC1Q9C0D6 1143 aaPredicted RBP19.86■□□□□ 0.77
TRIM54-204ENST00000488321 CRKLP46109 303 aaKnown RBP19.85■□□□□ 0.77
TRIM54-204ENST00000488321 DCTN1Q14203 1278 aa19.85■□□□□ 0.77
TRIM54-204ENST00000488321 DNAJC10Q8IXB1 793 aa19.85■□□□□ 0.77
TRIM54-204ENST00000488321 PLEKHF1Q96S99 279 aa19.85■□□□□ 0.77
TRIM54-204ENST00000488321 SCN11AQ9UI33 1791 aa19.85■□□□□ 0.77
TRIM54-204ENST00000488321 CEMIPQ8WUJ3 1361 aa19.84■□□□□ 0.77
TRIM54-204ENST00000488321 WDR43Q15061 677 aaKnown RBP eCLIP19.84■□□□□ 0.77
TRIM54-204ENST00000488321 TRAPPC3LQ5T215 181 aa19.84■□□□□ 0.77
TRIM54-204ENST00000488321 BTBD11A6QL63 1104 aa19.83■□□□□ 0.77
TRIM54-204ENST00000488321 HTATSF1O43719 755 aaKnown RBP19.83■□□□□ 0.77
TRIM54-204ENST00000488321 RPS6KA4O75676 772 aa19.83■□□□□ 0.77
TRIM54-204ENST00000488321 ZNF790Q6PG37 636 aa19.83■□□□□ 0.77
TRIM54-204ENST00000488321 ADAMTS7Q9UKP4 1686 aa19.83■□□□□ 0.76
TRIM54-204ENST00000488321 QSER1Q2KHR3 1735 aa19.82■□□□□ 0.76
TRIM54-204ENST00000488321 NFE2L2Q16236 605 aa19.82■□□□□ 0.76
TRIM54-204ENST00000488321 SYT17Q9BSW7 474 aa19.82■□□□□ 0.76
TRIM54-204ENST00000488321 TAF1LQ8IZX4 1826 aa19.81■□□□□ 0.76
TRIM54-204ENST00000488321 TUBGCP6Q96RT7 1819 aa19.81■□□□□ 0.76
TRIM54-204ENST00000488321 RFC4P35249 363 aa19.81■□□□□ 0.76
TRIM54-204ENST00000488321 VSIG10Q8N0Z9 540 aa19.81■□□□□ 0.76
TRIM54-204ENST00000488321 ZNF496Q96IT1 587 aaPredicted RBP19.81■□□□□ 0.76
TRIM54-204ENST00000488321 DCAF8L1A6NGE4 600 aa19.8■□□□□ 0.76
TRIM54-204ENST00000488321 ADRA2BP18089 450 aa19.8■□□□□ 0.76
TRIM54-204ENST00000488321 ARHGEF1Q92888 912 aaKnown RBP19.8■□□□□ 0.76
TRIM54-204ENST00000488321 CCDC87Q9NVE4 849 aa19.8■□□□□ 0.76
TRIM54-204ENST00000488321 KCPQ6ZWJ8 1503 aa19.8■□□□□ 0.76
TRIM54-204ENST00000488321 KCNQ3O43525 872 aa19.79■□□□□ 0.76
TRIM54-204ENST00000488321 CYP19A1P11511 503 aaPredicted RBP19.79■□□□□ 0.76
TRIM54-204ENST00000488321 INTS5Q6P9B9 1019 aaKnown RBP19.79■□□□□ 0.76
TRIM54-204ENST00000488321 CCDC146Q8IYE0 955 aa19.79■□□□□ 0.76
TRIM54-204ENST00000488321 FMNL2Q96PY5 1086 aa19.79■□□□□ 0.76
TRIM54-204ENST00000488321 ZNF831Q5JPB2 1677 aa19.78■□□□□ 0.76
TRIM54-204ENST00000488321 STARD3NLO95772 234 aa19.78■□□□□ 0.76
TRIM54-204ENST00000488321 HEG1Q9ULI3 1381 aa19.77■□□□□ 0.76
TRIM54-204ENST00000488321 RIPK4P57078 832 aa19.76■□□□□ 0.75
TRIM54-204ENST00000488321 TAF7Q15545 349 aaPredicted RBP19.76■□□□□ 0.75
TRIM54-204ENST00000488321 THUMPD2Q9BTF0 503 aaKnown RBP19.76■□□□□ 0.75
TRIM54-204ENST00000488321 ADAMTS8Q9UP79 889 aa19.76■□□□□ 0.75
TRIM54-204ENST00000488321 ZBTB1Q9Y2K1 713 aa19.76■□□□□ 0.75
TRIM54-204ENST00000488321 CANXP27824 592 aaKnown RBP19.75■□□□□ 0.75
TRIM54-204ENST00000488321 TEX13AQ9BXU3 409 aaPredicted RBP19.75■□□□□ 0.75
TRIM54-204ENST00000488321 MIS18AQ9NYP9 233 aa19.75■□□□□ 0.75
TRIM54-204ENST00000488321 UBR3Q6ZT12 1888 aa19.75■□□□□ 0.75
TRIM54-204ENST00000488321 TJP1Q07157 1748 aa19.74■□□□□ 0.75
TRIM54-204ENST00000488321 ANP32CO43423 234 aa19.74■□□□□ 0.75
TRIM54-204ENST00000488321 NEUROD2Q15784 382 aa19.74■□□□□ 0.75
TRIM54-204ENST00000488321 NLGN1Q8N2Q7 840 aa19.74■□□□□ 0.75
TRIM54-204ENST00000488321 SRP68Q9UHB9 627 aaKnown RBP19.74■□□□□ 0.75
TRIM54-204ENST00000488321 RRP7AQ9Y3A4 280 aaKnown RBP19.74■□□□□ 0.75
TRIM54-204ENST00000488321 SOS1Q07889 1333 aaPredicted RBP19.74■□□□□ 0.75
TRIM54-204ENST00000488321 COL5A3P25940 1745 aaPredicted RBP19.73■□□□□ 0.75
TRIM54-204ENST00000488321 MMP10P09238 476 aa19.73■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 76.5 ms