RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 IFNL1Q8IU54 200 aa10.74□□□□□ -0.69
USP40-216ENST00000485943 KIF12Q96FN5 646 aa10.74□□□□□ -0.69
USP40-216ENST00000485943 ACSBG1Q96GR2 724 aa10.74□□□□□ -0.69
USP40-216ENST00000485943 MAP3K13O43283 966 aa10.73□□□□□ -0.69
USP40-216ENST00000485943 PLEKHO1Q53GL0 409 aaPredicted RBP10.73□□□□□ -0.69
USP40-216ENST00000485943 NBPF14Q5TI25 921 aa10.73□□□□□ -0.69
USP40-216ENST00000485943 NPC1L1Q9UHC9 1359 aa10.73□□□□□ -0.69
USP40-216ENST00000485943 SULT6B1Q6IMI4 303 aa10.72□□□□□ -0.69
USP40-216ENST00000485943 EYA1Q99502 592 aa10.72□□□□□ -0.69
USP40-216ENST00000485943 PEAK1Q9H792 1746 aa10.72□□□□□ -0.69
USP40-216ENST00000485943 PER1O15534 1290 aaPredicted RBP10.71□□□□□ -0.69
USP40-216ENST00000485943 HSP90AB1P08238 724 aaKnown RBP10.71□□□□□ -0.69
USP40-216ENST00000485943 HMGB2P26583 209 aaKnown RBP10.71□□□□□ -0.69
USP40-216ENST00000485943 EN1Q05925 392 aaPredicted RBP10.71□□□□□ -0.69
USP40-216ENST00000485943 RALBP1Q15311 655 aa10.71□□□□□ -0.69
USP40-216ENST00000485943 AMOTQ4VCS5 1084 aa10.71□□□□□ -0.69
USP40-216ENST00000485943 DEFB132Q7Z7B7 95 aa10.71□□□□□ -0.69
USP40-216ENST00000485943 PNNQ9H307 717 aaKnown RBP10.71□□□□□ -0.69
USP40-216ENST00000485943 ANP32CO43423 234 aa10.7□□□□□ -0.7
USP40-216ENST00000485943 HMOX1P09601 288 aa10.7□□□□□ -0.7
USP40-216ENST00000485943 U2AF1L5P0DN76 240 aaPredicted RBP10.7□□□□□ -0.7
USP40-216ENST00000485943 U2AF1Q01081 240 aaKnown RBP eCLIP10.7□□□□□ -0.7
USP40-216ENST00000485943 ZNF530Q6P9A1 599 aaPredicted RBP10.7□□□□□ -0.7
USP40-216ENST00000485943 IFNL2Q8IZJ0 200 aa10.7□□□□□ -0.7
USP40-216ENST00000485943 MARCH10Q8NA82 808 aaPredicted RBP10.7□□□□□ -0.7
USP40-216ENST00000485943 WDR43Q15061 677 aaKnown RBP eCLIP10.69□□□□□ -0.7
USP40-216ENST00000485943 MFRPQ9BY79 579 aa10.69□□□□□ -0.7
USP40-216ENST00000485943 DISP2A7MBM2 1401 aa10.68□□□□□ -0.7
USP40-216ENST00000485943 MAPK8IP3Q9UPT6 1336 aa10.68□□□□□ -0.7
USP40-216ENST00000485943 PRKCSHP14314 528 aaPredicted RBP10.68□□□□□ -0.7
USP40-216ENST00000485943 PPP2R1AP30153 589 aa10.68□□□□□ -0.7
USP40-216ENST00000485943 TMOD3Q9NYL9 352 aa10.68□□□□□ -0.7
USP40-216ENST00000485943 MEGF6O75095 1541 aa10.68□□□□□ -0.7
USP40-216ENST00000485943 IGSF1Q8N6C5 1336 aa10.67□□□□□ -0.7
USP40-216ENST00000485943 MPRIPQ6WCQ1 1025 aa10.67□□□□□ -0.7
USP40-216ENST00000485943 PARD3Q8TEW0 1356 aa10.66□□□□□ -0.7
USP40-216ENST00000485943 MYBBP1AQ9BQG0 1328 aaKnown RBP10.66□□□□□ -0.7
USP40-216ENST00000485943 SBF2Q86WG5 1849 aa10.66□□□□□ -0.7
USP40-216ENST00000485943 CD44P16070 742 aaKnown RBP10.66□□□□□ -0.7
USP40-216ENST00000485943 IL13P35225 146 aa10.66□□□□□ -0.7
USP40-216ENST00000485943 PRIM1P49642 420 aaKnown RBP10.66□□□□□ -0.7
USP40-216ENST00000485943 CABP4P57796 275 aa10.66□□□□□ -0.7
USP40-216ENST00000485943 EZH2Q15910 746 aaKnown RBP10.66□□□□□ -0.7
USP40-216ENST00000485943 POTEHQ6S545 545 aa10.66□□□□□ -0.7
USP40-216ENST00000485943 RTF1Q92541 710 aaKnown RBP10.66□□□□□ -0.7
USP40-216ENST00000485943 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.66□□□□□ -0.75e-7■■■■□ 23.3
USP40-216ENST00000485943 GAS2L2Q8NHY3 880 aa10.65□□□□□ -0.7
USP40-216ENST00000485943 PHF12Q96QT6 1004 aa10.65□□□□□ -0.7
USP40-216ENST00000485943 STK32BQ9NY57 414 aa10.65□□□□□ -0.7
USP40-216ENST00000485943 DOT1LQ8TEK3 1739 aa10.64□□□□□ -0.71
USP40-216ENST00000485943 AEBP1Q8IUX7 1158 aa10.64□□□□□ -0.71
USP40-216ENST00000485943 SMARCC1Q92922 1105 aaPredicted RBP10.64□□□□□ -0.71
USP40-216ENST00000485943 EP400Q96L91 3159 aa10.64□□□□□ -0.71
USP40-216ENST00000485943 TNS1Q9HBL0 1735 aaKnown RBP10.64□□□□□ -0.71
USP40-216ENST00000485943 NHSQ6T4R5 1651 aa10.63□□□□□ -0.71
USP40-216ENST00000485943 KCNQ2O43526 872 aa10.63□□□□□ -0.71
USP40-216ENST00000485943 PHKG2P15735 406 aa10.63□□□□□ -0.71
USP40-216ENST00000485943 TEFQ10587 303 aa10.63□□□□□ -0.71
USP40-216ENST00000485943 DCAF5Q96JK2 942 aa10.63□□□□□ -0.71
USP40-216ENST00000485943 PLSCR1O15162 318 aa10.62□□□□□ -0.71
USP40-216ENST00000485943 PRKAR2BP31323 418 aa10.62□□□□□ -0.71
USP40-216ENST00000485943 AKAP4Q5JQC9 854 aa10.62□□□□□ -0.71
USP40-216ENST00000485943 NPM2Q86SE8 214 aaKnown RBP10.62□□□□□ -0.71
USP40-216ENST00000485943 CCNL1Q9UK58 526 aaPredicted RBP10.62□□□□□ -0.71
USP40-216ENST00000485943 BTAF1O14981 1849 aa10.62□□□□□ -0.71
USP40-216ENST00000485943 PLEKHG2Q9H7P9 1386 aa10.62□□□□□ -0.71
USP40-216ENST00000485943 PKD1L3Q7Z443 1732 aa10.61□□□□□ -0.71
USP40-216ENST00000485943 BCL9O00512 1426 aa10.61□□□□□ -0.71
USP40-216ENST00000485943 PSDA5PKW4 1024 aaPredicted RBP10.61□□□□□ -0.71
USP40-216ENST00000485943 CYP27B1O15528 508 aa10.61□□□□□ -0.71
USP40-216ENST00000485943 R3HDM1Q15032 1099 aaKnown RBP10.61□□□□□ -0.71
USP40-216ENST00000485943 TXNRD1Q16881 649 aa10.61□□□□□ -0.71
USP40-216ENST00000485943 TTC5Q8N0Z6 440 aa10.61□□□□□ -0.71
USP40-216ENST00000485943 EFCAB3Q8N7B9 438 aa10.61□□□□□ -0.71
USP40-216ENST00000485943 FBXO22Q8NEZ5 403 aa10.61□□□□□ -0.71
USP40-216ENST00000485943 GNAT3A8MTJ3 354 aa10.6□□□□□ -0.71
USP40-216ENST00000485943 FCHSD2O94868 740 aa10.6□□□□□ -0.71
USP40-216ENST00000485943 SLC27A3Q5K4L6 730 aa10.6□□□□□ -0.71
USP40-216ENST00000485943 CAMKK2Q96RR4 588 aa10.6□□□□□ -0.71
USP40-216ENST00000485943 PPP1R1BQ9UD71 204 aaPredicted RBP10.6□□□□□ -0.71
USP40-216ENST00000485943 ERVV-2B6SEH9 535 aa10.59□□□□□ -0.71
USP40-216ENST00000485943 NBR1Q14596 966 aa10.59□□□□□ -0.71
USP40-216ENST00000485943 AK7Q96M32 723 aa10.59□□□□□ -0.71
USP40-216ENST00000485943 TFCP2L1Q9NZI6 479 aa10.59□□□□□ -0.71
USP40-216ENST00000485943 SHANK3Q9BYB0 1731 aa10.58□□□□□ -0.72
USP40-216ENST00000485943 PALLDQ8WX93 1383 aa10.58□□□□□ -0.72
USP40-216ENST00000485943 C19orf67A6NJJ6 358 aa10.58□□□□□ -0.72
USP40-216ENST00000485943 PPP1R37O75864 691 aa10.58□□□□□ -0.72
USP40-216ENST00000485943 LMOD3Q0VAK6 560 aa10.58□□□□□ -0.72
USP40-216ENST00000485943 MTHFSDQ2M296 383 aaKnown RBP10.58□□□□□ -0.72
USP40-216ENST00000485943 TPRNQ4KMQ1 711 aa10.58□□□□□ -0.72
USP40-216ENST00000485943 PRKRIP1Q9H875 184 aaPredicted RBP10.58□□□□□ -0.72
USP40-216ENST00000485943 ITGB4P16144 1822 aa10.58□□□□□ -0.72
USP40-216ENST00000485943 RGPD3A6NKT7 1758 aaPredicted RBP10.57□□□□□ -0.72
USP40-216ENST00000485943 RGPD4Q7Z3J3 1758 aa10.57□□□□□ -0.72
USP40-216ENST00000485943 KDRP35968 1356 aa10.57□□□□□ -0.72
USP40-216ENST00000485943 MAP3K5Q99683 1374 aa10.57□□□□□ -0.72
USP40-216ENST00000485943 ATP6V1AP38606 617 aa10.57□□□□□ -0.72
USP40-216ENST00000485943 MRS2Q9HD23 443 aa10.57□□□□□ -0.72
USP40-216ENST00000485943 NCAPD2Q15021 1401 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms