RNA–Protein interactions for RNA: ENST00000477554.5

PTPN7-209, Transcript of protein tyrosine phosphatase, non-receptor type 7, humanhuman

APPRIS ALT2 TSL 2

Gene PTPN7, Length 1,432 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN7-209ENST00000477554 AKAP4Q5JQC9 854 aa23.72■■□□□ 1.39
PTPN7-209ENST00000477554 TFCP2L1Q9NZI6 479 aa23.72■■□□□ 1.39
PTPN7-209ENST00000477554 ADAMTS7Q9UKP4 1686 aa23.71■■□□□ 1.39
PTPN7-209ENST00000477554 HSP90AB1P08238 724 aaKnown RBP23.71■■□□□ 1.39
PTPN7-209ENST00000477554 CABP4P57796 275 aa23.71■■□□□ 1.39
PTPN7-209ENST00000477554 SMARCC1Q92922 1105 aaPredicted RBP23.71■■□□□ 1.39
PTPN7-209ENST00000477554 PRKAR2BP31323 418 aa23.7■■□□□ 1.38
PTPN7-209ENST00000477554 CFAP53Q96M91 514 aa23.7■■□□□ 1.38
PTPN7-209ENST00000477554 RNMTO43148 476 aaKnown RBP23.69■■□□□ 1.38
PTPN7-209ENST00000477554 COL23A1Q86Y22 540 aaPredicted RBP23.69■■□□□ 1.38
PTPN7-209ENST00000477554 SGIP1Q9BQI5 828 aa23.69■■□□□ 1.38
PTPN7-209ENST00000477554 UBR3Q6ZT12 1888 aa23.69■■□□□ 1.38
PTPN7-209ENST00000477554 U2AF1L5P0DN76 240 aaPredicted RBP23.68■■□□□ 1.38
PTPN7-209ENST00000477554 U2AF1Q01081 240 aaKnown RBP eCLIP23.68■■□□□ 1.38
PTPN7-209ENST00000477554 MRC1P22897 1456 aa23.67■■□□□ 1.38
PTPN7-209ENST00000477554 ATP6V1AP38606 617 aa23.67■■□□□ 1.38
PTPN7-209ENST00000477554 RBM42Q9BTD8 480 aaKnown RBP23.67■■□□□ 1.38
PTPN7-209ENST00000477554 SLC39A6Q13433 755 aa23.66■■□□□ 1.38
PTPN7-209ENST00000477554 MTFR1LQ9H019 292 aa23.66■■□□□ 1.38
PTPN7-209ENST00000477554 COL5A3P25940 1745 aaPredicted RBP23.65■■□□□ 1.38
PTPN7-209ENST00000477554 PTCD1O75127 700 aaKnown RBP23.65■■□□□ 1.38
PTPN7-209ENST00000477554 IL17REQ8NFR9 667 aa23.65■■□□□ 1.38
PTPN7-209ENST00000477554 SLC52A2Q9HAB3 445 aa23.65■■□□□ 1.38
PTPN7-209ENST00000477554 TJP1Q07157 1748 aa23.64■■□□□ 1.37
PTPN7-209ENST00000477554 COL24A1Q17RW2 1714 aa23.64■■□□□ 1.37
PTPN7-209ENST00000477554 MYH14Q7Z406 1995 aaKnown RBP23.63■■□□□ 1.37
PTPN7-209ENST00000477554 PHF14O94880 888 aa23.63■■□□□ 1.37
PTPN7-209ENST00000477554 MSL1Q68DK7 614 aa23.63■■□□□ 1.37
PTPN7-209ENST00000477554 MAP3K5Q99683 1374 aa23.62■■□□□ 1.37
PTPN7-209ENST00000477554 SIPA1L3O60292 1781 aaPredicted RBP23.61■■□□□ 1.37
PTPN7-209ENST00000477554 MSH5O43196 834 aa23.61■■□□□ 1.37
PTPN7-209ENST00000477554 PPP1R1BQ9UD71 204 aaPredicted RBP23.61■■□□□ 1.37
PTPN7-209ENST00000477554 NUDCQ9Y266 331 aa23.61■■□□□ 1.37
PTPN7-209ENST00000477554 ZNF831Q5JPB2 1677 aa23.61■■□□□ 1.37
PTPN7-209ENST00000477554 AK7Q96M32 723 aa23.6■■□□□ 1.37
PTPN7-209ENST00000477554 KCPQ6ZWJ8 1503 aa23.6■■□□□ 1.37
PTPN7-209ENST00000477554 RALBP1Q15311 655 aa23.59■■□□□ 1.37
PTPN7-209ENST00000477554 GAS2L2Q8NHY3 880 aa23.59■■□□□ 1.37
PTPN7-209ENST00000477554 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP23.58■■□□□ 1.36
PTPN7-209ENST00000477554 GNAT3A8MTJ3 354 aa23.58■■□□□ 1.36
PTPN7-209ENST00000477554 GNPATO15228 680 aa23.58■■□□□ 1.36
PTPN7-209ENST00000477554 DCTN1Q14203 1278 aa23.58■■□□□ 1.36
PTPN7-209ENST00000477554 FCHSD2O94868 740 aa23.57■■□□□ 1.36
PTPN7-209ENST00000477554 PLEKHF1Q96S99 279 aa23.57■■□□□ 1.36
PTPN7-209ENST00000477554 UTRNP46939 3433 aa23.57■■□□□ 1.36
PTPN7-209ENST00000477554 DLG5Q8TDM6 1919 aa23.56■■□□□ 1.36
PTPN7-209ENST00000477554 UBR2Q8IWV8 1755 aa23.56■■□□□ 1.36
PTPN7-209ENST00000477554 MCM10Q7L590 875 aa23.56■■□□□ 1.36
PTPN7-209ENST00000477554 FHDC1Q9C0D6 1143 aaPredicted RBP23.56■■□□□ 1.36
PTPN7-209ENST00000477554 KCNQ3O43525 872 aa23.55■■□□□ 1.36
PTPN7-209ENST00000477554 DNAJC10Q8IXB1 793 aa23.55■■□□□ 1.36
PTPN7-209ENST00000477554 MYBBP1AQ9BQG0 1328 aaKnown RBP23.55■■□□□ 1.36
PTPN7-209ENST00000477554 CEMIPQ8WUJ3 1361 aa23.55■■□□□ 1.36
PTPN7-209ENST00000477554 ARXQ96QS3 562 aa23.54■■□□□ 1.36
PTPN7-209ENST00000477554 PRKRIP1Q9H875 184 aaPredicted RBP23.54■■□□□ 1.36
PTPN7-209ENST00000477554 CICQ96RK0 1608 aaPredicted RBP23.54■■□□□ 1.36
PTPN7-209ENST00000477554 GOLGB1Q14789 3259 aaKnown RBP23.54■■□□□ 1.36
PTPN7-209ENST00000477554 SLC16A10Q8TF71 515 aa23.53■■□□□ 1.36
PTPN7-209ENST00000477554 C4AP0C0L4 1744 aa23.52■■□□□ 1.36
PTPN7-209ENST00000477554 SSFA2P28290 1259 aa23.5■■□□□ 1.35
PTPN7-209ENST00000477554 CRKLP46109 303 aaKnown RBP23.5■■□□□ 1.35
PTPN7-209ENST00000477554 SYT17Q9BSW7 474 aa23.5■■□□□ 1.35
PTPN7-209ENST00000477554 CNTNAP4Q9C0A0 1308 aa23.5■■□□□ 1.35
PTPN7-209ENST00000477554 INTS5Q6P9B9 1019 aaKnown RBP23.5■■□□□ 1.35
PTPN7-209ENST00000477554 ZNF496Q96IT1 587 aaPredicted RBP23.49■■□□□ 1.35
PTPN7-209ENST00000477554 THUMPD2Q9BTF0 503 aaKnown RBP23.49■■□□□ 1.35
PTPN7-209ENST00000477554 TEFQ10587 303 aa23.48■■□□□ 1.35
PTPN7-209ENST00000477554 KLHL34Q8N239 644 aa23.48■■□□□ 1.35
PTPN7-209ENST00000477554 ARHGEF1Q92888 912 aaKnown RBP23.48■■□□□ 1.35
PTPN7-209ENST00000477554 CCDC184Q52MB2 194 aa23.47■■□□□ 1.35
PTPN7-209ENST00000477554 RC3H1Q5TC82 1133 aaKnown RBP23.47■■□□□ 1.35
PTPN7-209ENST00000477554 CCDC146Q8IYE0 955 aa23.47■■□□□ 1.35
PTPN7-209ENST00000477554 NLGN2Q8NFZ4 835 aa23.47■■□□□ 1.35
PTPN7-209ENST00000477554 CYP19A1P11511 503 aaPredicted RBP23.46■■□□□ 1.35
PTPN7-209ENST00000477554 ZNF790Q6PG37 636 aa23.46■■□□□ 1.35
PTPN7-209ENST00000477554 MIS18AQ9NYP9 233 aa23.46■■□□□ 1.35
PTPN7-209ENST00000477554 RTCBQ9Y3I0 505 aaKnown RBP23.46■■□□□ 1.35
PTPN7-209ENST00000477554 PRAMEF22A3QJZ6 481 aa23.45■■□□□ 1.34
PTPN7-209ENST00000477554 RPS6KA4O75676 772 aa23.45■■□□□ 1.34
PTPN7-209ENST00000477554 POLD1P28340 1107 aa23.45■■□□□ 1.34
PTPN7-209ENST00000477554 FLAD1Q8NFF5 587 aa23.45■■□□□ 1.34
PTPN7-209ENST00000477554 SRP68Q9UHB9 627 aaKnown RBP23.45■■□□□ 1.34
PTPN7-209ENST00000477554 DIEXFQ68CQ4 756 aaKnown RBP23.44■■□□□ 1.34
PTPN7-209ENST00000477554 BTBD11A6QL63 1104 aa23.43■■□□□ 1.34
PTPN7-209ENST00000477554 NFE2L2Q16236 605 aa23.43■■□□□ 1.34
PTPN7-209ENST00000477554 TRAPPC3LQ5T215 181 aa23.43■■□□□ 1.34
PTPN7-209ENST00000477554 ZBTB1Q9Y2K1 713 aa23.43■■□□□ 1.34
PTPN7-209ENST00000477554 TTC5Q8N0Z6 440 aa23.42■■□□□ 1.34
PTPN7-209ENST00000477554 RTF1Q92541 710 aaKnown RBP23.42■■□□□ 1.34
PTPN7-209ENST00000477554 CCDC87Q9NVE4 849 aa23.42■■□□□ 1.34
PTPN7-209ENST00000477554 RRP7AQ9Y3A4 280 aaKnown RBP23.42■■□□□ 1.34
PTPN7-209ENST00000477554 HEG1Q9ULI3 1381 aa23.41■■□□□ 1.34
PTPN7-209ENST00000477554 ADAMTS8Q9UP79 889 aa23.41■■□□□ 1.34
PTPN7-209ENST00000477554 SOS1Q07889 1333 aaPredicted RBP23.4■■□□□ 1.34
PTPN7-209ENST00000477554 GYS1P13807 737 aa23.4■■□□□ 1.34
PTPN7-209ENST00000477554 PIP4K2AP48426 406 aaPredicted RBP23.39■■□□□ 1.33
PTPN7-209ENST00000477554 VSIG10Q8N0Z9 540 aa23.38■■□□□ 1.33
PTPN7-209ENST00000477554 MAPK8IP3Q9UPT6 1336 aa23.38■■□□□ 1.33
PTPN7-209ENST00000477554 HTATSF1O43719 755 aaKnown RBP23.37■■□□□ 1.33
PTPN7-209ENST00000477554 MMP10P09238 476 aa23.37■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 88.8 ms