RNA–Protein interactions for RNA: ENST00000487880.2

USP48-209, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 524 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-209ENST00000487880 FAM200AQ8TCP9 573 aa10.21□□□□□ -0.77
USP48-209ENST00000487880 SLC4A9Q96Q91 983 aa10.21□□□□□ -0.77
USP48-209ENST00000487880 ESYT1Q9BSJ8 1104 aa10.21□□□□□ -0.77
USP48-209ENST00000487880 USTQ9Y2C2 406 aa10.21□□□□□ -0.77
USP48-209ENST00000487880 SFI1A8K8P3 1242 aa10.2□□□□□ -0.78
USP48-209ENST00000487880 CSB-PGBD3P0DP91 1061 aa10.2□□□□□ -0.78
USP48-209ENST00000487880 CNKSR1Q969H4 720 aa10.2□□□□□ -0.78
USP48-209ENST00000487880 ZNF395Q9H8N7 513 aaPredicted RBP10.2□□□□□ -0.78
USP48-209ENST00000487880 EPHA4P54764 986 aa10.19□□□□□ -0.78
USP48-209ENST00000487880 UPP2O95045 317 aa10.18□□□□□ -0.78
USP48-209ENST00000487880 INSM2Q96T92 566 aaPredicted RBP10.18□□□□□ -0.78
USP48-209ENST00000487880 FHDC1Q9C0D6 1143 aaPredicted RBP10.18□□□□□ -0.78
USP48-209ENST00000487880 RBM19Q9Y4C8 960 aaKnown RBP10.18□□□□□ -0.78
USP48-209ENST00000487880 BACH1O14867 736 aa10.17□□□□□ -0.78
USP48-209ENST00000487880 MTFR1Q15390 333 aa10.17□□□□□ -0.78
USP48-209ENST00000487880 SWI5Q1ZZU3 235 aa10.17□□□□□ -0.78
USP48-209ENST00000487880 TSEN2Q8NCE0 465 aaKnown RBP10.17□□□□□ -0.78
USP48-209ENST00000487880 ATP13A2Q9NQ11 1180 aa10.17□□□□□ -0.78
USP48-209ENST00000487880 DACH1Q9UI36 760 aa10.17□□□□□ -0.78
USP48-209ENST00000487880 MEN1O00255 615 aa10.16□□□□□ -0.78
USP48-209ENST00000487880 BMP2P12643 396 aa10.16□□□□□ -0.78
USP48-209ENST00000487880 GPC1P35052 558 aa10.16□□□□□ -0.78
USP48-209ENST00000487880 SCARF1Q14162 830 aa10.16□□□□□ -0.78
USP48-209ENST00000487880 HOMEZQ8IX15 550 aa10.16□□□□□ -0.78
USP48-209ENST00000487880 PURBQ96QR8 312 aaKnown RBP10.16□□□□□ -0.78
USP48-209ENST00000487880 SERTAD1Q9UHV2 236 aa10.16□□□□□ -0.78
USP48-209ENST00000487880 CTSOP43234 321 aaPredicted RBP10.15□□□□□ -0.78
USP48-209ENST00000487880 RNF144AP50876 292 aaPredicted RBP10.15□□□□□ -0.78
USP48-209ENST00000487880 SMTNP53814 917 aa10.15□□□□□ -0.78
USP48-209ENST00000487880 FOXK2Q01167 660 aa10.15□□□□□ -0.78
USP48-209ENST00000487880 CENPCQ03188 943 aa10.15□□□□□ -0.78
USP48-209ENST00000487880 C6orf118Q5T5N4 469 aa10.15□□□□□ -0.78
USP48-209ENST00000487880 FOXD4L5Q5VV16 416 aaPredicted RBP10.15□□□□□ -0.78
USP48-209ENST00000487880 NLRP3Q96P20 1036 aa10.15□□□□□ -0.78
USP48-209ENST00000487880 A6NJY4 79 aa10.14□□□□□ -0.79
USP48-209ENST00000487880 TLR1Q15399 786 aa10.14□□□□□ -0.79
USP48-209ENST00000487880 CLP1Q92989 425 aaKnown RBP10.14□□□□□ -0.79
USP48-209ENST00000487880 ZFP42Q96MM3 310 aa10.14□□□□□ -0.79
USP48-209ENST00000487880 SCHIP1Q9P0W5 487 aaPredicted RBP10.14□□□□□ -0.79
USP48-209ENST00000487880 SLAIN2Q9P270 581 aa10.14□□□□□ -0.79
USP48-209ENST00000487880 SOS2Q07890 1332 aaPredicted RBP10.13□□□□□ -0.79
USP48-209ENST00000487880 TNS4Q8IZW8 715 aa10.13□□□□□ -0.79
USP48-209ENST00000487880 ZNF295-AS1Q8N0V1 137 aa10.13□□□□□ -0.79
USP48-209ENST00000487880 GRIP2Q9C0E4 1043 aa10.13□□□□□ -0.79
USP48-209ENST00000487880 IQSEC3Q9UPP2 1182 aaPredicted RBP10.13□□□□□ -0.79
USP48-209ENST00000487880 CARNS1A5YM72 827 aa10.12□□□□□ -0.79
USP48-209ENST00000487880 PDE4CQ08493 712 aa10.12□□□□□ -0.79
USP48-209ENST00000487880 RNF217Q8TC41 542 aa10.12□□□□□ -0.79
USP48-209ENST00000487880 POLMQ9NP87 494 aaPredicted RBP10.12□□□□□ -0.79
USP48-209ENST00000487880 CDK2AP1O14519 115 aa10.11□□□□□ -0.79
USP48-209ENST00000487880 WEE1P30291 646 aa10.11□□□□□ -0.79
USP48-209ENST00000487880 OCLNQ16625 522 aa10.11□□□□□ -0.79
USP48-209ENST00000487880 TTLL8A6PVC2 850 aa10.1□□□□□ -0.79
USP48-209ENST00000487880 PPARGC1BQ86YN6 1023 aaKnown RBP10.1□□□□□ -0.79
USP48-209ENST00000487880 HINFPQ9BQA5 517 aa10.1□□□□□ -0.79
USP48-209ENST00000487880 TRAIPQ9BWF2 469 aa10.1□□□□□ -0.79
USP48-209ENST00000487880 USP3Q9Y6I4 520 aa10.1□□□□□ -0.79
USP48-209ENST00000487880 C21orf2O43822 256 aa10.09□□□□□ -0.79
USP48-209ENST00000487880 ZNF787Q6DD87 383 aa10.09□□□□□ -0.79
USP48-209ENST00000487880 SLC9A9Q8IVB4 645 aa10.09□□□□□ -0.79
USP48-209ENST00000487880 ZSCAN10Q96SZ4 725 aaPredicted RBP10.09□□□□□ -0.79
USP48-209ENST00000487880 TSPAN10Q9H1Z9 355 aaPredicted RBP10.09□□□□□ -0.79
USP48-209ENST00000487880 SPATA31C2B4DYI2 1134 aa10.08□□□□□ -0.8
USP48-209ENST00000487880 POTEAQ6S8J7 498 aa10.08□□□□□ -0.8
USP48-209ENST00000487880 NBPF15Q8N660 670 aa10.08□□□□□ -0.8
USP48-209ENST00000487880 LGR5O75473 907 aa10.07□□□□□ -0.8
USP48-209ENST00000487880 IGFBP4P22692 258 aa10.07□□□□□ -0.8
USP48-209ENST00000487880 SLC27A3Q5K4L6 730 aa10.07□□□□□ -0.8
USP48-209ENST00000487880 TRIM47Q96LD4 638 aa10.07□□□□□ -0.8
USP48-209ENST00000487880 DNMT3LQ9UJW3 386 aa10.07□□□□□ -0.8
USP48-209ENST00000487880 PRMT3O60678 531 aa10.06□□□□□ -0.8
USP48-209ENST00000487880 PHLDB3Q6NSJ2 640 aa10.06□□□□□ -0.8
USP48-209ENST00000487880 GAS2L2Q8NHY3 880 aa10.06□□□□□ -0.8
USP48-209ENST00000487880 RHBDD1Q8TEB9 315 aa10.06□□□□□ -0.8
USP48-209ENST00000487880 SENP2Q9HC62 589 aa10.06□□□□□ -0.8
USP48-209ENST00000487880 CXXC1Q9P0U4 656 aaPredicted RBP10.06□□□□□ -0.8
USP48-209ENST00000487880 ATP2B4P23634 1241 aa10.05□□□□□ -0.8
USP48-209ENST00000487880 SSFA2P28290 1259 aa10.05□□□□□ -0.8
USP48-209ENST00000487880 TBCELQ5QJ74 424 aa10.05□□□□□ -0.8
USP48-209ENST00000487880 TMEM214Q6NUQ4 689 aaKnown RBP10.05□□□□□ -0.8
USP48-209ENST00000487880 LYSMD3Q7Z3D4 306 aa10.05□□□□□ -0.8
USP48-209ENST00000487880 STAG2Q8N3U4 1231 aa10.05□□□□□ -0.8
USP48-209ENST00000487880 SCG3Q8WXD2 468 aaKnown RBP10.05□□□□□ -0.8
USP48-209ENST00000487880 KIFC2Q96AC6 838 aa10.05□□□□□ -0.8
USP48-209ENST00000487880 PRIMPOLQ96LW4 560 aa10.05□□□□□ -0.8
USP48-209ENST00000487880 GMPR2Q9P2T1 348 aaKnown RBP10.05□□□□□ -0.8
USP48-209ENST00000487880 ATAD2Q6PL18 1390 aa10.04□□□□□ -0.8
USP48-209ENST00000487880 PDIA4P13667 645 aaKnown RBP10.04□□□□□ -0.8
USP48-209ENST00000487880 PSMA6P60900 246 aaKnown RBP10.04□□□□□ -0.8
USP48-209ENST00000487880 TEAD4Q15561 434 aa10.04□□□□□ -0.8
USP48-209ENST00000487880 WDR44Q5JSH3 913 aa10.04□□□□□ -0.8
USP48-209ENST00000487880 C1orf216Q8TAB5 229 aa10.04□□□□□ -0.8
USP48-209ENST00000487880 ZDHHC1Q8WTX9 485 aa10.04□□□□□ -0.8
USP48-209ENST00000487880 HIRAP54198 1017 aaPredicted RBP10.03□□□□□ -0.8
USP48-209ENST00000487880 C4orf17Q53FE4 359 aa10.03□□□□□ -0.8
USP48-209ENST00000487880 GNASQ5JWF2 1037 aa10.03□□□□□ -0.8
USP48-209ENST00000487880 NBPF10Q6P3W6 841 aaKnown RBP10.03□□□□□ -0.8
USP48-209ENST00000487880 C2orf49Q9BVC5 232 aaPredicted RBP10.03□□□□□ -0.8
USP48-209ENST00000487880 NIFKQ9BYG3 293 aaKnown RBP10.03□□□□□ -0.8
USP48-209ENST00000487880 FIGNL2A6NMB9 653 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms