RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 REC8O95072 547 aa22.07■■□□□ 1.12
VIM-206ENST00000487938 HTATSF1O43719 755 aaKnown RBP22.06■■□□□ 1.12
VIM-206ENST00000487938 ABTB2Q8N961 1025 aa22.06■■□□□ 1.12
VIM-206ENST00000487938 OSBPL3Q9H4L5 887 aa22.06■■□□□ 1.12
VIM-206ENST00000487938 C14orf37Q86TY3 774 aa22.06■■□□□ 1.12
VIM-206ENST00000487938 USHBP1Q8N6Y0 703 aa22.06■■□□□ 1.12
VIM-206ENST00000487938 PIK3C2AO00443 1686 aa22.06■■□□□ 1.12
VIM-206ENST00000487938 GOLGA6L22H0YM25 854 aa22.05■■□□□ 1.12
VIM-206ENST00000487938 KCNA6P17658 529 aa22.05■■□□□ 1.12
VIM-206ENST00000487938 PTMSP20962 102 aa22.05■■□□□ 1.12
VIM-206ENST00000487938 PKP1Q13835 747 aa22.05■■□□□ 1.12
VIM-206ENST00000487938 ST18O60284 1047 aa22.04■■□□□ 1.12
VIM-206ENST00000487938 LRRCC1Q9C099 1032 aa22.04■■□□□ 1.12
VIM-206ENST00000487938 ATP8B2P98198 1209 aa22.04■■□□□ 1.12
VIM-206ENST00000487938 ZGPATQ8N5A5 531 aaKnown RBP22.04■■□□□ 1.12
VIM-206ENST00000487938 GNAI3P08754 354 aa22.03■■□□□ 1.12
VIM-206ENST00000487938 TAF7Q15545 349 aaPredicted RBP22.03■■□□□ 1.12
VIM-206ENST00000487938 CLEC17AQ6ZS10 378 aa22.03■■□□□ 1.12
VIM-206ENST00000487938 LRRFIP2Q9Y608 721 aaKnown RBP22.03■■□□□ 1.12
VIM-206ENST00000487938 MCTP1Q6DN14 999 aa22.03■■□□□ 1.12
VIM-206ENST00000487938 DDX49Q9Y6V7 483 aaKnown RBP22.03■■□□□ 1.12
VIM-206ENST00000487938 XRN1Q8IZH2 1706 aaKnown RBP22.02■■□□□ 1.12
VIM-206ENST00000487938 ISY1Q9ULR0 285 aaKnown RBP22.01■■□□□ 1.11
VIM-206ENST00000487938 NUCB2P80303 420 aa22.01■■□□□ 1.11
VIM-206ENST00000487938 RILPL2Q969X0 211 aa22.01■■□□□ 1.11
VIM-206ENST00000487938 MAP3K5Q99683 1374 aa22■■□□□ 1.11
VIM-206ENST00000487938 SALL3Q9BXA9 1300 aa22■■□□□ 1.11
VIM-206ENST00000487938 MX1P20591 662 aa22■■□□□ 1.11
VIM-206ENST00000487938 PHAXQ9H814 394 aaKnown RBP22■■□□□ 1.11
VIM-206ENST00000487938 TRIM6-TRIM34B2RNG4 842 aa22■■□□□ 1.11
VIM-206ENST00000487938 USP44Q9H0E7 712 aa21.99■■□□□ 1.11
VIM-206ENST00000487938 ANKARQ7Z5J8 1434 aa21.99■■□□□ 1.11
VIM-206ENST00000487938 CYP2E1P05181 493 aaPredicted RBP21.99■■□□□ 1.11
VIM-206ENST00000487938 RBM33Q96EV2 1170 aaKnown RBP21.99■■□□□ 1.11
VIM-206ENST00000487938 NEK4P51957 841 aa21.98■■□□□ 1.11
VIM-206ENST00000487938 ESYT1Q9BSJ8 1104 aa21.98■■□□□ 1.11
VIM-206ENST00000487938 CWC22Q9HCG8 908 aaKnown RBP21.98■■□□□ 1.11
VIM-206ENST00000487938 NCLP19338 710 aaKnown RBP21.97■■□□□ 1.11
VIM-206ENST00000487938 HDGFL1Q5TGJ6 251 aa21.97■■□□□ 1.11
VIM-206ENST00000487938 EIF2S2P20042 333 aaKnown RBP21.97■■□□□ 1.11
VIM-206ENST00000487938 KLHL40Q2TBA0 621 aa21.97■■□□□ 1.11
VIM-206ENST00000487938 NWD1Q149M9 1564 aa21.97■■□□□ 1.11
VIM-206ENST00000487938 IBTKQ9P2D0 1353 aaPredicted RBP21.97■■□□□ 1.11
VIM-206ENST00000487938 ZBTB7CA1YPR0 619 aa21.96■■□□□ 1.11
VIM-206ENST00000487938 IL1RAPL2Q9NP60 686 aa21.96■■□□□ 1.11
VIM-206ENST00000487938 UBTFL1P0CB47 393 aaPredicted RBP21.96■■□□□ 1.11
VIM-206ENST00000487938 UNC5CLQ8IV45 518 aa21.95■■□□□ 1.1
VIM-206ENST00000487938 ZDHHC9Q9Y397 364 aa21.95■■□□□ 1.1
VIM-206ENST00000487938 LRRC37A3O60309 1634 aa21.95■■□□□ 1.1
VIM-206ENST00000487938 CHMLP26374 656 aa21.95■■□□□ 1.1
VIM-206ENST00000487938 LMBRD1Q9NUN5 540 aa21.95■■□□□ 1.1
VIM-206ENST00000487938 CHAMP1Q96JM3 812 aa21.94■■□□□ 1.1
VIM-206ENST00000487938 LGR6Q9HBX8 967 aa21.94■■□□□ 1.1
VIM-206ENST00000487938 ANO2Q9NQ90 1003 aa21.94■■□□□ 1.1
VIM-206ENST00000487938 PALD1Q9ULE6 856 aa21.94■■□□□ 1.1
VIM-206ENST00000487938 FAM208AQ9UK61 1670 aaKnown RBP21.94■■□□□ 1.1
VIM-206ENST00000487938 FOXD4L5Q5VV16 416 aaPredicted RBP21.94■■□□□ 1.1
VIM-206ENST00000487938 ANKLE2Q86XL3 938 aa21.94■■□□□ 1.1
VIM-206ENST00000487938 FOXD4L4Q8WXT5 416 aaPredicted RBP21.94■■□□□ 1.1
VIM-206ENST00000487938 NUTM1Q86Y26 1132 aa21.93■■□□□ 1.1
VIM-206ENST00000487938 MARF1Q9Y4F3 1742 aaKnown RBP21.93■■□□□ 1.1
VIM-206ENST00000487938 NBPF6Q5VWK0 638 aa21.92■■□□□ 1.1
VIM-206ENST00000487938 NOL8Q76FK4 1167 aaKnown RBP21.92■■□□□ 1.1
VIM-206ENST00000487938 NBPF4Q96M43 638 aa21.92■■□□□ 1.1
VIM-206ENST00000487938 BABAM1Q9NWV8 329 aa21.92■■□□□ 1.1
VIM-206ENST00000487938 SETD1BQ9UPS6 1966 aaKnown RBP21.92■■□□□ 1.1
VIM-206ENST00000487938 PRPF40AO75400 957 aaKnown RBP21.92■■□□□ 1.1
VIM-206ENST00000487938 PLEKHG5O94827 1062 aa21.92■■□□□ 1.1
VIM-206ENST00000487938 CAVIN1Q6NZI2 390 aaKnown RBP21.92■■□□□ 1.1
VIM-206ENST00000487938 TMX3Q96JJ7 454 aa21.92■■□□□ 1.1
VIM-206ENST00000487938 STAP2Q9UGK3 403 aa21.92■■□□□ 1.1
VIM-206ENST00000487938 PPP1R42Q7Z4L9 355 aa21.91■■□□□ 1.1
VIM-206ENST00000487938 PHF8Q9UPP1 1060 aa21.91■■□□□ 1.1
VIM-206ENST00000487938 KCNQ3O43525 872 aa21.91■■□□□ 1.1
VIM-206ENST00000487938 SURF6O75683 361 aaKnown RBP21.91■■□□□ 1.1
VIM-206ENST00000487938 MAP4K4O95819 1239 aaPredicted RBP21.91■■□□□ 1.1
VIM-206ENST00000487938 SOS1Q07889 1333 aaPredicted RBP21.9■■□□□ 1.1
VIM-206ENST00000487938 MCCP23508 829 aa21.9■■□□□ 1.1
VIM-206ENST00000487938 SSH3Q8TE77 659 aa21.9■■□□□ 1.1
VIM-206ENST00000487938 IP6K1Q92551 441 aa21.9■■□□□ 1.1
VIM-206ENST00000487938 SRCIN1Q9C0H9 1055 aa21.9■■□□□ 1.1
VIM-206ENST00000487938 ANXA1P04083 346 aa21.89■■□□□ 1.09
VIM-206ENST00000487938 NBPF7P0C2Y1 421 aaPredicted RBP21.89■■□□□ 1.09
VIM-206ENST00000487938 CLCN1P35523 988 aa21.89■■□□□ 1.09
VIM-206ENST00000487938 EIF4A1P60842 406 aaKnown RBP21.89■■□□□ 1.09
VIM-206ENST00000487938 TRIM44Q96DX7 344 aaPredicted RBP21.89■■□□□ 1.09
VIM-206ENST00000487938 IL25Q9H293 177 aa21.89■■□□□ 1.09
VIM-206ENST00000487938 CHPF2Q9P2E5 772 aa21.89■■□□□ 1.09
VIM-206ENST00000487938 NASPP49321 788 aaPredicted RBP21.87■■□□□ 1.09
VIM-206ENST00000487938 ERBB4Q15303 1308 aa21.87■■□□□ 1.09
VIM-206ENST00000487938 CACNA1FO60840 1977 aa21.87■■□□□ 1.09
VIM-206ENST00000487938 ZSCAN23Q3MJ62 389 aa21.87■■□□□ 1.09
VIM-206ENST00000487938 LRRC59Q96AG4 307 aaKnown RBP21.87■■□□□ 1.09
VIM-206ENST00000487938 ESPNB1AK53 854 aa21.86■■□□□ 1.09
VIM-206ENST00000487938 SRGAP3O43295 1099 aa21.86■■□□□ 1.09
VIM-206ENST00000487938 PI4KAP2A4QPH2 592 aa21.86■■□□□ 1.09
VIM-206ENST00000487938 PSME1Q06323 249 aa21.86■■□□□ 1.09
VIM-206ENST00000487938 PI4KAP1Q8N8J0 262 aa21.86■■□□□ 1.09
VIM-206ENST00000487938 GPT2Q8TD30 523 aa21.86■■□□□ 1.09
VIM-206ENST00000487938 UPF3BQ9BZI7 483 aaKnown RBP21.86■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms