RNA–Protein interactions for RNA: ENST00000481502.5

SYNE1-225, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 585 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-225ENST00000481502 SEPT12Q8IYM1 358 aa10.72□□□□□ -0.69
SYNE1-225ENST00000481502 DDX54Q8TDD1 881 aaKnown RBP10.72□□□□□ -0.69
SYNE1-225ENST00000481502 SALL2Q9Y467 1007 aaPredicted RBP10.72□□□□□ -0.69
SYNE1-225ENST00000481502 HOXB7P09629 217 aa10.71□□□□□ -0.69
SYNE1-225ENST00000481502 CABP4P57796 275 aa10.71□□□□□ -0.69
SYNE1-225ENST00000481502 C1QBPQ07021 282 aaKnown RBP10.71□□□□□ -0.69
SYNE1-225ENST00000481502 MARCH10Q8NA82 808 aaPredicted RBP10.71□□□□□ -0.69
SYNE1-225ENST00000481502 LGR6Q9HBX8 967 aa10.71□□□□□ -0.69
SYNE1-225ENST00000481502 RGS17Q9UGC6 210 aaPredicted RBP10.71□□□□□ -0.69
SYNE1-225ENST00000481502 LRRC37A3O60309 1634 aa10.7□□□□□ -0.7
SYNE1-225ENST00000481502 KDM6AO15550 1401 aaPredicted RBP10.7□□□□□ -0.7
SYNE1-225ENST00000481502 FAM196AQ6ZSG2 479 aa10.7□□□□□ -0.7
SYNE1-225ENST00000481502 SCN11AQ9UI33 1791 aa10.7□□□□□ -0.7
SYNE1-225ENST00000481502 BTBD11A6QL63 1104 aa10.69□□□□□ -0.7
SYNE1-225ENST00000481502 DCTN1Q14203 1278 aa10.69□□□□□ -0.7
SYNE1-225ENST00000481502 NFATC2IPQ8NCF5 419 aa10.69□□□□□ -0.7
SYNE1-225ENST00000481502 SHANK3Q9BYB0 1731 aa10.69□□□□□ -0.7
SYNE1-225ENST00000481502 HEG1Q9ULI3 1381 aa10.68□□□□□ -0.7
SYNE1-225ENST00000481502 FANCIQ9NVI1 1328 aa10.68□□□□□ -0.7
SYNE1-225ENST00000481502 ZNF790Q6PG37 636 aa10.68□□□□□ -0.7
SYNE1-225ENST00000481502 KRT27Q7Z3Y8 459 aa10.68□□□□□ -0.7
SYNE1-225ENST00000481502 VSIG10Q8N0Z9 540 aa10.68□□□□□ -0.7
SYNE1-225ENST00000481502 SMARCC1Q92922 1105 aaPredicted RBP10.68□□□□□ -0.7
SYNE1-225ENST00000481502 CDCA7LQ96GN5 454 aa10.68□□□□□ -0.7
SYNE1-225ENST00000481502 SPINK5Q9NQ38 1064 aaPredicted RBP10.68□□□□□ -0.7
SYNE1-225ENST00000481502 MBIPQ9NS73 344 aa10.68□□□□□ -0.7
SYNE1-225ENST00000481502 TMOD3Q9NYL9 352 aa10.68□□□□□ -0.7
SYNE1-225ENST00000481502 TSPYL4Q9UJ04 414 aa10.68□□□□□ -0.7
SYNE1-225ENST00000481502 A0A0G2JS52 829 aa10.67□□□□□ -0.7
SYNE1-225ENST00000481502 BRPF1P55201 1214 aaPredicted RBP10.67□□□□□ -0.7
SYNE1-225ENST00000481502 MYT1Q01538 1121 aa10.67□□□□□ -0.7
SYNE1-225ENST00000481502 TTC5Q8N0Z6 440 aa10.67□□□□□ -0.7
SYNE1-225ENST00000481502 TEX13AQ9BXU3 409 aaPredicted RBP10.67□□□□□ -0.7
SYNE1-225ENST00000481502 EIF4A1P60842 406 aaKnown RBP10.66□□□□□ -0.7
SYNE1-225ENST00000481502 ALDH1L2Q3SY69 923 aa10.66□□□□□ -0.7
SYNE1-225ENST00000481502 POTEAQ6S8J7 498 aa10.66□□□□□ -0.7
SYNE1-225ENST00000481502 THUMPD2Q9BTF0 503 aaKnown RBP10.66□□□□□ -0.7
SYNE1-225ENST00000481502 SIPA1L3O60292 1781 aaPredicted RBP10.65□□□□□ -0.7
SYNE1-225ENST00000481502 PRIM1P49642 420 aaKnown RBP10.65□□□□□ -0.7
SYNE1-225ENST00000481502 PIGBQ92521 554 aa10.65□□□□□ -0.7
SYNE1-225ENST00000481502 FMNL2Q96PY5 1086 aa10.65□□□□□ -0.7
SYNE1-225ENST00000481502 BCL11BQ9C0K0 894 aaPredicted RBP10.65□□□□□ -0.7
SYNE1-225ENST00000481502 LAS1LQ9Y4W2 734 aaKnown RBP10.65□□□□□ -0.7
SYNE1-225ENST00000481502 VAMP4O75379 141 aa10.64□□□□□ -0.71
SYNE1-225ENST00000481502 SNRPA1P09661 255 aaKnown RBP10.64□□□□□ -0.71
SYNE1-225ENST00000481502 EXOSC9Q06265 439 aaKnown RBP10.64□□□□□ -0.71
SYNE1-225ENST00000481502 TWISTNBQ3B726 338 aaPredicted RBP10.64□□□□□ -0.71
SYNE1-225ENST00000481502 ERBB4Q15303 1308 aa10.63□□□□□ -0.71
SYNE1-225ENST00000481502 KDM3BQ7LBC6 1761 aa10.63□□□□□ -0.71
SYNE1-225ENST00000481502 GIGYF1O75420 1035 aaPredicted RBP10.63□□□□□ -0.71
SYNE1-225ENST00000481502 RGS12O14924 1447 aa10.62□□□□□ -0.71
SYNE1-225ENST00000481502 CCDC30Q5VVM6 783 aa10.62□□□□□ -0.71
SYNE1-225ENST00000481502 GOLGA6L2Q8N9W4 650 aaPredicted RBP10.62□□□□□ -0.71
SYNE1-225ENST00000481502 TSR2Q969E8 191 aaKnown RBP10.62□□□□□ -0.71
SYNE1-225ENST00000481502 ATG3Q9NT62 314 aa10.62□□□□□ -0.71
SYNE1-225ENST00000481502 RCAN3Q9UKA8 241 aa10.62□□□□□ -0.71
SYNE1-225ENST00000481502 VIRMAQ69YN4 1812 aaKnown RBP10.62□□□□□ -0.71
SYNE1-225ENST00000481502 KAT6BQ8WYB5 2073 aa10.62□□□□□ -0.71
SYNE1-225ENST00000481502 SENP3-EIF4A1A0A087X0R7 540 aa10.61□□□□□ -0.71
SYNE1-225ENST00000481502 PLSCR1O15162 318 aa10.61□□□□□ -0.71
SYNE1-225ENST00000481502 RARSP54136 660 aaKnown RBP10.61□□□□□ -0.71
SYNE1-225ENST00000481502 CCDC125Q86Z20 511 aa10.61□□□□□ -0.71
SYNE1-225ENST00000481502 C8orf58Q8NAV2 365 aa10.61□□□□□ -0.71
SYNE1-225ENST00000481502 ARHGAP45Q92619 1136 aa10.61□□□□□ -0.71
SYNE1-225ENST00000481502 MIS18AQ9NYP9 233 aa10.61□□□□□ -0.71
SYNE1-225ENST00000481502 ZNF831Q5JPB2 1677 aa10.6□□□□□ -0.71
SYNE1-225ENST00000481502 PAPPAQ13219 1627 aa10.6□□□□□ -0.71
SYNE1-225ENST00000481502 MS4A1P11836 297 aa10.6□□□□□ -0.71
SYNE1-225ENST00000481502 SYTL4Q96C24 671 aaPredicted RBP10.6□□□□□ -0.71
SYNE1-225ENST00000481502 ZNF496Q96IT1 587 aaPredicted RBP10.6□□□□□ -0.71
SYNE1-225ENST00000481502 TOGARAM1Q9Y4F4 1720 aa10.6□□□□□ -0.71
SYNE1-225ENST00000481502 ITGB4P16144 1822 aa10.6□□□□□ -0.71
SYNE1-225ENST00000481502 NHSQ6T4R5 1651 aa10.6□□□□□ -0.71
SYNE1-225ENST00000481502 RNF123Q5XPI4 1314 aa10.59□□□□□ -0.71
SYNE1-225ENST00000481502 KIF16BQ96L93 1317 aa10.59□□□□□ -0.71
SYNE1-225ENST00000481502 IPO8O15397 1037 aaKnown RBP10.59□□□□□ -0.71
SYNE1-225ENST00000481502 STARD3NLO95772 234 aa10.59□□□□□ -0.71
SYNE1-225ENST00000481502 SLC27A3Q5K4L6 730 aa10.59□□□□□ -0.71
SYNE1-225ENST00000481502 STK31Q9BXU1 1019 aa10.59□□□□□ -0.71
SYNE1-225ENST00000481502 DBF4Q9UBU7 674 aaPredicted RBP10.59□□□□□ -0.71
SYNE1-225ENST00000481502 ASAP1Q9ULH1 1129 aa10.59□□□□□ -0.71
SYNE1-225ENST00000481502 UBR2Q8IWV8 1755 aa10.59□□□□□ -0.71
SYNE1-225ENST00000481502 CICQ96RK0 1608 aaPredicted RBP10.58□□□□□ -0.72
SYNE1-225ENST00000481502 DOT1LQ8TEK3 1739 aa10.58□□□□□ -0.72
SYNE1-225ENST00000481502 CACNA1FO60840 1977 aa10.58□□□□□ -0.72
SYNE1-225ENST00000481502 PALLDQ8WX93 1383 aa10.58□□□□□ -0.72
SYNE1-225ENST00000481502 LOC102724428A0A0B4J2F2 783 aa10.58□□□□□ -0.72
SYNE1-225ENST00000481502 KCNQ3O43525 872 aa10.58□□□□□ -0.72
SYNE1-225ENST00000481502 KCNQ2O43526 872 aa10.58□□□□□ -0.72
SYNE1-225ENST00000481502 SIK1P57059 783 aa10.58□□□□□ -0.72
SYNE1-225ENST00000481502 SLC39A6Q13433 755 aa10.58□□□□□ -0.72
SYNE1-225ENST00000481502 TSPYL6Q8N831 410 aa10.58□□□□□ -0.72
SYNE1-225ENST00000481502 ACSBG1Q96GR2 724 aa10.58□□□□□ -0.72
SYNE1-225ENST00000481502 BRWD3Q6RI45 1802 aa10.58□□□□□ -0.72
SYNE1-225ENST00000481502 KCPQ6ZWJ8 1503 aa10.58□□□□□ -0.72
SYNE1-225ENST00000481502 PTPRCP08575 1304 aa10.58□□□□□ -0.72
SYNE1-225ENST00000481502 SBF2Q86WG5 1849 aa10.57□□□□□ -0.72
SYNE1-225ENST00000481502 RGL2O15211 777 aa10.57□□□□□ -0.72
SYNE1-225ENST00000481502 RC3H1Q5TC82 1133 aaKnown RBP10.57□□□□□ -0.72
SYNE1-225ENST00000481502 HDGFL1Q5TGJ6 251 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms