RNA–Protein interactions for RNA: ENST00000480943.5

VPS50-215, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 801 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-215ENST00000480943 GLI2P10070 1586 aa10.2□□□□□ -0.78
VPS50-215ENST00000480943 CLK2P49760 499 aaKnown RBP10.2□□□□□ -0.78
VPS50-215ENST00000480943 PLB1Q6P1J6 1458 aa10.2□□□□□ -0.78
VPS50-215ENST00000480943 ASXL2Q76L83 1435 aa10.2□□□□□ -0.78
VPS50-215ENST00000480943 CABLES1Q8TDN4 633 aa10.2□□□□□ -0.78
VPS50-215ENST00000480943 DDRGK1Q96HY6 314 aa10.2□□□□□ -0.78
VPS50-215ENST00000480943 MAP10Q9P2G4 905 aa10.2□□□□□ -0.78
VPS50-215ENST00000480943 MAP3K4Q9Y6R4 1608 aa10.19□□□□□ -0.78
VPS50-215ENST00000480943 SCO2A0A1W2PP80 73 aa10.19□□□□□ -0.78
VPS50-215ENST00000480943 PIK3R2O00459 728 aa10.19□□□□□ -0.78
VPS50-215ENST00000480943 TUSC1Q2TAM9 212 aa10.19□□□□□ -0.78
VPS50-215ENST00000480943 FAM9AQ8IZU1 332 aaPredicted RBP10.19□□□□□ -0.78
VPS50-215ENST00000480943 INSM2Q96T92 566 aaPredicted RBP10.19□□□□□ -0.78
VPS50-215ENST00000480943 CFAP99D6REC4 459 aa10.18□□□□□ -0.78
VPS50-215ENST00000480943 OIP5O43482 229 aa10.18□□□□□ -0.78
VPS50-215ENST00000480943 DHX9Q08211 1270 aaKnown RBP10.18□□□□□ -0.78
VPS50-215ENST00000480943 NBPF14Q5TI25 921 aa10.18□□□□□ -0.78
VPS50-215ENST00000480943 FAM117AQ9C073 453 aa10.18□□□□□ -0.78
VPS50-215ENST00000480943 SEMA6BQ9H3T3 888 aa10.18□□□□□ -0.78
VPS50-215ENST00000480943 RAPGEF6Q8TEU7 1601 aa10.18□□□□□ -0.78
VPS50-215ENST00000480943 NUTM2BA6NNL0 878 aaPredicted RBP10.17□□□□□ -0.78
VPS50-215ENST00000480943 NUTM2EB1AL46 878 aaPredicted RBP10.17□□□□□ -0.78
VPS50-215ENST00000480943 QPCTQ16769 361 aa10.17□□□□□ -0.78
VPS50-215ENST00000480943 TPRNQ4KMQ1 711 aa10.17□□□□□ -0.78
VPS50-215ENST00000480943 NUTM2DQ5VT03 806 aaPredicted RBP10.17□□□□□ -0.78
VPS50-215ENST00000480943 NUTM2AQ8IVF1 878 aaPredicted RBP10.17□□□□□ -0.78
VPS50-215ENST00000480943 TRIM22Q8IYM9 498 aa10.17□□□□□ -0.78
VPS50-215ENST00000480943 TRERF1Q96PN7 1200 aa10.17□□□□□ -0.78
VPS50-215ENST00000480943 GOLGA2P5Q9HBQ8 144 aa10.17□□□□□ -0.78
VPS50-215ENST00000480943 POLR3EQ9NVU0 708 aa10.17□□□□□ -0.78
VPS50-215ENST00000480943 CFAP43Q8NDM7 1665 aa10.16□□□□□ -0.78
VPS50-215ENST00000480943 ZNF837Q96EG3 531 aaPredicted RBP10.16□□□□□ -0.78
VPS50-215ENST00000480943 EPRSP07814 1512 aaKnown RBP10.16□□□□□ -0.78
VPS50-215ENST00000480943 LILRB3O75022 631 aa10.15□□□□□ -0.78
VPS50-215ENST00000480943 RELBQ01201 579 aa10.15□□□□□ -0.78
VPS50-215ENST00000480943 CUEDC1Q9NWM3 386 aaPredicted RBP10.15□□□□□ -0.78
VPS50-215ENST00000480943 SNRPNP63162 240 aaKnown RBP10.14□□□□□ -0.79
VPS50-215ENST00000480943 NEUROD2Q15784 382 aa10.14□□□□□ -0.79
VPS50-215ENST00000480943 SH3D19Q5HYK7 790 aa10.14□□□□□ -0.79
VPS50-215ENST00000480943 TSC1Q92574 1164 aa10.14□□□□□ -0.79
VPS50-215ENST00000480943 WDR7Q9Y4E6 1490 aa10.14□□□□□ -0.79
VPS50-215ENST00000480943 H7C1W4 665 aa10.13□□□□□ -0.79
VPS50-215ENST00000480943 COL8A1P27658 744 aa10.13□□□□□ -0.79
VPS50-215ENST00000480943 LYSMD3Q7Z3D4 306 aa10.13□□□□□ -0.79
VPS50-215ENST00000480943 MX2P20592 715 aa10.12□□□□□ -0.79
VPS50-215ENST00000480943 RANGAP1P46060 587 aaPredicted RBP10.12□□□□□ -0.79
VPS50-215ENST00000480943 GRIN2CQ14957 1233 aa10.12□□□□□ -0.79
VPS50-215ENST00000480943 SKIV2LQ15477 1246 aaKnown RBP10.12□□□□□ -0.79
VPS50-215ENST00000480943 NBPF11Q86T75 865 aa10.12□□□□□ -0.79
VPS50-215ENST00000480943 AGBL1Q96MI9 1066 aa10.12□□□□□ -0.79
VPS50-215ENST00000480943 CDV3Q9UKY7 258 aaKnown RBP10.12□□□□□ -0.79
VPS50-215ENST00000480943 EFCAB5A4FU69 1503 aa10.12□□□□□ -0.79
VPS50-215ENST00000480943 FHOD3Q2V2M9 1422 aa10.11□□□□□ -0.79
VPS50-215ENST00000480943 MAGEB6P1A0A0J9YX57 407 aa10.11□□□□□ -0.79
VPS50-215ENST00000480943 C1QTNF9BB2RNN3 333 aa10.11□□□□□ -0.79
VPS50-215ENST00000480943 GPR25O00155 361 aa10.11□□□□□ -0.79
VPS50-215ENST00000480943 ITGB7P26010 798 aa10.11□□□□□ -0.79
VPS50-215ENST00000480943 HELBQ8NG08 1087 aaPredicted RBP10.11□□□□□ -0.79
VPS50-215ENST00000480943 RRAGCQ9HB90 399 aa10.11□□□□□ -0.79
VPS50-215ENST00000480943 ATP1B4Q9UN42 357 aaPredicted RBP10.11□□□□□ -0.79
VPS50-215ENST00000480943 MAP2K3P46734 347 aa10.1□□□□□ -0.79
VPS50-215ENST00000480943 RTL5Q5HYW3 569 aaPredicted RBP10.1□□□□□ -0.79
VPS50-215ENST00000480943 ZFP64Q9NPA5 681 aa10.1□□□□□ -0.79
VPS50-215ENST00000480943 TEX14Q8IWB6 1497 aa10.1□□□□□ -0.79
VPS50-215ENST00000480943 ARID3CA6NKF2 412 aa10.09□□□□□ -0.79
VPS50-215ENST00000480943 KRTAP19-1Q8IUB9 90 aa10.09□□□□□ -0.79
VPS50-215ENST00000480943 OXCT2Q9BYC2 517 aaPredicted RBP10.09□□□□□ -0.79
VPS50-215ENST00000480943 SH3BP5LQ7L8J4 393 aa10.08□□□□□ -0.8
VPS50-215ENST00000480943 ATP10BO94823 1461 aa10.08□□□□□ -0.8
VPS50-215ENST00000480943 ABCA9Q8IUA7 1624 aa10.07□□□□□ -0.8
VPS50-215ENST00000480943 PER1O15534 1290 aaPredicted RBP10.07□□□□□ -0.8
VPS50-215ENST00000480943 BRPF1P55201 1214 aaPredicted RBP10.07□□□□□ -0.8
VPS50-215ENST00000480943 ZNF395Q9H8N7 513 aaPredicted RBP10.07□□□□□ -0.8
VPS50-215ENST00000480943 NUP153P49790 1475 aaKnown RBP10.06□□□□□ -0.8
VPS50-215ENST00000480943 RIPOR1Q6ZS17 1223 aa10.06□□□□□ -0.8
VPS50-215ENST00000480943 CD163Q86VB7 1156 aa10.06□□□□□ -0.8
VPS50-215ENST00000480943 PROCA1Q8NCQ7 364 aaPredicted RBP10.06□□□□□ -0.8
VPS50-215ENST00000480943 GPKOWQ92917 476 aaPredicted RBP eCLIP10.06□□□□□ -0.8
VPS50-215ENST00000480943 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.06□□□□□ -0.8
VPS50-215ENST00000480943 LRRIQ1Q96JM4 1722 aa10.06□□□□□ -0.8
VPS50-215ENST00000480943 ARTNQ5T4W7 220 aa10.05□□□□□ -0.8
VPS50-215ENST00000480943 FOXD4L5Q5VV16 416 aaPredicted RBP10.05□□□□□ -0.8
VPS50-215ENST00000480943 MAGI3Q5TCQ9 1506 aa10.04□□□□□ -0.8
VPS50-215ENST00000480943 UBTFP17480 764 aaKnown RBP10.04□□□□□ -0.8
VPS50-215ENST00000480943 GTPBP3Q969Y2 492 aaKnown RBP10.04□□□□□ -0.8
VPS50-215ENST00000480943 CARD14Q9BXL6 1004 aa10.04□□□□□ -0.8
VPS50-215ENST00000480943 NOP53Q9NZM5 478 aaKnown RBP10.04□□□□□ -0.8
VPS50-215ENST00000480943 CD109Q6YHK3 1445 aa10.04□□□□□ -0.8
VPS50-215ENST00000480943 HECW1Q76N89 1606 aa10.04□□□□□ -0.8
VPS50-215ENST00000480943 DOC2BQ14184 412 aa10.03□□□□□ -0.8
VPS50-215ENST00000480943 DBN1Q16643 649 aa10.03□□□□□ -0.8
VPS50-215ENST00000480943 ERFEQ4G0M1 354 aa10.03□□□□□ -0.8
VPS50-215ENST00000480943 KCTD15Q96SI1 283 aaPredicted RBP10.03□□□□□ -0.8
VPS50-215ENST00000480943 GDF2Q9UK05 429 aaPredicted RBP10.03□□□□□ -0.8
VPS50-215ENST00000480943 COL17A1Q9UMD9 1497 aaPredicted RBP10.03□□□□□ -0.8
VPS50-215ENST00000480943 GNB5O14775 395 aa10.02□□□□□ -0.81
VPS50-215ENST00000480943 IL27Q8NEV9 243 aa10.02□□□□□ -0.81
VPS50-215ENST00000480943 SLC10A4Q96EP9 437 aa10.02□□□□□ -0.81
VPS50-215ENST00000480943 ARHGAP35Q9NRY4 1499 aa10.02□□□□□ -0.81
VPS50-215ENST00000480943 CDK13Q14004 1512 aaKnown RBP10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms