RNA–Protein interactions for RNA: ENST00000486758.5

SHROOM3-208, Transcript of shroom family member 3, humanhuman

TSL 2

Gene SHROOM3, Length 3,766 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-208ENST00000486758 IL16Q14005 1332 aa14.87□□□□□ -0.03
SHROOM3-208ENST00000486758 RIMS2Q9UQ26 1411 aa14.87□□□□□ -0.03
SHROOM3-208ENST00000486758 NSFL1CQ9UNZ2 370 aaKnown RBP14.87□□□□□ -0.03
SHROOM3-208ENST00000486758 RNF17Q9BXT8 1623 aaKnown RBP14.87□□□□□ -0.03
SHROOM3-208ENST00000486758 ERC2O15083 957 aa14.86□□□□□ -0.03
SHROOM3-208ENST00000486758 MTHFSDQ2M296 383 aaKnown RBP14.86□□□□□ -0.03
SHROOM3-208ENST00000486758 LRSAM1Q6UWE0 723 aa14.86□□□□□ -0.03
SHROOM3-208ENST00000486758 TTC21BQ7Z4L5 1316 aa14.86□□□□□ -0.03
SHROOM3-208ENST00000486758 CWC22Q9HCG8 908 aaKnown RBP14.86□□□□□ -0.03
SHROOM3-208ENST00000486758 LRRFIP2Q9Y608 721 aaKnown RBP14.86□□□□□ -0.03
SHROOM3-208ENST00000486758 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP14.86□□□□□ -0.03
SHROOM3-208ENST00000486758 TET3O43151 1660 aa14.86□□□□□ -0.03
SHROOM3-208ENST00000486758 PPP1R9BQ96SB3 815 aa14.86□□□□□ -0.03
SHROOM3-208ENST00000486758 SIL1Q9H173 461 aa14.86□□□□□ -0.03
SHROOM3-208ENST00000486758 HECW2Q9P2P5 1572 aa14.86□□□□□ -0.03
SHROOM3-208ENST00000486758 GPT2Q8TD30 523 aa14.85□□□□□ -0.03
SHROOM3-208ENST00000486758 CCDC30Q5VVM6 783 aa14.85□□□□□ -0.03
SHROOM3-208ENST00000486758 MTERF4Q7Z6M4 381 aaKnown RBP14.85□□□□□ -0.03
SHROOM3-208ENST00000486758 DYNC1I1O14576 645 aa14.84□□□□□ -0.03
SHROOM3-208ENST00000486758 SRGAP3O43295 1099 aa14.84□□□□□ -0.03
SHROOM3-208ENST00000486758 KIF3AQ9Y496 699 aa14.84□□□□□ -0.03
SHROOM3-208ENST00000486758 MYOM2P54296 1465 aa14.84□□□□□ -0.03
SHROOM3-208ENST00000486758 EFCAB6Q5THR3 1501 aa14.84□□□□□ -0.03
SHROOM3-208ENST00000486758 GSPT1P15170 499 aaKnown RBP14.84□□□□□ -0.03
SHROOM3-208ENST00000486758 LRRCC1Q9C099 1032 aa14.84□□□□□ -0.03
SHROOM3-208ENST00000486758 FOSBP53539 338 aa14.84□□□□□ -0.03
SHROOM3-208ENST00000486758 TTC22Q5TAA0 569 aa14.84□□□□□ -0.03
SHROOM3-208ENST00000486758 MPRIPQ6WCQ1 1025 aa14.84□□□□□ -0.03
SHROOM3-208ENST00000486758 PLEKHM2Q8IWE5 1019 aa14.84□□□□□ -0.03
SHROOM3-208ENST00000486758 TMX3Q96JJ7 454 aa14.84□□□□□ -0.03
SHROOM3-208ENST00000486758 VIRMAQ69YN4 1812 aaKnown RBP14.83□□□□□ -0.03
SHROOM3-208ENST00000486758 ADCY5O95622 1261 aa14.83□□□□□ -0.03
SHROOM3-208ENST00000486758 C1orf141Q5JVX7 400 aa14.83□□□□□ -0.03
SHROOM3-208ENST00000486758 SHPRHQ149N8 1683 aa14.83□□□□□ -0.04
SHROOM3-208ENST00000486758 RPAP2Q8IXW5 612 aaPredicted RBP14.83□□□□□ -0.04
SHROOM3-208ENST00000486758 DIAPH3Q9NSV4 1193 aa14.83□□□□□ -0.04
SHROOM3-208ENST00000486758 FLIIQ13045 1269 aa14.82□□□□□ -0.04
SHROOM3-208ENST00000486758 METP08581 1390 aa14.82□□□□□ -0.04
SHROOM3-208ENST00000486758 CWC27Q6UX04 472 aaKnown RBP14.82□□□□□ -0.04
SHROOM3-208ENST00000486758 PDCL2Q8N4E4 241 aa14.82□□□□□ -0.04
SHROOM3-208ENST00000486758 ZNF335Q9H4Z2 1342 aaPredicted RBP14.82□□□□□ -0.04
SHROOM3-208ENST00000486758 ZC3H6P61129 1189 aaKnown RBP14.82□□□□□ -0.04
SHROOM3-208ENST00000486758 CAMK4Q16566 473 aa14.81□□□□□ -0.04
SHROOM3-208ENST00000486758 MAP3K19Q56UN5 1328 aa14.81□□□□□ -0.04
SHROOM3-208ENST00000486758 ZNF445P59923 1031 aa14.81□□□□□ -0.04
SHROOM3-208ENST00000486758 CEP85Q6P2H3 762 aa14.81□□□□□ -0.04
SHROOM3-208ENST00000486758 ZNF530Q6P9A1 599 aaPredicted RBP14.81□□□□□ -0.04
SHROOM3-208ENST00000486758 GIMAP6Q6P9H5 292 aa14.81□□□□□ -0.04
SHROOM3-208ENST00000486758 FERMT3Q86UX7 667 aa14.81□□□□□ -0.04
SHROOM3-208ENST00000486758 PROSER2Q86WR7 435 aaPredicted RBP14.81□□□□□ -0.04
SHROOM3-208ENST00000486758 USP26Q9BXU7 913 aa14.81□□□□□ -0.04
SHROOM3-208ENST00000486758 SMC3Q9UQE7 1217 aa14.81□□□□□ -0.04
SHROOM3-208ENST00000486758 GNAI3P08754 354 aa14.81□□□□□ -0.04
SHROOM3-208ENST00000486758 MYL6BP14649 208 aa14.81□□□□□ -0.04
SHROOM3-208ENST00000486758 GNAT3A8MTJ3 354 aa14.8□□□□□ -0.04
SHROOM3-208ENST00000486758 GADD45BO75293 160 aaPredicted RBP14.8□□□□□ -0.04
SHROOM3-208ENST00000486758 NOLC1Q14978 699 aaKnown RBP eCLIP14.8□□□□□ -0.04
SHROOM3-208ENST00000486758 EYA1Q99502 592 aa14.8□□□□□ -0.04
SHROOM3-208ENST00000486758 NLRP2Q9NX02 1062 aa14.8□□□□□ -0.04
SHROOM3-208ENST00000486758 MSH6P52701 1360 aa14.8□□□□□ -0.04
SHROOM3-208ENST00000486758 TAF7Q15545 349 aaPredicted RBP14.8□□□□□ -0.04
SHROOM3-208ENST00000486758 KLHL34Q8N239 644 aa14.8□□□□□ -0.04
SHROOM3-208ENST00000486758 IQSEC2Q5JU85 1478 aa14.8□□□□□ -0.04
SHROOM3-208ENST00000486758 GOLGA6L6A8MZA4 724 aa14.8□□□□□ -0.04
SHROOM3-208ENST00000486758 CCT4P50991 539 aaKnown RBP14.8□□□□□ -0.04
SHROOM3-208ENST00000486758 HMGN5P82970 282 aaKnown RBP14.8□□□□□ -0.04
SHROOM3-208ENST00000486758 IFIT2P09913 472 aaKnown RBP14.79□□□□□ -0.04
SHROOM3-208ENST00000486758 MX1P20591 662 aa14.79□□□□□ -0.04
SHROOM3-208ENST00000486758 DDIT3P35638 169 aa14.79□□□□□ -0.04
SHROOM3-208ENST00000486758 PIP4K2AP48426 406 aaPredicted RBP14.79□□□□□ -0.04
SHROOM3-208ENST00000486758 ANKRD44Q8N8A2 993 aa14.79□□□□□ -0.04
SHROOM3-208ENST00000486758 PHAXQ9H814 394 aaKnown RBP14.79□□□□□ -0.04
SHROOM3-208ENST00000486758 LTKP29376 864 aa14.79□□□□□ -0.04
SHROOM3-208ENST00000486758 LRRC59Q96AG4 307 aaKnown RBP14.79□□□□□ -0.04
SHROOM3-208ENST00000486758 C16orf45Q96MC5 204 aaPredicted RBP14.79□□□□□ -0.04
SHROOM3-208ENST00000486758 PUS7Q96PZ0 661 aaKnown RBP14.79□□□□□ -0.04
SHROOM3-208ENST00000486758 SPG7Q9UQ90 795 aa14.79□□□□□ -0.04
SHROOM3-208ENST00000486758 LAMC1P11047 1609 aa14.78□□□□□ -0.04
SHROOM3-208ENST00000486758 USP48Q86UV5 1035 aa14.78□□□□□ -0.04
SHROOM3-208ENST00000486758 SRCIN1Q9C0H9 1055 aa14.78□□□□□ -0.04
SHROOM3-208ENST00000486758 CGNQ9P2M7 1197 aaKnown RBP14.78□□□□□ -0.04
SHROOM3-208ENST00000486758 CNPY2Q9Y2B0 182 aa14.78□□□□□ -0.04
SHROOM3-208ENST00000486758 DCTPP1Q9H773 170 aa14.78□□□□□ -0.04
SHROOM3-208ENST00000486758 ARHGAP45Q92619 1136 aa14.77□□□□□ -0.04
SHROOM3-208ENST00000486758 FRMPD1Q5SYB0 1578 aa14.77□□□□□ -0.05
SHROOM3-208ENST00000486758 TRERF1Q96PN7 1200 aa14.77□□□□□ -0.05
SHROOM3-208ENST00000486758 TRIM5Q9C035 493 aa14.77□□□□□ -0.05
SHROOM3-208ENST00000486758 ABCC3O15438 1527 aa14.77□□□□□ -0.05
SHROOM3-208ENST00000486758 PRR36Q9H6K5 1346 aa14.77□□□□□ -0.05
SHROOM3-208ENST00000486758 ZMYM3Q14202 1370 aa14.77□□□□□ -0.05
SHROOM3-208ENST00000486758 RICTORQ6R327 1708 aa14.76□□□□□ -0.05
SHROOM3-208ENST00000486758 ERICH4A6NGS2 130 aa14.76□□□□□ -0.05
SHROOM3-208ENST00000486758 PI4KAP2A4QPH2 592 aa14.76□□□□□ -0.05
SHROOM3-208ENST00000486758 NUTM2BA6NNL0 878 aaPredicted RBP14.76□□□□□ -0.05
SHROOM3-208ENST00000486758 NUTM2EB1AL46 878 aaPredicted RBP14.76□□□□□ -0.05
SHROOM3-208ENST00000486758 HSP90B1P14625 803 aaKnown RBP14.76□□□□□ -0.05
SHROOM3-208ENST00000486758 PDE1AP54750 535 aa14.76□□□□□ -0.05
SHROOM3-208ENST00000486758 NUTM2AQ8IVF1 878 aaPredicted RBP14.76□□□□□ -0.05
SHROOM3-208ENST00000486758 PI4KAP1Q8N8J0 262 aa14.76□□□□□ -0.05
SHROOM3-208ENST00000486758 MROH2AA6NES4 1674 aa14.76□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms