RNA–Protein interactions for RNA: ENST00000479625.1

GPNMB-211, Transcript of glycoprotein nmb, humanhuman

TSL 2

Gene GPNMB, Length 788 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-211ENST00000479625 PHF14O94880 888 aa13.8□□□□□ -0.2
GPNMB-211ENST00000479625 RTL1A6NKG5 1358 aa13.8□□□□□ -0.2
GPNMB-211ENST00000479625 PCNTO95613 3336 aa13.79□□□□□ -0.2
GPNMB-211ENST00000479625 AMPHP49418 695 aa13.79□□□□□ -0.2
GPNMB-211ENST00000479625 NEUROD1Q13562 356 aa13.79□□□□□ -0.2
GPNMB-211ENST00000479625 NBPF6Q5VWK0 638 aa13.79□□□□□ -0.2
GPNMB-211ENST00000479625 NBPF4Q96M43 638 aa13.79□□□□□ -0.2
GPNMB-211ENST00000479625 TERF2IPQ9NYB0 399 aa13.79□□□□□ -0.2
GPNMB-211ENST00000479625 COG3Q96JB2 828 aa13.78□□□□□ -0.2
GPNMB-211ENST00000479625 PXDNLA1KZ92 1463 aa13.78□□□□□ -0.2
GPNMB-211ENST00000479625 C4AP0C0L4 1744 aa13.78□□□□□ -0.2
GPNMB-211ENST00000479625 RRS1Q15050 365 aaKnown RBP13.77□□□□□ -0.21
GPNMB-211ENST00000479625 MPRIPQ6WCQ1 1025 aa13.77□□□□□ -0.21
GPNMB-211ENST00000479625 SMG6Q86US8 1419 aaKnown RBP13.77□□□□□ -0.21
GPNMB-211ENST00000479625 FLAD1Q8NFF5 587 aa13.77□□□□□ -0.21
GPNMB-211ENST00000479625 AK7Q96M32 723 aa13.77□□□□□ -0.21
GPNMB-211ENST00000479625 ARFGEF1Q9Y6D6 1849 aa13.77□□□□□ -0.21
GPNMB-211ENST00000479625 COL5A3P25940 1745 aaPredicted RBP13.76□□□□□ -0.21
GPNMB-211ENST00000479625 ANKRD26Q9UPS8 1709 aa13.76□□□□□ -0.21
GPNMB-211ENST00000479625 PCDH11XQ9BZA7 1347 aa13.76□□□□□ -0.21
GPNMB-211ENST00000479625 PCDH11YQ9BZA8 1340 aa13.76□□□□□ -0.21
GPNMB-211ENST00000479625 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.76□□□□□ -0.21
GPNMB-211ENST00000479625 GABBR2O75899 941 aa13.76□□□□□ -0.21
GPNMB-211ENST00000479625 APLP1P51693 650 aa13.76□□□□□ -0.21
GPNMB-211ENST00000479625 CARD11Q9BXL7 1154 aa13.76□□□□□ -0.21
GPNMB-211ENST00000479625 DNAJC5GQ8N7S2 189 aa13.75□□□□□ -0.21
GPNMB-211ENST00000479625 RAPGEF4Q8WZA2 1011 aa13.75□□□□□ -0.21
GPNMB-211ENST00000479625 NSD3Q9BZ95 1437 aa13.74□□□□□ -0.21
GPNMB-211ENST00000479625 CGNL1Q0VF96 1302 aa13.74□□□□□ -0.21
GPNMB-211ENST00000479625 CYP27B1O15528 508 aa13.74□□□□□ -0.21
GPNMB-211ENST00000479625 TATP17735 454 aaPredicted RBP13.74□□□□□ -0.21
GPNMB-211ENST00000479625 TNRC6CQ9HCJ0 1690 aaKnown RBP13.73□□□□□ -0.21
GPNMB-211ENST00000479625 MNX1P50219 401 aaPredicted RBP13.73□□□□□ -0.21
GPNMB-211ENST00000479625 HTRA3P83110 453 aa13.73□□□□□ -0.21
GPNMB-211ENST00000479625 LINC00116Q8NCU8 138 aa13.73□□□□□ -0.21
GPNMB-211ENST00000479625 NMRK2Q9NPI5 230 aa13.73□□□□□ -0.21
GPNMB-211ENST00000479625 C10orf71Q711Q0 1435 aa13.72□□□□□ -0.21
GPNMB-211ENST00000479625 TOMM70O94826 608 aa13.71□□□□□ -0.21
GPNMB-211ENST00000479625 SSFA2P28290 1259 aa13.71□□□□□ -0.21
GPNMB-211ENST00000479625 GGNBP2Q9H3C7 697 aa13.71□□□□□ -0.21
GPNMB-211ENST00000479625 SBF1O95248 1867 aa13.7□□□□□ -0.22
GPNMB-211ENST00000479625 ZNF831Q5JPB2 1677 aa13.7□□□□□ -0.22
GPNMB-211ENST00000479625 GNPATO15228 680 aa13.7□□□□□ -0.22
GPNMB-211ENST00000479625 HSP90AB2PQ58FF8 381 aa13.7□□□□□ -0.22
GPNMB-211ENST00000479625 COL13A1Q5TAT6 717 aaPredicted RBP13.7□□□□□ -0.22
GPNMB-211ENST00000479625 PIGBQ92521 554 aa13.7□□□□□ -0.22
GPNMB-211ENST00000479625 BCS1LQ9Y276 419 aa13.7□□□□□ -0.22
GPNMB-211ENST00000479625 INSRP06213 1382 aa13.7□□□□□ -0.22
GPNMB-211ENST00000479625 FLT4P35916 1363 aa13.7□□□□□ -0.22
GPNMB-211ENST00000479625 KCPQ6ZWJ8 1503 aa13.69□□□□□ -0.22
GPNMB-211ENST00000479625 MMP10P09238 476 aa13.69□□□□□ -0.22
GPNMB-211ENST00000479625 ITPK1Q13572 414 aa13.69□□□□□ -0.22
GPNMB-211ENST00000479625 SMARCC1Q92922 1105 aaPredicted RBP13.69□□□□□ -0.22
GPNMB-211ENST00000479625 NCAPD2Q15021 1401 aa13.68□□□□□ -0.22
GPNMB-211ENST00000479625 LOC102724428A0A0B4J2F2 783 aa13.68□□□□□ -0.22
GPNMB-211ENST00000479625 SIK1P57059 783 aa13.68□□□□□ -0.22
GPNMB-211ENST00000479625 TESK2Q96S53 571 aa13.68□□□□□ -0.22
GPNMB-211ENST00000479625 TIAM2Q8IVF5 1701 aa13.67□□□□□ -0.22
GPNMB-211ENST00000479625 MYH14Q7Z406 1995 aaKnown RBP13.67□□□□□ -0.22
GPNMB-211ENST00000479625 A0A0G2JLW4 131 aa13.67□□□□□ -0.22
GPNMB-211ENST00000479625 MIER1Q8N108 512 aa13.67□□□□□ -0.22
GPNMB-211ENST00000479625 PUS7Q96PZ0 661 aaKnown RBP13.67□□□□□ -0.22
GPNMB-211ENST00000479625 FYB1O15117 783 aa13.66□□□□□ -0.22
GPNMB-211ENST00000479625 ARHGAP27Q6ZUM4 889 aa13.66□□□□□ -0.22
GPNMB-211ENST00000479625 ASAP1Q9ULH1 1129 aa13.66□□□□□ -0.22
GPNMB-211ENST00000479625 KDRP35968 1356 aa13.66□□□□□ -0.22
GPNMB-211ENST00000479625 TJP1Q07157 1748 aa13.65□□□□□ -0.22
GPNMB-211ENST00000479625 HMGB2P26583 209 aaKnown RBP13.65□□□□□ -0.22
GPNMB-211ENST00000479625 ZNF579Q8NAF0 562 aaKnown RBP13.65□□□□□ -0.22
GPNMB-211ENST00000479625 KLRG1Q96E93 195 aa13.65□□□□□ -0.22
GPNMB-211ENST00000479625 CCDC88AQ3V6T2 1871 aa13.65□□□□□ -0.22
GPNMB-211ENST00000479625 PLEKHG2Q9H7P9 1386 aa13.64□□□□□ -0.23
GPNMB-211ENST00000479625 ST20-MTHFSA0A0A6YYL1 179 aa13.64□□□□□ -0.23
GPNMB-211ENST00000479625 DPEP1P16444 411 aa13.64□□□□□ -0.23
GPNMB-211ENST00000479625 ATP6V1AP38606 617 aa13.64□□□□□ -0.23
GPNMB-211ENST00000479625 RBM46Q8TBY0 533 aaKnown RBP13.64□□□□□ -0.23
GPNMB-211ENST00000479625 TMOD3Q9NYL9 352 aa13.64□□□□□ -0.23
GPNMB-211ENST00000479625 EMILIN1Q9Y6C2 1016 aa13.64□□□□□ -0.23
GPNMB-211ENST00000479625 KIF24Q5T7B8 1368 aa13.63□□□□□ -0.23
GPNMB-211ENST00000479625 FCHSD2O94868 740 aa13.63□□□□□ -0.23
GPNMB-211ENST00000479625 TGFB2P61812 414 aa13.63□□□□□ -0.23
GPNMB-211ENST00000479625 NKX1-1Q15270 411 aaPredicted RBP13.63□□□□□ -0.23
GPNMB-211ENST00000479625 PLCD3Q8N3E9 789 aa13.63□□□□□ -0.23
GPNMB-211ENST00000479625 JMYQ8N9B5 988 aa13.63□□□□□ -0.23
GPNMB-211ENST00000479625 DLEC1Q9Y238 1755 aa13.63□□□□□ -0.23
GPNMB-211ENST00000479625 ADAMTS7Q9UKP4 1686 aa13.63□□□□□ -0.23
GPNMB-211ENST00000479625 C9orf131Q5VYM1 1079 aa13.62□□□□□ -0.23
GPNMB-211ENST00000479625 C16orf71Q8IYS4 520 aaPredicted RBP13.62□□□□□ -0.23
GPNMB-211ENST00000479625 AFDNP55196 1824 aaKnown RBP13.62□□□□□ -0.23
GPNMB-211ENST00000479625 TNS4Q8IZW8 715 aa13.61□□□□□ -0.23
GPNMB-211ENST00000479625 SLC4A9Q96Q91 983 aa13.61□□□□□ -0.23
GPNMB-211ENST00000479625 ATG3Q9NT62 314 aa13.61□□□□□ -0.23
GPNMB-211ENST00000479625 TONSLQ96HA7 1378 aa13.6□□□□□ -0.23
GPNMB-211ENST00000479625 VIRMAQ69YN4 1812 aaKnown RBP13.6□□□□□ -0.23
GPNMB-211ENST00000479625 KCNA3P22001 575 aa13.6□□□□□ -0.23
GPNMB-211ENST00000479625 CCDC87Q9NVE4 849 aa13.6□□□□□ -0.23
GPNMB-211ENST00000479625 SPG7Q9UQ90 795 aa13.6□□□□□ -0.23
GPNMB-211ENST00000479625 RTCBQ9Y3I0 505 aaKnown RBP13.6□□□□□ -0.23
GPNMB-211ENST00000479625 GYS1P13807 737 aa13.59□□□□□ -0.23
GPNMB-211ENST00000479625 PHKG2P15735 406 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms