RNA–Protein interactions for RNA: ENST00000476930.1

PTPRN-213, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 3

Gene PTPRN, Length 582 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-213ENST00000476930 SMIM5Q71RC9 77 aa15.13■□□□□ 0.01
PTPRN-213ENST00000476930 LINC00116Q8NCU8 138 aa15.13■□□□□ 0.01
PTPRN-213ENST00000476930 DCAF5Q96JK2 942 aa15.13■□□□□ 0.01
PTPRN-213ENST00000476930 COL3A1P02461 1466 aaPredicted RBP15.13■□□□□ 0.01
PTPRN-213ENST00000476930 CHD4Q14839 1912 aa15.12■□□□□ 0.01
PTPRN-213ENST00000476930 DIAPH1O60610 1272 aaKnown RBP15.12■□□□□ 0.01
PTPRN-213ENST00000476930 ITPK1Q13572 414 aa15.12■□□□□ 0.01
PTPRN-213ENST00000476930 ZNF831Q5JPB2 1677 aa15.12■□□□□ 0.01
PTPRN-213ENST00000476930 POLD1P28340 1107 aa15.11■□□□□ 0.01
PTPRN-213ENST00000476930 ATP6V1AP38606 617 aa15.11■□□□□ 0.01
PTPRN-213ENST00000476930 C1orf141Q5JVX7 400 aa15.11■□□□□ 0.01
PTPRN-213ENST00000476930 MSL1Q68DK7 614 aa15.11■□□□□ 0.01
PTPRN-213ENST00000476930 AK7Q96M32 723 aa15.11■□□□□ 0.01
PTPRN-213ENST00000476930 CABP4P57796 275 aa15.1■□□□□ 0.01
PTPRN-213ENST00000476930 SLC4A9Q96Q91 983 aa15.1■□□□□ 0.01
PTPRN-213ENST00000476930 PHF14O94880 888 aa15.09■□□□□ 0.01
PTPRN-213ENST00000476930 KLHL34Q8N239 644 aa15.09■□□□□ 0.01
PTPRN-213ENST00000476930 NFATC2IPQ8NCF5 419 aa15.09■□□□□ 0.01
PTPRN-213ENST00000476930 MAP3K5Q99683 1374 aa15.09■□□□□ 0.01
PTPRN-213ENST00000476930 DCAF8L1A6NGE4 600 aa15.08■□□□□ 0
PTPRN-213ENST00000476930 HMGB2P26583 209 aaKnown RBP15.08■□□□□ 0
PTPRN-213ENST00000476930 FLAD1Q8NFF5 587 aa15.08■□□□□ 0
PTPRN-213ENST00000476930 RBM42Q9BTD8 480 aaKnown RBP15.08■□□□□ 0
PTPRN-213ENST00000476930 ADAMTS7Q9UKP4 1686 aa15.07■□□□□ 0
PTPRN-213ENST00000476930 TJP1Q07157 1748 aa15.07■□□□□ 0
PTPRN-213ENST00000476930 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.07■□□□□ 0
PTPRN-213ENST00000476930 MTHFSDQ2M296 383 aaKnown RBP15.07■□□□□ 0
PTPRN-213ENST00000476930 AKAP4Q5JQC9 854 aa15.07■□□□□ 0
PTPRN-213ENST00000476930 LGR6Q9HBX8 967 aa15.07■□□□□ 0
PTPRN-213ENST00000476930 U2SURPO15042 1029 aaKnown RBP15.06■□□□□ 0
PTPRN-213ENST00000476930 GNPATO15228 680 aa15.06■□□□□ 0
PTPRN-213ENST00000476930 PTCD1O75127 700 aaKnown RBP15.05■□□□□ -0
PTPRN-213ENST00000476930 SSFA2P28290 1259 aa15.05■□□□□ -0
PTPRN-213ENST00000476930 NLGN2Q8NFZ4 835 aa15.05■□□□□ -0
PTPRN-213ENST00000476930 C4AP0C0L4 1744 aa15.05■□□□□ -0
PTPRN-213ENST00000476930 RNMTO43148 476 aaKnown RBP15.04■□□□□ -0
PTPRN-213ENST00000476930 YY1P25490 414 aa15.04■□□□□ -0
PTPRN-213ENST00000476930 PPP2R1AP30153 589 aa15.04■□□□□ -0
PTPRN-213ENST00000476930 SIPA1L3O60292 1781 aaPredicted RBP15.03■□□□□ -0
PTPRN-213ENST00000476930 CICQ96RK0 1608 aaPredicted RBP15.03■□□□□ -0
PTPRN-213ENST00000476930 MRC1P22897 1456 aa15.03■□□□□ -0
PTPRN-213ENST00000476930 SLC52A2Q9HAB3 445 aa15.03■□□□□ -0
PTPRN-213ENST00000476930 UBR2Q8IWV8 1755 aa15.02□□□□□ -0.01
PTPRN-213ENST00000476930 ADRA2BP18089 450 aa15.01□□□□□ -0.01
PTPRN-213ENST00000476930 SLC39A6Q13433 755 aa15.01□□□□□ -0.01
PTPRN-213ENST00000476930 RC3H1Q5TC82 1133 aaKnown RBP15.01□□□□□ -0.01
PTPRN-213ENST00000476930 CNTNAP4Q9C0A0 1308 aa15□□□□□ -0.01
PTPRN-213ENST00000476930 TRAPPC3LQ5T215 181 aa15□□□□□ -0.01
PTPRN-213ENST00000476930 CFAP53Q96M91 514 aa15□□□□□ -0.01
PTPRN-213ENST00000476930 RTCBQ9Y3I0 505 aaKnown RBP15□□□□□ -0.01
PTPRN-213ENST00000476930 DLG5Q8TDM6 1919 aa15□□□□□ -0.01
PTPRN-213ENST00000476930 KCPQ6ZWJ8 1503 aa14.99□□□□□ -0.01
PTPRN-213ENST00000476930 RPS6KA4O75676 772 aa14.99□□□□□ -0.01
PTPRN-213ENST00000476930 GPR162Q16538 588 aa14.99□□□□□ -0.01
PTPRN-213ENST00000476930 PELP1Q8IZL8 1130 aaKnown RBP14.99□□□□□ -0.01
PTPRN-213ENST00000476930 ARHGEF1Q92888 912 aaKnown RBP14.99□□□□□ -0.01
PTPRN-213ENST00000476930 PHACTR3Q96KR7 559 aa14.99□□□□□ -0.01
PTPRN-213ENST00000476930 RSPH6AQ9H0K4 717 aa14.99□□□□□ -0.01
PTPRN-213ENST00000476930 KIF13BQ9NQT8 1826 aa14.99□□□□□ -0.01
PTPRN-213ENST00000476930 PRKAR2BP31323 418 aa14.98□□□□□ -0.01
PTPRN-213ENST00000476930 CRKLP46109 303 aaKnown RBP14.98□□□□□ -0.01
PTPRN-213ENST00000476930 IL17REQ8NFR9 667 aa14.98□□□□□ -0.01
PTPRN-213ENST00000476930 N4BP2Q86UW6 1770 aaPredicted RBP14.98□□□□□ -0.01
PTPRN-213ENST00000476930 GNAT3A8MTJ3 354 aa14.97□□□□□ -0.01
PTPRN-213ENST00000476930 DNAJC10Q8IXB1 793 aa14.97□□□□□ -0.01
PTPRN-213ENST00000476930 GAS2L2Q8NHY3 880 aa14.97□□□□□ -0.01
PTPRN-213ENST00000476930 CD2APQ9Y5K6 639 aa14.97□□□□□ -0.01
PTPRN-213ENST00000476930 U2AF1L5P0DN76 240 aaPredicted RBP14.96□□□□□ -0.01
PTPRN-213ENST00000476930 YBX3P16989 372 aaKnown RBP eCLIP14.96□□□□□ -0.01
PTPRN-213ENST00000476930 U2AF1Q01081 240 aaKnown RBP eCLIP14.96□□□□□ -0.01
PTPRN-213ENST00000476930 INTS5Q6P9B9 1019 aaKnown RBP14.96□□□□□ -0.01
PTPRN-213ENST00000476930 NUDCQ9Y266 331 aa14.96□□□□□ -0.01
PTPRN-213ENST00000476930 KIAA1551Q9HCM1 1747 aa14.95□□□□□ -0.02
PTPRN-213ENST00000476930 MMP10P09238 476 aa14.95□□□□□ -0.02
PTPRN-213ENST00000476930 GYS1P13807 737 aa14.95□□□□□ -0.02
PTPRN-213ENST00000476930 RFC4P35249 363 aa14.95□□□□□ -0.02
PTPRN-213ENST00000476930 SRP68Q9UHB9 627 aaKnown RBP14.94□□□□□ -0.02
PTPRN-213ENST00000476930 CYP19A1P11511 503 aaPredicted RBP14.93□□□□□ -0.02
PTPRN-213ENST00000476930 TEFQ10587 303 aa14.93□□□□□ -0.02
PTPRN-213ENST00000476930 NLGN1Q8N2Q7 840 aa14.93□□□□□ -0.02
PTPRN-213ENST00000476930 CCDC87Q9NVE4 849 aa14.93□□□□□ -0.02
PTPRN-213ENST00000476930 AFDNP55196 1824 aaKnown RBP14.92□□□□□ -0.02
PTPRN-213ENST00000476930 FCHSD2O94868 740 aa14.92□□□□□ -0.02
PTPRN-213ENST00000476930 WWC3Q9ULE0 1092 aa14.92□□□□□ -0.02
PTPRN-213ENST00000476930 CEMIPQ8WUJ3 1361 aa14.92□□□□□ -0.02
PTPRN-213ENST00000476930 BRCA1P38398 1863 aaKnown RBP14.92□□□□□ -0.02
PTPRN-213ENST00000476930 DDX10Q13206 875 aaKnown RBP14.91□□□□□ -0.02
PTPRN-213ENST00000476930 TTC5Q8N0Z6 440 aa14.91□□□□□ -0.02
PTPRN-213ENST00000476930 VSIG10Q8N0Z9 540 aa14.91□□□□□ -0.02
PTPRN-213ENST00000476930 SOS1Q07889 1333 aaPredicted RBP14.91□□□□□ -0.02
PTPRN-213ENST00000476930 USP42Q9H9J4 1324 aaKnown RBP14.91□□□□□ -0.02
PTPRN-213ENST00000476930 KCNQ3O43525 872 aa14.9□□□□□ -0.02
PTPRN-213ENST00000476930 FKBP8Q14318 412 aa14.9□□□□□ -0.02
PTPRN-213ENST00000476930 ZNF790Q6PG37 636 aa14.9□□□□□ -0.02
PTPRN-213ENST00000476930 ZNF496Q96IT1 587 aaPredicted RBP14.9□□□□□ -0.02
PTPRN-213ENST00000476930 ZBTB1Q9Y2K1 713 aa14.9□□□□□ -0.02
PTPRN-213ENST00000476930 MCM10Q7L590 875 aa14.89□□□□□ -0.03
PTPRN-213ENST00000476930 ZNF784Q8NCA9 323 aaPredicted RBP14.89□□□□□ -0.03
PTPRN-213ENST00000476930 HEG1Q9ULI3 1381 aa14.88□□□□□ -0.03
PTPRN-213ENST00000476930 GRIN3BO60391 1043 aa14.88□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms