RNA–Protein interactions for RNA: ENST00000476215.5

PTCD3-211, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 754 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-211ENST00000476215 TAS1R3Q7RTX0 852 aa9.67□□□□□ -0.86
PTCD3-211ENST00000476215 EML3Q32P44 896 aa9.66□□□□□ -0.86
PTCD3-211ENST00000476215 SV2AQ7L0J3 742 aa9.66□□□□□ -0.86
PTCD3-211ENST00000476215 PPARGC1BQ86YN6 1023 aaKnown RBP9.66□□□□□ -0.86
PTCD3-211ENST00000476215 TRIM22Q8IYM9 498 aa9.66□□□□□ -0.86
PTCD3-211ENST00000476215 VWA5B2Q8N398 1253 aa9.66□□□□□ -0.86
PTCD3-211ENST00000476215 SLC4A9Q96Q91 983 aa9.66□□□□□ -0.86
PTCD3-211ENST00000476215 ZSCAN10Q96SZ4 725 aaPredicted RBP9.66□□□□□ -0.86
PTCD3-211ENST00000476215 USP17L5A8MUK1 530 aa9.65□□□□□ -0.86
PTCD3-211ENST00000476215 TMEM229AB2RXF0 380 aa9.65□□□□□ -0.86
PTCD3-211ENST00000476215 GDF10P55107 478 aa9.65□□□□□ -0.86
PTCD3-211ENST00000476215 ZNF295-AS1Q8N0V1 137 aa9.65□□□□□ -0.86
PTCD3-211ENST00000476215 ZSCAN1Q8NBB4 408 aa9.65□□□□□ -0.86
PTCD3-211ENST00000476215 SERPINA10Q9UK55 444 aa9.65□□□□□ -0.86
PTCD3-211ENST00000476215 STAU1O95793 577 aaKnown RBP9.64□□□□□ -0.87
PTCD3-211ENST00000476215 NCOA4Q13772 614 aa9.64□□□□□ -0.87
PTCD3-211ENST00000476215 MTFR1Q15390 333 aa9.64□□□□□ -0.87
PTCD3-211ENST00000476215 ZNF837Q96EG3 531 aaPredicted RBP9.64□□□□□ -0.87
PTCD3-211ENST00000476215 NOD1Q9Y239 953 aa9.64□□□□□ -0.87
PTCD3-211ENST00000476215 ATP9BO43861 1147 aa9.63□□□□□ -0.87
PTCD3-211ENST00000476215 RHBDD1Q8TEB9 315 aa9.63□□□□□ -0.87
PTCD3-211ENST00000476215 COL25A1Q9BXS0 654 aaPredicted RBP9.63□□□□□ -0.87
PTCD3-211ENST00000476215 TLR1Q15399 786 aa9.62□□□□□ -0.87
PTCD3-211ENST00000476215 DBN1Q16643 649 aa9.62□□□□□ -0.87
PTCD3-211ENST00000476215 C4orf17Q53FE4 359 aa9.62□□□□□ -0.87
PTCD3-211ENST00000476215 RNFT1Q5M7Z0 435 aa9.62□□□□□ -0.87
PTCD3-211ENST00000476215 TIMMDC1Q9NPL8 285 aa9.62□□□□□ -0.87
PTCD3-211ENST00000476215 A0A1B0GTH6 734 aa9.61□□□□□ -0.87
PTCD3-211ENST00000476215 F11P03951 625 aa9.61□□□□□ -0.87
PTCD3-211ENST00000476215 SLURP2P0DP57 97 aa9.61□□□□□ -0.87
PTCD3-211ENST00000476215 SMTNP53814 917 aa9.61□□□□□ -0.87
PTCD3-211ENST00000476215 GTF2IP78347 998 aa9.61□□□□□ -0.87
PTCD3-211ENST00000476215 GNASQ5JWF2 1037 aa9.61□□□□□ -0.87
PTCD3-211ENST00000476215 TBC1D9Q6ZT07 1266 aa9.61□□□□□ -0.87
PTCD3-211ENST00000476215 IQSEC3Q9UPP2 1182 aaPredicted RBP9.61□□□□□ -0.87
PTCD3-211ENST00000476215 CDC14CA4D256 554 aa9.6□□□□□ -0.87
PTCD3-211ENST00000476215 USP17L3A6NCW0 530 aa9.6□□□□□ -0.87
PTCD3-211ENST00000476215 USP17L4A6NCW7 530 aa9.6□□□□□ -0.87
PTCD3-211ENST00000476215 H7C1W4 665 aa9.6□□□□□ -0.87
PTCD3-211ENST00000476215 THBS1P07996 1170 aa9.6□□□□□ -0.87
PTCD3-211ENST00000476215 GAS6Q14393 721 aa9.6□□□□□ -0.87
PTCD3-211ENST00000476215 USP17L2Q6R6M4 530 aa9.6□□□□□ -0.87
PTCD3-211ENST00000476215 USP17L1Q7RTZ2 530 aa9.6□□□□□ -0.87
PTCD3-211ENST00000476215 LBRQ14739 615 aaKnown RBP9.59□□□□□ -0.87
PTCD3-211ENST00000476215 TMEM214Q6NUQ4 689 aaKnown RBP9.59□□□□□ -0.87
PTCD3-211ENST00000476215 CNTNAP3BQ96NU0 1288 aa9.59□□□□□ -0.87
PTCD3-211ENST00000476215 CNTNAP3Q9BZ76 1288 aa9.59□□□□□ -0.87
PTCD3-211ENST00000476215 CDK2AP1O14519 115 aa9.58□□□□□ -0.88
PTCD3-211ENST00000476215 GTF2E1P29083 439 aaPredicted RBP9.58□□□□□ -0.88
PTCD3-211ENST00000476215 TRIM50Q86XT4 487 aa9.58□□□□□ -0.88
PTCD3-211ENST00000476215 PPP1R12CQ9BZL4 782 aa9.58□□□□□ -0.88
PTCD3-211ENST00000476215 FAM181BA6NEQ2 426 aa9.57□□□□□ -0.88
PTCD3-211ENST00000476215 A6NJY4 79 aa9.57□□□□□ -0.88
PTCD3-211ENST00000476215 ZBTB7BO15156 539 aaPredicted RBP9.57□□□□□ -0.88
PTCD3-211ENST00000476215 EPHA4P54764 986 aa9.57□□□□□ -0.88
PTCD3-211ENST00000476215 UBAP2LQ14157 1087 aaKnown RBP9.57□□□□□ -0.88
PTCD3-211ENST00000476215 DEPDC4Q8N2C3 294 aa9.57□□□□□ -0.88
PTCD3-211ENST00000476215 TFIP11Q9UBB9 837 aaKnown RBP9.57□□□□□ -0.88
PTCD3-211ENST00000476215 PALM3A6NDB9 673 aaPredicted RBP9.56□□□□□ -0.88
PTCD3-211ENST00000476215 BACH1O14867 736 aa9.56□□□□□ -0.88
PTCD3-211ENST00000476215 FOXK2Q01167 660 aa9.56□□□□□ -0.88
PTCD3-211ENST00000476215 C1orf216Q8TAB5 229 aa9.56□□□□□ -0.88
PTCD3-211ENST00000476215 GAS2L1Q99501 681 aaPredicted RBP9.56□□□□□ -0.88
PTCD3-211ENST00000476215 CRISPLD1Q9H336 500 aa9.56□□□□□ -0.88
PTCD3-211ENST00000476215 ZNF358Q9NW07 568 aa9.56□□□□□ -0.88
PTCD3-211ENST00000476215 DKK1O94907 266 aa9.55□□□□□ -0.88
PTCD3-211ENST00000476215 MSX1P28360 303 aa9.55□□□□□ -0.88
PTCD3-211ENST00000476215 ATP1A2P50993 1020 aa9.55□□□□□ -0.88
PTCD3-211ENST00000476215 CLDN10P78369 228 aa9.55□□□□□ -0.88
PTCD3-211ENST00000476215 SRSF11Q05519 484 aaKnown RBP9.55□□□□□ -0.88
PTCD3-211ENST00000476215 RIPOR1Q6ZS17 1223 aa9.55□□□□□ -0.88
PTCD3-211ENST00000476215 NUCKS1Q9H1E3 243 aaKnown RBP9.55□□□□□ -0.88
PTCD3-211ENST00000476215 MAFBQ9Y5Q3 323 aaPredicted RBP9.55□□□□□ -0.88
PTCD3-211ENST00000476215 M0R2N6 131 aa9.54□□□□□ -0.88
PTCD3-211ENST00000476215 RFX1P22670 979 aa9.54□□□□□ -0.88
PTCD3-211ENST00000476215 PHKA2P46019 1235 aa9.54□□□□□ -0.88
PTCD3-211ENST00000476215 SIX5Q8N196 739 aa9.54□□□□□ -0.88
PTCD3-211ENST00000476215 LARGE2Q8N3Y3 721 aa9.54□□□□□ -0.88
PTCD3-211ENST00000476215 NIFKQ9BYG3 293 aaKnown RBP9.54□□□□□ -0.88
PTCD3-211ENST00000476215 SCHIP1Q9P0W5 487 aaPredicted RBP9.54□□□□□ -0.88
PTCD3-211ENST00000476215 KIAA1024Q9UPX6 916 aa9.54□□□□□ -0.88
PTCD3-211ENST00000476215 USP3Q9Y6I4 520 aa9.54□□□□□ -0.88
PTCD3-211ENST00000476215 ATP4AP20648 1035 aa9.53□□□□□ -0.88
PTCD3-211ENST00000476215 LMOD1P29536 600 aaPredicted RBP9.53□□□□□ -0.88
PTCD3-211ENST00000476215 CFAP70Q5T0N1 1121 aa9.53□□□□□ -0.88
PTCD3-211ENST00000476215 SERBP1Q8NC51 408 aaKnown RBP eCLIP9.53□□□□□ -0.88
PTCD3-211ENST00000476215 GTPBP3Q969Y2 492 aaKnown RBP9.53□□□□□ -0.88
PTCD3-211ENST00000476215 CFHR5Q9BXR6 569 aa9.53□□□□□ -0.88
PTCD3-211ENST00000476215 MBIPQ9NS73 344 aa9.53□□□□□ -0.88
PTCD3-211ENST00000476215 SERTAD1Q9UHV2 236 aa9.53□□□□□ -0.88
PTCD3-211ENST00000476215 ZNF385CQ66K41 422 aaPredicted RBP9.52□□□□□ -0.89
PTCD3-211ENST00000476215 FOXR1Q6PIV2 292 aa9.52□□□□□ -0.89
PTCD3-211ENST00000476215 POTEAQ6S8J7 498 aa9.52□□□□□ -0.89
PTCD3-211ENST00000476215 ZDHHC3Q9NYG2 299 aa9.52□□□□□ -0.89
PTCD3-211ENST00000476215 MKRN1Q9UHC7 482 aaKnown RBP9.52□□□□□ -0.89
PTCD3-211ENST00000476215 PLA2G4AP47712 749 aa9.51□□□□□ -0.89
PTCD3-211ENST00000476215 OGFOD1Q8N543 542 aa9.51□□□□□ -0.89
PTCD3-211ENST00000476215 NDFIP2Q9NV92 336 aa9.51□□□□□ -0.89
PTCD3-211ENST00000476215 DNAAF2Q9NVR5 837 aaKnown RBP9.51□□□□□ -0.89
PTCD3-211ENST00000476215 ADAMTS2O95450 1211 aa9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 80.7 ms