RNA–Protein interactions for RNA: ENST00000481754.1

GPN1-208, Transcript of GPN-loop GTPase 1, human

TSL 4

Gene GPN1, Length 537 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
GPN1-208	ENST00000481754	BCL11B	Q9C0K0	894 aa	Predicted RBP	13.64	□□□□□ -0.23
GPN1-208	ENST00000481754	LRRC37A3	O60309	1634 aa		13.64	□□□□□ -0.23
GPN1-208	ENST00000481754	CHL1	O00533	1208 aa		13.63	□□□□□ -0.23
GPN1-208	ENST00000481754	PIGB	Q92521	554 aa		13.63	□□□□□ -0.23
GPN1-208	ENST00000481754	SMARCC1	Q92922	1105 aa	Predicted RBP	13.63	□□□□□ -0.23
GPN1-208	ENST00000481754	MIS18A	Q9NYP9	233 aa		13.63	□□□□□ -0.23
GPN1-208	ENST00000481754	KCNQ2	O43526	872 aa		13.62	□□□□□ -0.23
GPN1-208	ENST00000481754	TRIM37	O94972	964 aa		13.62	□□□□□ -0.23
GPN1-208	ENST00000481754	ZNF853	P0CG23	659 aa		13.62	□□□□□ -0.23
GPN1-208	ENST00000481754	HMGB2	P26583	209 aa	Known RBP	13.61	□□□□□ -0.23
GPN1-208	ENST00000481754	SLFN5	Q08AF3	891 aa		13.61	□□□□□ -0.23
GPN1-208	ENST00000481754	SF3B2	Q13435	895 aa	Known RBP	13.61	□□□□□ -0.23
GPN1-208	ENST00000481754	ZNF790	Q6PG37	636 aa		13.61	□□□□□ -0.23
GPN1-208	ENST00000481754	WNK3	Q9BYP7	1800 aa		13.61	□□□□□ -0.23
GPN1-208	ENST00000481754	CDCA7L	Q96GN5	454 aa		13.6	□□□□□ -0.23
GPN1-208	ENST00000481754	CHMP4A	Q9BY43	222 aa		13.6	□□□□□ -0.23
GPN1-208	ENST00000481754	MBIP	Q9NS73	344 aa		13.6	□□□□□ -0.23
GPN1-208	ENST00000481754	SLC39A6	Q13433	755 aa		13.59	□□□□□ -0.23
GPN1-208	ENST00000481754	CCDC125	Q86Z20	511 aa		13.59	□□□□□ -0.23
GPN1-208	ENST00000481754	FMNL2	Q96PY5	1086 aa		13.59	□□□□□ -0.23
GPN1-208	ENST00000481754	ATG3	Q9NT62	314 aa		13.59	□□□□□ -0.23
GPN1-208	ENST00000481754	ASAP1	Q9ULH1	1129 aa		13.59	□□□□□ -0.23
GPN1-208	ENST00000481754	APBA3	O96018	575 aa		13.58	□□□□□ -0.24
GPN1-208	ENST00000481754	TSR2	Q969E8	191 aa	Known RBP	13.58	□□□□□ -0.24
GPN1-208	ENST00000481754	SPINK5	Q9NQ38	1064 aa	Predicted RBP	13.58	□□□□□ -0.24
GPN1-208	ENST00000481754	FANCI	Q9NVI1	1328 aa		13.58	□□□□□ -0.24
GPN1-208	ENST00000481754	PTCD1	O75127	700 aa	Known RBP	13.57	□□□□□ -0.24
GPN1-208	ENST00000481754	TRMT2A	Q8IZ69	625 aa	Known RBP	13.57	□□□□□ -0.24
GPN1-208	ENST00000481754	RBM42	Q9BTD8	480 aa	Known RBP	13.57	□□□□□ -0.24
GPN1-208	ENST00000481754	TEX13A	Q9BXU3	409 aa	Predicted RBP	13.57	□□□□□ -0.24
GPN1-208	ENST00000481754	MRC1	P22897	1456 aa		13.56	□□□□□ -0.24
GPN1-208	ENST00000481754	KCNQ3	O43525	872 aa		13.56	□□□□□ -0.24
GPN1-208	ENST00000481754	SNRPA1	P09661	255 aa	Known RBP	13.56	□□□□□ -0.24
GPN1-208	ENST00000481754	EIF4A1	P60842	406 aa	Known RBP	13.56	□□□□□ -0.24
GPN1-208	ENST00000481754	ZNF496	Q96IT1	587 aa	Predicted RBP	13.56	□□□□□ -0.24
GPN1-208	ENST00000481754	SHANK3	Q9BYB0	1731 aa		13.56	□□□□□ -0.24
GPN1-208	ENST00000481754	EXOSC9	Q06265	439 aa	Known RBP	13.55	□□□□□ -0.24
GPN1-208	ENST00000481754	DUSP27	Q5VZP5	1158 aa		13.55	□□□□□ -0.24
GPN1-208	ENST00000481754	PTF1A	Q7RTS3	328 aa		13.55	□□□□□ -0.24
GPN1-208	ENST00000481754	VSIG10	Q8N0Z9	540 aa		13.55	□□□□□ -0.24
GPN1-208	ENST00000481754	SOS1	Q07889	1333 aa	Predicted RBP	13.55	□□□□□ -0.24
GPN1-208	ENST00000481754	PALLD	Q8WX93	1383 aa		13.55	□□□□□ -0.24
GPN1-208	ENST00000481754	LOC102724428	A0A0B4J2F2	783 aa		13.54	□□□□□ -0.24
GPN1-208	ENST00000481754	PLSCR1	O15162	318 aa		13.54	□□□□□ -0.24
GPN1-208	ENST00000481754	STARD3NL	O95772	234 aa		13.54	□□□□□ -0.24
GPN1-208	ENST00000481754	CT47B1	P0C2W7	299 aa	Predicted RBP	13.54	□□□□□ -0.24
GPN1-208	ENST00000481754	ATP6V1A	P38606	617 aa		13.54	□□□□□ -0.24
GPN1-208	ENST00000481754	SIK1	P57059	783 aa		13.54	□□□□□ -0.24
GPN1-208	ENST00000481754	ADAMTS7	Q9UKP4	1686 aa		13.53	□□□□□ -0.24
GPN1-208	ENST00000481754	DLG5	Q8TDM6	1919 aa		13.53	□□□□□ -0.24
GPN1-208	ENST00000481754	KAT6B	Q8WYB5	2073 aa		13.53	□□□□□ -0.24
GPN1-208	ENST00000481754	ELL2	O00472	640 aa	Predicted RBP	13.53	□□□□□ -0.24
GPN1-208	ENST00000481754	GIGYF1	O75420	1035 aa	Predicted RBP	13.53	□□□□□ -0.24
GPN1-208	ENST00000481754	HOXB7	P09629	217 aa		13.53	□□□□□ -0.24
GPN1-208	ENST00000481754	BAG6	P46379	1132 aa		13.53	□□□□□ -0.24
GPN1-208	ENST00000481754	TWISTNB	Q3B726	338 aa	Predicted RBP	13.53	□□□□□ -0.24
GPN1-208	ENST00000481754	SLC27A3	Q5K4L6	730 aa		13.53	□□□□□ -0.24
GPN1-208	ENST00000481754	C8orf58	Q8NAV2	365 aa		13.53	□□□□□ -0.24
GPN1-208	ENST00000481754	SCN11A	Q9UI33	1791 aa		13.53	□□□□□ -0.24
GPN1-208	ENST00000481754	ZNF428	Q96B54	188 aa		13.52	□□□□□ -0.25
GPN1-208	ENST00000481754	CCNL1	Q9UK58	526 aa	Predicted RBP	13.52	□□□□□ -0.25
GPN1-208	ENST00000481754	HEG1	Q9ULI3	1381 aa		13.52	□□□□□ -0.25
GPN1-208	ENST00000481754	BRWD3	Q6RI45	1802 aa		13.52	□□□□□ -0.25
GPN1-208	ENST00000481754	CENPB	P07199	599 aa	Predicted RBP	13.51	□□□□□ -0.25
GPN1-208	ENST00000481754	EIF2S2	P20042	333 aa	Known RBP	13.51	□□□□□ -0.25
GPN1-208	ENST00000481754	CCDC30	Q5VVM6	783 aa		13.51	□□□□□ -0.25
GPN1-208	ENST00000481754	VAMP4	O75379	141 aa		13.5	□□□□□ -0.25
GPN1-208	ENST00000481754	KRT24	Q2M2I5	525 aa		13.5	□□□□□ -0.25
GPN1-208	ENST00000481754	HDGFL1	Q5TGJ6	251 aa		13.5	□□□□□ -0.25
GPN1-208	ENST00000481754	NPM2	Q86SE8	214 aa	Known RBP	13.5	□□□□□ -0.25
GPN1-208	ENST00000481754	TSPYL6	Q8N831	410 aa		13.5	□□□□□ -0.25
GPN1-208	ENST00000481754	TXNRD1	Q16881	649 aa		13.49	□□□□□ -0.25
GPN1-208	ENST00000481754	DNAJC10	Q8IXB1	793 aa		13.49	□□□□□ -0.25
GPN1-208	ENST00000481754	STK31	Q9BXU1	1019 aa		13.49	□□□□□ -0.25
GPN1-208	ENST00000481754	DOT1L	Q8TEK3	1739 aa		13.49	□□□□□ -0.25
GPN1-208	ENST00000481754	TOGARAM1	Q9Y4F4	1720 aa		13.48	□□□□□ -0.25
GPN1-208	ENST00000481754	EP400	Q96L91	3159 aa		13.48	□□□□□ -0.25
GPN1-208	ENST00000481754	NHS	Q6T4R5	1651 aa		13.48	□□□□□ -0.25
GPN1-208	ENST00000481754	EN1	Q05925	392 aa	Predicted RBP	13.48	□□□□□ -0.25
GPN1-208	ENST00000481754	USP16	Q9Y5T5	823 aa		13.48	□□□□□ -0.25
GPN1-208	ENST00000481754	NECTIN2	Q92692	538 aa		13.47	□□□□□ -0.25
GPN1-208	ENST00000481754	UPF1	Q92900	1129 aa	Known RBP eCLIP	13.47	□□□□□ -0.25
GPN1-208	ENST00000481754	SLC4A9	Q96Q91	983 aa		13.47	□□□□□ -0.25
GPN1-208	ENST00000481754	DBF4	Q9UBU7	674 aa	Predicted RBP	13.47	□□□□□ -0.25
GPN1-208	ENST00000481754	PRAMEF22	A3QJZ6	481 aa		13.46	□□□□□ -0.25
GPN1-208	ENST00000481754	CYP19A1	P11511	503 aa	Predicted RBP	13.46	□□□□□ -0.25
GPN1-208	ENST00000481754	ITPK1	Q13572	414 aa		13.46	□□□□□ -0.25
GPN1-208	ENST00000481754	ALDH1L2	Q3SY69	923 aa		13.46	□□□□□ -0.25
GPN1-208	ENST00000481754	CAMKK2	Q96RR4	588 aa		13.46	□□□□□ -0.25
GPN1-208	ENST00000481754	ERBB4	Q15303	1308 aa		13.45	□□□□□ -0.26
GPN1-208	ENST00000481754	KCNQ4	P56696	695 aa		13.45	□□□□□ -0.26
GPN1-208	ENST00000481754	EZH2	Q15910	746 aa	Known RBP	13.45	□□□□□ -0.26
GPN1-208	ENST00000481754	RC3H1	Q5TC82	1133 aa	Known RBP	13.45	□□□□□ -0.26
GPN1-208	ENST00000481754	PROM2	Q8N271	834 aa		13.45	□□□□□ -0.26
GPN1-208	ENST00000481754	CCDC87	Q9NVE4	849 aa		13.45	□□□□□ -0.26
GPN1-208	ENST00000481754	HYPK	Q9NX55	129 aa		13.45	□□□□□ -0.26
GPN1-208	ENST00000481754	RCAN3	Q9UKA8	241 aa		13.45	□□□□□ -0.26
GPN1-208	ENST00000481754	ITGB4	P16144	1822 aa		13.45	□□□□□ -0.26
GPN1-208	ENST00000481754	KCP	Q6ZWJ8	1503 aa		13.44	□□□□□ -0.26
GPN1-208	ENST00000481754	A1BG	P04217	495 aa		13.44	□□□□□ -0.26

Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms