RNA–Protein interactions for RNA: ENST00000476183.2

LIME1-204, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 5

Gene LIME1, Length 809 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-204ENST00000476183 DDX10Q13206 875 aaKnown RBP28.42■■■□□ 2.14
LIME1-204ENST00000476183 COL23A1Q86Y22 540 aaPredicted RBP28.42■■■□□ 2.14
LIME1-204ENST00000476183 SLC4A9Q96Q91 983 aa28.42■■■□□ 2.14
LIME1-204ENST00000476183 VIRMAQ69YN4 1812 aaKnown RBP28.41■■■□□ 2.14
LIME1-204ENST00000476183 AMIGO3Q86WK7 504 aa28.41■■■□□ 2.14
LIME1-204ENST00000476183 SLC16A10Q8TF71 515 aa28.41■■■□□ 2.14
LIME1-204ENST00000476183 ATP6V1AP38606 617 aa28.4■■■□□ 2.14
LIME1-204ENST00000476183 RSPH6AQ9H0K4 717 aa28.4■■■□□ 2.14
LIME1-204ENST00000476183 ADAMTS7Q9UKP4 1686 aa28.39■■■□□ 2.14
LIME1-204ENST00000476183 RNMTO43148 476 aaKnown RBP28.39■■■□□ 2.14
LIME1-204ENST00000476183 HMGB2P26583 209 aaKnown RBP28.39■■■□□ 2.14
LIME1-204ENST00000476183 NUDCQ9Y266 331 aa28.39■■■□□ 2.14
LIME1-204ENST00000476183 COL24A1Q17RW2 1714 aa28.38■■■□□ 2.13
LIME1-204ENST00000476183 UBR3Q6ZT12 1888 aa28.38■■■□□ 2.13
LIME1-204ENST00000476183 PRKAR2BP31323 418 aa28.37■■■□□ 2.13
LIME1-204ENST00000476183 SMIM5Q71RC9 77 aa28.37■■■□□ 2.13
LIME1-204ENST00000476183 PHACTR3Q96KR7 559 aa28.37■■■□□ 2.13
LIME1-204ENST00000476183 AK7Q96M32 723 aa28.37■■■□□ 2.13
LIME1-204ENST00000476183 RBM42Q9BTD8 480 aaKnown RBP28.37■■■□□ 2.13
LIME1-204ENST00000476183 SLC52A2Q9HAB3 445 aa28.37■■■□□ 2.13
LIME1-204ENST00000476183 MRC1P22897 1456 aa28.37■■■□□ 2.13
LIME1-204ENST00000476183 ZNF831Q5JPB2 1677 aa28.36■■■□□ 2.13
LIME1-204ENST00000476183 U2AF1L5P0DN76 240 aaPredicted RBP28.36■■■□□ 2.13
LIME1-204ENST00000476183 U2AF1Q01081 240 aaKnown RBP eCLIP28.36■■■□□ 2.13
LIME1-204ENST00000476183 MSH5O43196 834 aa28.35■■■□□ 2.13
LIME1-204ENST00000476183 GAS2L2Q8NHY3 880 aa28.34■■■□□ 2.13
LIME1-204ENST00000476183 ZEB1P37275 1124 aaPredicted RBP28.33■■■□□ 2.13
LIME1-204ENST00000476183 PTCD1O75127 700 aaKnown RBP28.32■■■□□ 2.12
LIME1-204ENST00000476183 FLAD1Q8NFF5 587 aa28.32■■■□□ 2.12
LIME1-204ENST00000476183 ARXQ96QS3 562 aa28.32■■■□□ 2.12
LIME1-204ENST00000476183 MAP3K5Q99683 1374 aa28.32■■■□□ 2.12
LIME1-204ENST00000476183 COL5A3P25940 1745 aaPredicted RBP28.32■■■□□ 2.12
LIME1-204ENST00000476183 PHF14O94880 888 aa28.31■■■□□ 2.12
LIME1-204ENST00000476183 FHDC1Q9C0D6 1143 aaPredicted RBP28.31■■■□□ 2.12
LIME1-204ENST00000476183 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP28.3■■■□□ 2.12
LIME1-204ENST00000476183 GNAT3A8MTJ3 354 aa28.29■■■□□ 2.12
LIME1-204ENST00000476183 GNPATO15228 680 aa28.29■■■□□ 2.12
LIME1-204ENST00000476183 FCHSD2O94868 740 aa28.29■■■□□ 2.12
LIME1-204ENST00000476183 SLC39A6Q13433 755 aa28.29■■■□□ 2.12
LIME1-204ENST00000476183 RALBP1Q15311 655 aa28.29■■■□□ 2.12
LIME1-204ENST00000476183 MSL1Q68DK7 614 aa28.29■■■□□ 2.12
LIME1-204ENST00000476183 IL17REQ8NFR9 667 aa28.29■■■□□ 2.12
LIME1-204ENST00000476183 SSFA2P28290 1259 aa28.28■■■□□ 2.12
LIME1-204ENST00000476183 POLD1P28340 1107 aa28.28■■■□□ 2.12
LIME1-204ENST00000476183 SYT17Q9BSW7 474 aa28.27■■■□□ 2.12
LIME1-204ENST00000476183 MYH14Q7Z406 1995 aaKnown RBP28.27■■■□□ 2.12
LIME1-204ENST00000476183 TJP1Q07157 1748 aa28.26■■■□□ 2.12
LIME1-204ENST00000476183 RC3H1Q5TC82 1133 aaKnown RBP28.25■■■□□ 2.11
LIME1-204ENST00000476183 CICQ96RK0 1608 aaPredicted RBP28.25■■■□□ 2.11
LIME1-204ENST00000476183 CNTNAP4Q9C0A0 1308 aa28.24■■■□□ 2.11
LIME1-204ENST00000476183 KCPQ6ZWJ8 1503 aa28.24■■■□□ 2.11
LIME1-204ENST00000476183 SIPA1L3O60292 1781 aaPredicted RBP28.23■■■□□ 2.11
LIME1-204ENST00000476183 CEMIPQ8WUJ3 1361 aa28.23■■■□□ 2.11
LIME1-204ENST00000476183 RTCBQ9Y3I0 505 aaKnown RBP28.21■■■□□ 2.11
LIME1-204ENST00000476183 UBR2Q8IWV8 1755 aa28.2■■■□□ 2.11
LIME1-204ENST00000476183 CRKLP46109 303 aaKnown RBP28.2■■■□□ 2.1
LIME1-204ENST00000476183 TEFQ10587 303 aa28.2■■■□□ 2.1
LIME1-204ENST00000476183 DNAJC10Q8IXB1 793 aa28.2■■■□□ 2.1
LIME1-204ENST00000476183 RPS6KA4O75676 772 aa28.19■■■□□ 2.1
LIME1-204ENST00000476183 MYBBP1AQ9BQG0 1328 aaKnown RBP28.18■■■□□ 2.1
LIME1-204ENST00000476183 PLEKHF1Q96S99 279 aa28.18■■■□□ 2.1
LIME1-204ENST00000476183 TRAPPC3LQ5T215 181 aa28.17■■■□□ 2.1
LIME1-204ENST00000476183 KLHL34Q8N239 644 aa28.17■■■□□ 2.1
LIME1-204ENST00000476183 INTS5Q6P9B9 1019 aaKnown RBP28.16■■■□□ 2.1
LIME1-204ENST00000476183 MCM10Q7L590 875 aa28.16■■■□□ 2.1
LIME1-204ENST00000476183 ARHGEF1Q92888 912 aaKnown RBP28.16■■■□□ 2.1
LIME1-204ENST00000476183 UTRNP46939 3433 aa28.15■■■□□ 2.1
LIME1-204ENST00000476183 ADRA2BP18089 450 aa28.15■■■□□ 2.1
LIME1-204ENST00000476183 DCTN1Q14203 1278 aa28.14■■■□□ 2.1
LIME1-204ENST00000476183 ZNF790Q6PG37 636 aa28.14■■■□□ 2.1
LIME1-204ENST00000476183 TTC5Q8N0Z6 440 aa28.14■■■□□ 2.1
LIME1-204ENST00000476183 C4AP0C0L4 1744 aa28.13■■■□□ 2.09
LIME1-204ENST00000476183 CYP19A1P11511 503 aaPredicted RBP28.13■■■□□ 2.09
LIME1-204ENST00000476183 VSIG10Q8N0Z9 540 aa28.13■■■□□ 2.09
LIME1-204ENST00000476183 RTF1Q92541 710 aaKnown RBP28.13■■■□□ 2.09
LIME1-204ENST00000476183 DLG5Q8TDM6 1919 aa28.12■■■□□ 2.09
LIME1-204ENST00000476183 ZNF496Q96IT1 587 aaPredicted RBP28.12■■■□□ 2.09
LIME1-204ENST00000476183 PRKRIP1Q9H875 184 aaPredicted RBP28.12■■■□□ 2.09
LIME1-204ENST00000476183 KCNQ3O43525 872 aa28.11■■■□□ 2.09
LIME1-204ENST00000476183 HTATSF1O43719 755 aaKnown RBP28.11■■■□□ 2.09
LIME1-204ENST00000476183 NLGN2Q8NFZ4 835 aa28.11■■■□□ 2.09
LIME1-204ENST00000476183 CCDC87Q9NVE4 849 aa28.11■■■□□ 2.09
LIME1-204ENST00000476183 BTBD11A6QL63 1104 aa28.09■■■□□ 2.09
LIME1-204ENST00000476183 RFC4P35249 363 aa28.09■■■□□ 2.09
LIME1-204ENST00000476183 HEG1Q9ULI3 1381 aa28.09■■■□□ 2.09
LIME1-204ENST00000476183 GOLGB1Q14789 3259 aaKnown RBP28.09■■■□□ 2.09
LIME1-204ENST00000476183 DCAF8L1A6NGE4 600 aa28.08■■■□□ 2.09
LIME1-204ENST00000476183 NEFMP07197 916 aa28.08■■■□□ 2.09
LIME1-204ENST00000476183 GYS1P13807 737 aa28.08■■■□□ 2.09
LIME1-204ENST00000476183 NFE2L2Q16236 605 aa28.07■■■□□ 2.08
LIME1-204ENST00000476183 ZBTB1Q9Y2K1 713 aa28.07■■■□□ 2.08
LIME1-204ENST00000476183 SOS1Q07889 1333 aaPredicted RBP28.07■■■□□ 2.08
LIME1-204ENST00000476183 MMP10P09238 476 aa28.06■■■□□ 2.08
LIME1-204ENST00000476183 SRP68Q9UHB9 627 aaKnown RBP28.06■■■□□ 2.08
LIME1-204ENST00000476183 FMNL2Q96PY5 1086 aa28.05■■■□□ 2.08
LIME1-204ENST00000476183 PNNQ9H307 717 aaKnown RBP28.05■■■□□ 2.08
LIME1-204ENST00000476183 USP42Q9H9J4 1324 aaKnown RBP28.04■■■□□ 2.08
LIME1-204ENST00000476183 MAPK8IP3Q9UPT6 1336 aa28.04■■■□□ 2.08
LIME1-204ENST00000476183 NLGN1Q8N2Q7 840 aa28.04■■■□□ 2.08
LIME1-204ENST00000476183 CD2APQ9Y5K6 639 aa28.04■■■□□ 2.08
Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms