RNA–Protein interactions for RNA: ENST00000486533.1

COL12A1-208, Transcript of collagen type XII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL12A1, Length 1,554 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1-208ENST00000486533 CASZ1Q86V15 1759 aa11.93□□□□□ -0.5
COL12A1-208ENST00000486533 TATP17735 454 aaPredicted RBP11.92□□□□□ -0.5
COL12A1-208ENST00000486533 ANKRD26Q9UPS8 1709 aa11.92□□□□□ -0.5
COL12A1-208ENST00000486533 TNNT2P45379 298 aaPredicted RBP11.92□□□□□ -0.5
COL12A1-208ENST00000486533 PRIM1P49642 420 aaKnown RBP11.92□□□□□ -0.5
COL12A1-208ENST00000486533 SLC15A2Q16348 729 aa11.92□□□□□ -0.5
COL12A1-208ENST00000486533 PDGFDQ9GZP0 370 aaPredicted RBP11.92□□□□□ -0.5
COL12A1-208ENST00000486533 ZBTB7AO95365 584 aa11.91□□□□□ -0.5
COL12A1-208ENST00000486533 RALBP1Q15311 655 aa11.91□□□□□ -0.5
COL12A1-208ENST00000486533 ERICH6Q7L0X2 663 aa11.91□□□□□ -0.5
COL12A1-208ENST00000486533 DCBLD2Q96PD2 775 aa11.91□□□□□ -0.5
COL12A1-208ENST00000486533 PANK3Q9H999 370 aa11.91□□□□□ -0.5
COL12A1-208ENST00000486533 PAPPAQ13219 1627 aa11.9□□□□□ -0.5
COL12A1-208ENST00000486533 PCDH11XQ9BZA7 1347 aa11.9□□□□□ -0.51
COL12A1-208ENST00000486533 PCDH11YQ9BZA8 1340 aa11.9□□□□□ -0.51
COL12A1-208ENST00000486533 LRRC4BQ9NT99 713 aa11.89□□□□□ -0.51
COL12A1-208ENST00000486533 POLKQ9UBT6 870 aa11.88□□□□□ -0.51
COL12A1-208ENST00000486533 NUDCQ9Y266 331 aa11.88□□□□□ -0.51
COL12A1-208ENST00000486533 ZNF827Q17R98 1081 aa11.88□□□□□ -0.51
COL12A1-208ENST00000486533 SLC27A3Q5K4L6 730 aa11.88□□□□□ -0.51
COL12A1-208ENST00000486533 LHX8Q68G74 356 aa11.88□□□□□ -0.51
COL12A1-208ENST00000486533 NSD2O96028 1365 aa11.88□□□□□ -0.51
COL12A1-208ENST00000486533 UTRNP46939 3433 aa11.87□□□□□ -0.51
COL12A1-208ENST00000486533 MYBBP1AQ9BQG0 1328 aaKnown RBP11.87□□□□□ -0.51
COL12A1-208ENST00000486533 KCNQ4P56696 695 aa11.87□□□□□ -0.51
COL12A1-208ENST00000486533 LY75O60449 1722 aa11.87□□□□□ -0.51
COL12A1-208ENST00000486533 PKD1L3Q7Z443 1732 aa11.87□□□□□ -0.51
COL12A1-208ENST00000486533 EYA1Q99502 592 aa11.86□□□□□ -0.51
COL12A1-208ENST00000486533 MTFR1LQ9H019 292 aa11.86□□□□□ -0.51
COL12A1-208ENST00000486533 CYP27B1O15528 508 aa11.85□□□□□ -0.51
COL12A1-208ENST00000486533 PTGER2P43116 358 aa11.85□□□□□ -0.51
COL12A1-208ENST00000486533 TFCP2L1Q9NZI6 479 aa11.85□□□□□ -0.51
COL12A1-208ENST00000486533 CCNL1Q9UK58 526 aaPredicted RBP11.85□□□□□ -0.51
COL12A1-208ENST00000486533 SPG7Q9UQ90 795 aa11.85□□□□□ -0.51
COL12A1-208ENST00000486533 KNSTRNQ9Y448 316 aa11.85□□□□□ -0.51
COL12A1-208ENST00000486533 NCAPD2Q15021 1401 aa11.85□□□□□ -0.51
COL12A1-208ENST00000486533 EIF4A2Q14240 407 aaKnown RBP11.84□□□□□ -0.51
COL12A1-208ENST00000486533 MPRIPQ6WCQ1 1025 aa11.84□□□□□ -0.51
COL12A1-208ENST00000486533 MORC1Q86VD1 984 aa11.84□□□□□ -0.51
COL12A1-208ENST00000486533 TSPYL2Q9H2G4 693 aaPredicted RBP11.84□□□□□ -0.51
COL12A1-208ENST00000486533 TOGARAM1Q9Y4F4 1720 aa11.84□□□□□ -0.51
COL12A1-208ENST00000486533 ITGB4P16144 1822 aa11.83□□□□□ -0.52
COL12A1-208ENST00000486533 GOLGB1Q14789 3259 aaKnown RBP11.83□□□□□ -0.52
COL12A1-208ENST00000486533 CCDC184Q52MB2 194 aa11.83□□□□□ -0.52
COL12A1-208ENST00000486533 PLCD3Q8N3E9 789 aa11.83□□□□□ -0.52
COL12A1-208ENST00000486533 TUBGCP6Q96RT7 1819 aa11.83□□□□□ -0.52
COL12A1-208ENST00000486533 QSER1Q2KHR3 1735 aa11.82□□□□□ -0.52
COL12A1-208ENST00000486533 PALLDQ8WX93 1383 aa11.82□□□□□ -0.52
COL12A1-208ENST00000486533 RNF123Q5XPI4 1314 aa11.82□□□□□ -0.52
COL12A1-208ENST00000486533 C5P01031 1676 aa11.81□□□□□ -0.52
COL12A1-208ENST00000486533 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.81□□□□□ -0.52
COL12A1-208ENST00000486533 PNPLA7Q6ZV29 1317 aa11.81□□□□□ -0.52
COL12A1-208ENST00000486533 ARXQ96QS3 562 aa11.8□□□□□ -0.52
COL12A1-208ENST00000486533 SGIP1Q9BQI5 828 aa11.8□□□□□ -0.52
COL12A1-208ENST00000486533 FHDC1Q9C0D6 1143 aaPredicted RBP11.8□□□□□ -0.52
COL12A1-208ENST00000486533 IGSF1Q8N6C5 1336 aa11.8□□□□□ -0.52
COL12A1-208ENST00000486533 PHKG2P15735 406 aa11.79□□□□□ -0.52
COL12A1-208ENST00000486533 IRX6P78412 446 aaPredicted RBP11.79□□□□□ -0.52
COL12A1-208ENST00000486533 NKX1-1Q15270 411 aaPredicted RBP11.79□□□□□ -0.52
COL12A1-208ENST00000486533 RASEFQ8IZ41 740 aa11.79□□□□□ -0.52
COL12A1-208ENST00000486533 IFNL2Q8IZJ0 200 aa11.79□□□□□ -0.52
COL12A1-208ENST00000486533 PNISRQ8TF01 805 aaKnown RBP11.79□□□□□ -0.52
COL12A1-208ENST00000486533 SLC16A10Q8TF71 515 aa11.79□□□□□ -0.52
COL12A1-208ENST00000486533 SMARCC1Q92922 1105 aaPredicted RBP11.79□□□□□ -0.52
COL12A1-208ENST00000486533 MS4A3Q96HJ5 214 aa11.79□□□□□ -0.52
COL12A1-208ENST00000486533 TMOD3Q9NYL9 352 aa11.79□□□□□ -0.52
COL12A1-208ENST00000486533 POLD1P28340 1107 aa11.79□□□□□ -0.52
COL12A1-208ENST00000486533 AMER1Q5JTC6 1135 aaPredicted RBP11.79□□□□□ -0.52
COL12A1-208ENST00000486533 PIGBQ92521 554 aa11.79□□□□□ -0.52
COL12A1-208ENST00000486533 SYT17Q9BSW7 474 aa11.79□□□□□ -0.52
COL12A1-208ENST00000486533 TAF1LQ8IZX4 1826 aa11.79□□□□□ -0.52
COL12A1-208ENST00000486533 HMGB2P26583 209 aaKnown RBP11.78□□□□□ -0.52
COL12A1-208ENST00000486533 KLHL34Q8N239 644 aa11.78□□□□□ -0.52
COL12A1-208ENST00000486533 PLEKHG2Q9H7P9 1386 aa11.78□□□□□ -0.52
COL12A1-208ENST00000486533 CCDC136Q96JN2 1154 aa11.77□□□□□ -0.53
COL12A1-208ENST00000486533 C4BP0C0L5 1744 aa11.76□□□□□ -0.53
COL12A1-208ENST00000486533 YY1P25490 414 aa11.76□□□□□ -0.53
COL12A1-208ENST00000486533 CNGB1Q14028 1251 aaPredicted RBP11.76□□□□□ -0.53
COL12A1-208ENST00000486533 PLEKHO1Q53GL0 409 aaPredicted RBP11.76□□□□□ -0.53
COL12A1-208ENST00000486533 CC2D1BQ5T0F9 858 aaKnown RBP11.76□□□□□ -0.53
COL12A1-208ENST00000486533 AEBP1Q8IUX7 1158 aa11.76□□□□□ -0.53
COL12A1-208ENST00000486533 ZBTB47Q9UFB7 747 aaPredicted RBP11.76□□□□□ -0.53
COL12A1-208ENST00000486533 AMOTQ4VCS5 1084 aa11.75□□□□□ -0.53
COL12A1-208ENST00000486533 SULT6B1Q6IMI4 303 aa11.75□□□□□ -0.53
COL12A1-208ENST00000486533 ZNF530Q6P9A1 599 aaPredicted RBP11.75□□□□□ -0.53
COL12A1-208ENST00000486533 COL23A1Q86Y22 540 aaPredicted RBP11.75□□□□□ -0.53
COL12A1-208ENST00000486533 AK7Q96M32 723 aa11.75□□□□□ -0.53
COL12A1-208ENST00000486533 ASAP1Q9ULH1 1129 aa11.75□□□□□ -0.53
COL12A1-208ENST00000486533 LOC102724428A0A0B4J2F2 783 aa11.75□□□□□ -0.53
COL12A1-208ENST00000486533 HSP90AB1P08238 724 aaKnown RBP11.75□□□□□ -0.53
COL12A1-208ENST00000486533 MTHFSP49914 203 aa11.75□□□□□ -0.53
COL12A1-208ENST00000486533 SIK1P57059 783 aa11.75□□□□□ -0.53
COL12A1-208ENST00000486533 MSL1Q68DK7 614 aa11.75□□□□□ -0.53
COL12A1-208ENST00000486533 KIF12Q96FN5 646 aa11.75□□□□□ -0.53
COL12A1-208ENST00000486533 COL24A1Q17RW2 1714 aa11.75□□□□□ -0.53
COL12A1-208ENST00000486533 MAP3K5Q99683 1374 aa11.74□□□□□ -0.53
COL12A1-208ENST00000486533 PER1O15534 1290 aaPredicted RBP11.74□□□□□ -0.53
COL12A1-208ENST00000486533 PHF14O94880 888 aa11.74□□□□□ -0.53
COL12A1-208ENST00000486533 IL13P35225 146 aa11.74□□□□□ -0.53
COL12A1-208ENST00000486533 C1orf141Q5JVX7 400 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms