RNA–Protein interactions for RNA: ENST00000476724.1

TMEM53-208, Transcript of transmembrane protein 53, humanhuman

TSL 1 (best)

Gene TMEM53, Length 2,075 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM53-208ENST00000476724 GNAT3A8MTJ3 354 aa20.52■□□□□ 0.88
TMEM53-208ENST00000476724 MIS18AQ9NYP9 233 aa20.52■□□□□ 0.88
TMEM53-208ENST00000476724 KRT24Q2M2I5 525 aa20.52■□□□□ 0.87
TMEM53-208ENST00000476724 DCTPP1Q9H773 170 aa20.52■□□□□ 0.87
TMEM53-208ENST00000476724 LMO7Q8WWI1 1683 aa20.51■□□□□ 0.87
TMEM53-208ENST00000476724 MAP3K5Q99683 1374 aa20.51■□□□□ 0.87
TMEM53-208ENST00000476724 SLKQ9H2G2 1235 aaPredicted RBP20.51■□□□□ 0.87
TMEM53-208ENST00000476724 LTBP4Q8N2S1 1624 aa20.51■□□□□ 0.87
TMEM53-208ENST00000476724 RGS12O14924 1447 aa20.51■□□□□ 0.87
TMEM53-208ENST00000476724 ABCA3Q99758 1704 aa20.5■□□□□ 0.87
TMEM53-208ENST00000476724 IL17REQ8NFR9 667 aa20.5■□□□□ 0.87
TMEM53-208ENST00000476724 ANKRD44Q8N8A2 993 aa20.49■□□□□ 0.87
TMEM53-208ENST00000476724 TSPYL4Q9UJ04 414 aa20.48■□□□□ 0.87
TMEM53-208ENST00000476724 FAM208AQ9UK61 1670 aaKnown RBP20.48■□□□□ 0.87
TMEM53-208ENST00000476724 CPDO75976 1380 aa20.47■□□□□ 0.87
TMEM53-208ENST00000476724 HSCBQ8IWL3 235 aa20.47■□□□□ 0.87
TMEM53-208ENST00000476724 SNX21Q969T3 373 aa20.47■□□□□ 0.87
TMEM53-208ENST00000476724 SLC4A2P04920 1241 aa20.46■□□□□ 0.87
TMEM53-208ENST00000476724 ROBO1Q9Y6N7 1651 aa20.46■□□□□ 0.87
TMEM53-208ENST00000476724 SOS1Q07889 1333 aaPredicted RBP20.46■□□□□ 0.87
TMEM53-208ENST00000476724 BABAM1Q9NWV8 329 aa20.45■□□□□ 0.86
TMEM53-208ENST00000476724 NLRP2Q9NX02 1062 aa20.45■□□□□ 0.86
TMEM53-208ENST00000476724 ABCC6O95255 1503 aa20.45■□□□□ 0.86
TMEM53-208ENST00000476724 ATP10DQ9P241 1426 aa20.45■□□□□ 0.86
TMEM53-208ENST00000476724 PLEKHO1Q53GL0 409 aaPredicted RBP20.44■□□□□ 0.86
TMEM53-208ENST00000476724 LGR6Q9HBX8 967 aa20.44■□□□□ 0.86
TMEM53-208ENST00000476724 CCT4P50991 539 aaKnown RBP20.43■□□□□ 0.86
TMEM53-208ENST00000476724 CEP85Q6P2H3 762 aa20.43■□□□□ 0.86
TMEM53-208ENST00000476724 ZNF530Q6P9A1 599 aaPredicted RBP20.43■□□□□ 0.86
TMEM53-208ENST00000476724 CHMP5Q9NZZ3 219 aa20.43■□□□□ 0.86
TMEM53-208ENST00000476724 CDC45O75419 566 aa20.42■□□□□ 0.86
TMEM53-208ENST00000476724 CSB-PGBD3P0DP91 1061 aa20.42■□□□□ 0.86
TMEM53-208ENST00000476724 TBC1D9Q6ZT07 1266 aa20.42■□□□□ 0.86
TMEM53-208ENST00000476724 PLEKHM2Q8IWE5 1019 aa20.42■□□□□ 0.86
TMEM53-208ENST00000476724 CEMIPQ8WUJ3 1361 aa20.42■□□□□ 0.86
TMEM53-208ENST00000476724 CACNA1FO60840 1977 aa20.41■□□□□ 0.86
TMEM53-208ENST00000476724 HMMRO75330 724 aa20.41■□□□□ 0.86
TMEM53-208ENST00000476724 AMOTQ4VCS5 1084 aa20.41■□□□□ 0.86
TMEM53-208ENST00000476724 AKAP4Q5JQC9 854 aa20.41■□□□□ 0.86
TMEM53-208ENST00000476724 STK31Q9BXU1 1019 aa20.41■□□□□ 0.86
TMEM53-208ENST00000476724 PRDM11Q9NQV5 511 aa20.41■□□□□ 0.86
TMEM53-208ENST00000476724 MEGF6O75095 1541 aa20.4■□□□□ 0.86
TMEM53-208ENST00000476724 MPRIPQ6WCQ1 1025 aa20.4■□□□□ 0.86
TMEM53-208ENST00000476724 TAF7Q15545 349 aaPredicted RBP20.39■□□□□ 0.86
TMEM53-208ENST00000476724 TTC22Q5TAA0 569 aa20.39■□□□□ 0.85
TMEM53-208ENST00000476724 CCDC30Q5VVM6 783 aa20.39■□□□□ 0.85
TMEM53-208ENST00000476724 MEIS3Q99687 375 aa20.39■□□□□ 0.85
TMEM53-208ENST00000476724 C1orf141Q5JVX7 400 aa20.37■□□□□ 0.85
TMEM53-208ENST00000476724 RAPGEF4Q8WZA2 1011 aa20.37■□□□□ 0.85
TMEM53-208ENST00000476724 KDM3BQ7LBC6 1761 aa20.36■□□□□ 0.85
TMEM53-208ENST00000476724 GSPT1P15170 499 aaKnown RBP20.36■□□□□ 0.85
TMEM53-208ENST00000476724 AHDC1Q5TGY3 1603 aaPredicted RBP20.36■□□□□ 0.85
TMEM53-208ENST00000476724 COL5A2P05997 1499 aaPredicted RBP20.35■□□□□ 0.85
TMEM53-208ENST00000476724 RNMTO43148 476 aaKnown RBP20.35■□□□□ 0.85
TMEM53-208ENST00000476724 G2E3Q7L622 706 aa20.35■□□□□ 0.85
TMEM53-208ENST00000476724 KIF2CQ99661 725 aa20.35■□□□□ 0.85
TMEM53-208ENST00000476724 TATP17735 454 aaPredicted RBP20.34■□□□□ 0.85
TMEM53-208ENST00000476724 SPRYD3Q8NCJ5 442 aa20.34■□□□□ 0.85
TMEM53-208ENST00000476724 SLC4A10Q6U841 1118 aa20.34■□□□□ 0.85
TMEM53-208ENST00000476724 CIZ1Q9ULV3 898 aaPredicted RBP20.34■□□□□ 0.85
TMEM53-208ENST00000476724 ADAMTS7Q9UKP4 1686 aa20.34■□□□□ 0.85
TMEM53-208ENST00000476724 WDR17Q8IZU2 1322 aa20.33■□□□□ 0.85
TMEM53-208ENST00000476724 GNAI2P04899 355 aa20.33■□□□□ 0.85
TMEM53-208ENST00000476724 SIPA1L3O60292 1781 aaPredicted RBP20.33■□□□□ 0.84
TMEM53-208ENST00000476724 GNAI3P08754 354 aa20.33■□□□□ 0.84
TMEM53-208ENST00000476724 MCM4P33991 863 aa20.33■□□□□ 0.84
TMEM53-208ENST00000476724 CASC1Q6TDU7 716 aa20.33■□□□□ 0.84
TMEM53-208ENST00000476724 PKD1L3Q7Z443 1732 aa20.32■□□□□ 0.84
TMEM53-208ENST00000476724 KCNQ3O43525 872 aa20.32■□□□□ 0.84
TMEM53-208ENST00000476724 DDIT3P35638 169 aa20.32■□□□□ 0.84
TMEM53-208ENST00000476724 TEFQ10587 303 aa20.32■□□□□ 0.84
TMEM53-208ENST00000476724 FLIIQ13045 1269 aa20.32■□□□□ 0.84
TMEM53-208ENST00000476724 CHMP4AQ9BY43 222 aa20.32■□□□□ 0.84
TMEM53-208ENST00000476724 F6X3S4 739 aa20.31■□□□□ 0.84
TMEM53-208ENST00000476724 C16orf71Q8IYS4 520 aaPredicted RBP20.31■□□□□ 0.84
TMEM53-208ENST00000476724 SCN11AQ9UI33 1791 aa20.31■□□□□ 0.84
TMEM53-208ENST00000476724 HSP90AB1P08238 724 aaKnown RBP20.31■□□□□ 0.84
TMEM53-208ENST00000476724 TOM1L2Q6ZVM7 507 aa20.31■□□□□ 0.84
TMEM53-208ENST00000476724 OSBPL3Q9H4L5 887 aa20.3■□□□□ 0.84
TMEM53-208ENST00000476724 BTBD11A6QL63 1104 aa20.3■□□□□ 0.84
TMEM53-208ENST00000476724 FKBP5Q13451 457 aaPredicted RBP20.3■□□□□ 0.84
TMEM53-208ENST00000476724 NECTIN2Q92692 538 aa20.3■□□□□ 0.84
TMEM53-208ENST00000476724 STRN4Q9NRL3 753 aa20.3■□□□□ 0.84
TMEM53-208ENST00000476724 PXDNLA1KZ92 1463 aa20.29■□□□□ 0.84
TMEM53-208ENST00000476724 OVOS2A0A0G2JMS6 1433 aa20.29■□□□□ 0.84
TMEM53-208ENST00000476724 KDM6AO15550 1401 aaPredicted RBP20.29■□□□□ 0.84
TMEM53-208ENST00000476724 COL22A1Q8NFW1 1626 aaPredicted RBP20.29■□□□□ 0.84
TMEM53-208ENST00000476724 N4BP2Q86UW6 1770 aaPredicted RBP20.29■□□□□ 0.84
TMEM53-208ENST00000476724 PHKG2P15735 406 aa20.29■□□□□ 0.84
TMEM53-208ENST00000476724 SPG7Q9UQ90 795 aa20.29■□□□□ 0.84
TMEM53-208ENST00000476724 PHLPP1O60346 1717 aa20.29■□□□□ 0.84
TMEM53-208ENST00000476724 PARP4Q9UKK3 1724 aaKnown RBP20.28■□□□□ 0.84
TMEM53-208ENST00000476724 K7ELQ4 463 aaPredicted RBP20.28■□□□□ 0.84
TMEM53-208ENST00000476724 EIF4A1P60842 406 aaKnown RBP20.28■□□□□ 0.84
TMEM53-208ENST00000476724 LARP1Q6PKG0 1096 aaKnown RBP20.28■□□□□ 0.84
TMEM53-208ENST00000476724 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.28■□□□□ 0.84
TMEM53-208ENST00000476724 CYP27B1O15528 508 aa20.27■□□□□ 0.84
TMEM53-208ENST00000476724 SDSP20132 328 aa20.27■□□□□ 0.84
TMEM53-208ENST00000476724 RABEP1Q15276 862 aa20.27■□□□□ 0.84
TMEM53-208ENST00000476724 COL16A1Q07092 1604 aaPredicted RBP20.27■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms