RNA–Protein interactions for RNA: ENST00000485610.5

SMARCD3-212, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 1 (best)

Gene SMARCD3, Length 1,480 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-212ENST00000485610 TRMT2AQ8IZ69 625 aaKnown RBP23.07■■□□□ 1.28
SMARCD3-212ENST00000485610 LAS1LQ9Y4W2 734 aaKnown RBP23.07■■□□□ 1.28
SMARCD3-212ENST00000485610 FANCIQ9NVI1 1328 aa23.07■■□□□ 1.28
SMARCD3-212ENST00000485610 DUSP27Q5VZP5 1158 aa23.06■■□□□ 1.28
SMARCD3-212ENST00000485610 SLC52A2Q9HAB3 445 aa23.06■■□□□ 1.28
SMARCD3-212ENST00000485610 ERVV-2B6SEH9 535 aa23.05■■□□□ 1.28
SMARCD3-212ENST00000485610 TAF7Q15545 349 aaPredicted RBP23.05■■□□□ 1.28
SMARCD3-212ENST00000485610 BABAM1Q9NWV8 329 aa23.05■■□□□ 1.28
SMARCD3-212ENST00000485610 CHL1O00533 1208 aa23.05■■□□□ 1.28
SMARCD3-212ENST00000485610 POTEAQ6S8J7 498 aa23.05■■□□□ 1.28
SMARCD3-212ENST00000485610 NHSQ6T4R5 1651 aa23.04■■□□□ 1.28
SMARCD3-212ENST00000485610 UBR2Q8IWV8 1755 aa23.04■■□□□ 1.28
SMARCD3-212ENST00000485610 RGS12O14924 1447 aa23.04■■□□□ 1.28
SMARCD3-212ENST00000485610 TSR2Q969E8 191 aaKnown RBP23.04■■□□□ 1.28
SMARCD3-212ENST00000485610 MBIPQ9NS73 344 aa23.04■■□□□ 1.28
SMARCD3-212ENST00000485610 TSPYL4Q9UJ04 414 aa23.03■■□□□ 1.28
SMARCD3-212ENST00000485610 BCL9O00512 1426 aa23.02■■□□□ 1.28
SMARCD3-212ENST00000485610 CABP4P57796 275 aa23.02■■□□□ 1.28
SMARCD3-212ENST00000485610 NFATC2IPQ8NCF5 419 aa23■■□□□ 1.27
SMARCD3-212ENST00000485610 BTBD11A6QL63 1104 aa22.99■■□□□ 1.27
SMARCD3-212ENST00000485610 TMOD3Q9NYL9 352 aa22.99■■□□□ 1.27
SMARCD3-212ENST00000485610 KRT27Q7Z3Y8 459 aa22.98■■□□□ 1.27
SMARCD3-212ENST00000485610 MIS18AQ9NYP9 233 aa22.98■■□□□ 1.27
SMARCD3-212ENST00000485610 BTAF1O14981 1849 aa22.98■■□□□ 1.27
SMARCD3-212ENST00000485610 C5P01031 1676 aa22.95■■□□□ 1.26
SMARCD3-212ENST00000485610 EXOSC9Q06265 439 aaKnown RBP22.95■■□□□ 1.26
SMARCD3-212ENST00000485610 LAMB4A4D0S4 1761 aa22.95■■□□□ 1.26
SMARCD3-212ENST00000485610 PRIM1P49642 420 aaKnown RBP22.94■■□□□ 1.26
SMARCD3-212ENST00000485610 CACNA1FO60840 1977 aa22.94■■□□□ 1.26
SMARCD3-212ENST00000485610 ZNF790Q6PG37 636 aa22.93■■□□□ 1.26
SMARCD3-212ENST00000485610 PIGBQ92521 554 aa22.93■■□□□ 1.26
SMARCD3-212ENST00000485610 SYTL4Q96C24 671 aaPredicted RBP22.93■■□□□ 1.26
SMARCD3-212ENST00000485610 ACSBG1Q96GR2 724 aa22.93■■□□□ 1.26
SMARCD3-212ENST00000485610 KCPQ6ZWJ8 1503 aa22.93■■□□□ 1.26
SMARCD3-212ENST00000485610 CT47B1P0C2W7 299 aaPredicted RBP22.92■■□□□ 1.26
SMARCD3-212ENST00000485610 FAM182BQ5T319 152 aa22.92■■□□□ 1.26
SMARCD3-212ENST00000485610 TTC5Q8N0Z6 440 aa22.92■■□□□ 1.26
SMARCD3-212ENST00000485610 SLC39A6Q13433 755 aa22.92■■□□□ 1.26
SMARCD3-212ENST00000485610 KCNQ3O43525 872 aa22.91■■□□□ 1.26
SMARCD3-212ENST00000485610 FAM196AQ6ZSG2 479 aa22.91■■□□□ 1.26
SMARCD3-212ENST00000485610 EIF4A1P60842 406 aaKnown RBP22.9■■□□□ 1.26
SMARCD3-212ENST00000485610 SOS1Q07889 1333 aaPredicted RBP22.89■■□□□ 1.25
SMARCD3-212ENST00000485610 TWISTNBQ3B726 338 aaPredicted RBP22.89■■□□□ 1.25
SMARCD3-212ENST00000485610 C8orf58Q8NAV2 365 aa22.89■■□□□ 1.25
SMARCD3-212ENST00000485610 HEG1Q9ULI3 1381 aa22.88■■□□□ 1.25
SMARCD3-212ENST00000485610 CICQ96RK0 1608 aaPredicted RBP22.88■■□□□ 1.25
SMARCD3-212ENST00000485610 KRT24Q2M2I5 525 aa22.88■■□□□ 1.25
SMARCD3-212ENST00000485610 ZNF831Q5JPB2 1677 aa22.88■■□□□ 1.25
SMARCD3-212ENST00000485610 TSPYL6Q8N831 410 aa22.87■■□□□ 1.25
SMARCD3-212ENST00000485610 LY75O60449 1722 aa22.87■■□□□ 1.25
SMARCD3-212ENST00000485610 KCNQ2O43526 872 aa22.86■■□□□ 1.25
SMARCD3-212ENST00000485610 HOXB7P09629 217 aa22.86■■□□□ 1.25
SMARCD3-212ENST00000485610 ZNF428Q96B54 188 aa22.86■■□□□ 1.25
SMARCD3-212ENST00000485610 ZNF496Q96IT1 587 aaPredicted RBP22.86■■□□□ 1.25
SMARCD3-212ENST00000485610 FMNL2Q96PY5 1086 aa22.86■■□□□ 1.25
SMARCD3-212ENST00000485610 ATG3Q9NT62 314 aa22.86■■□□□ 1.25
SMARCD3-212ENST00000485610 RCAN3Q9UKA8 241 aa22.86■■□□□ 1.25
SMARCD3-212ENST00000485610 ASAP1Q9ULH1 1129 aa22.86■■□□□ 1.25
SMARCD3-212ENST00000485610 TJP1Q07157 1748 aa22.85■■□□□ 1.25
SMARCD3-212ENST00000485610 TNS1Q9HBL0 1735 aaKnown RBP22.85■■□□□ 1.25
SMARCD3-212ENST00000485610 ELL2O00472 640 aaPredicted RBP22.85■■□□□ 1.25
SMARCD3-212ENST00000485610 VAMP4O75379 141 aa22.85■■□□□ 1.25
SMARCD3-212ENST00000485610 SMARCC1Q92922 1105 aaPredicted RBP22.83■■□□□ 1.25
SMARCD3-212ENST00000485610 GIGYF1O75420 1035 aaPredicted RBP22.82■■□□□ 1.24
SMARCD3-212ENST00000485610 BCL11BQ9C0K0 894 aaPredicted RBP22.82■■□□□ 1.24
SMARCD3-212ENST00000485610 PALLDQ8WX93 1383 aa22.82■■□□□ 1.24
SMARCD3-212ENST00000485610 PTCD1O75127 700 aaKnown RBP22.8■■□□□ 1.24
SMARCD3-212ENST00000485610 SNRPA1P09661 255 aaKnown RBP22.8■■□□□ 1.24
SMARCD3-212ENST00000485610 RARSP54136 660 aaKnown RBP22.8■■□□□ 1.24
SMARCD3-212ENST00000485610 PTF1AQ7RTS3 328 aa22.8■■□□□ 1.24
SMARCD3-212ENST00000485610 CHMP4AQ9BY43 222 aa22.8■■□□□ 1.24
SMARCD3-212ENST00000485610 COL5A3P25940 1745 aaPredicted RBP22.8■■□□□ 1.24
SMARCD3-212ENST00000485610 RGPD3A6NKT7 1758 aaPredicted RBP22.8■■□□□ 1.24
SMARCD3-212ENST00000485610 RGPD4Q7Z3J3 1758 aa22.8■■□□□ 1.24
SMARCD3-212ENST00000485610 ALDH1L2Q3SY69 923 aa22.79■■□□□ 1.24
SMARCD3-212ENST00000485610 VSIG10Q8N0Z9 540 aa22.79■■□□□ 1.24
SMARCD3-212ENST00000485610 TAF1LQ8IZX4 1826 aa22.79■■□□□ 1.24
SMARCD3-212ENST00000485610 EP400Q96L91 3159 aa22.78■■□□□ 1.24
SMARCD3-212ENST00000485610 HDGFL1Q5TGJ6 251 aa22.78■■□□□ 1.24
SMARCD3-212ENST00000485610 RBM42Q9BTD8 480 aaKnown RBP22.78■■□□□ 1.24
SMARCD3-212ENST00000485610 TRIM37O94972 964 aa22.77■■□□□ 1.24
SMARCD3-212ENST00000485610 CCDC30Q5VVM6 783 aa22.77■■□□□ 1.24
SMARCD3-212ENST00000485610 SSH1Q8WYL5 1049 aa22.77■■□□□ 1.24
SMARCD3-212ENST00000485610 SMC4Q9NTJ3 1288 aa22.77■■□□□ 1.24
SMARCD3-212ENST00000485610 PRAMEF22A3QJZ6 481 aa22.76■■□□□ 1.23
SMARCD3-212ENST00000485610 BCL2L13Q9BXK5 485 aa22.75■■□□□ 1.23
SMARCD3-212ENST00000485610 RREB1Q92766 1687 aa22.75■■□□□ 1.23
SMARCD3-212ENST00000485610 LOC102724428A0A0B4J2F2 783 aa22.74■■□□□ 1.23
SMARCD3-212ENST00000485610 EIF2S2P20042 333 aaKnown RBP22.74■■□□□ 1.23
SMARCD3-212ENST00000485610 SIK1P57059 783 aa22.74■■□□□ 1.23
SMARCD3-212ENST00000485610 STK31Q9BXU1 1019 aa22.74■■□□□ 1.23
SMARCD3-212ENST00000485610 TEX13AQ9BXU3 409 aaPredicted RBP22.74■■□□□ 1.23
SMARCD3-212ENST00000485610 BCAR3O75815 825 aa22.73■■□□□ 1.23
SMARCD3-212ENST00000485610 NECTIN2Q92692 538 aa22.73■■□□□ 1.23
SMARCD3-212ENST00000485610 SLC4A9Q96Q91 983 aa22.73■■□□□ 1.23
SMARCD3-212ENST00000485610 SUPT16HQ9Y5B9 1047 aaKnown RBP22.73■■□□□ 1.23
SMARCD3-212ENST00000485610 KIF16BQ96L93 1317 aa22.72■■□□□ 1.23
SMARCD3-212ENST00000485610 MYH14Q7Z406 1995 aaKnown RBP22.72■■□□□ 1.23
SMARCD3-212ENST00000485610 TCERG1O14776 1098 aaKnown RBP22.72■■□□□ 1.23
SMARCD3-212ENST00000485610 BRPF1P55201 1214 aaPredicted RBP22.72■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms