RNA–Protein interactions for RNA: ENST00000476169.1

VPS13D-207, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 475 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-207ENST00000476169 SCG3Q8WXD2 468 aaKnown RBP6.59□□□□□ -1.35
VPS13D-207ENST00000476169 VTI1AQ96AJ9 217 aa6.59□□□□□ -1.35
VPS13D-207ENST00000476169 ETNK1Q9HBU6 452 aa6.59□□□□□ -1.35
VPS13D-207ENST00000476169 DNMT3AQ9Y6K1 912 aaPredicted RBP6.59□□□□□ -1.35
VPS13D-207ENST00000476169 WNT7AO00755 349 aa6.58□□□□□ -1.36
VPS13D-207ENST00000476169 FOXO3O43524 673 aa6.58□□□□□ -1.36
VPS13D-207ENST00000476169 LILRA1O75019 489 aa6.58□□□□□ -1.36
VPS13D-207ENST00000476169 ESCO1Q5FWF5 840 aa6.58□□□□□ -1.36
VPS13D-207ENST00000476169 COL26A1Q96A83 441 aa6.58□□□□□ -1.36
VPS13D-207ENST00000476169 PGPEP1Q9NXJ5 209 aa6.58□□□□□ -1.36
VPS13D-207ENST00000476169 ATAD2Q6PL18 1390 aa6.57□□□□□ -1.36
VPS13D-207ENST00000476169 GNRH1P01148 92 aa6.57□□□□□ -1.36
VPS13D-207ENST00000476169 HMGB1P09429 215 aaKnown RBP6.57□□□□□ -1.36
VPS13D-207ENST00000476169 SLC19A1P41440 591 aa6.57□□□□□ -1.36
VPS13D-207ENST00000476169 FKBP4Q02790 459 aaKnown RBP eCLIP6.57□□□□□ -1.36
VPS13D-207ENST00000476169 SF3B2Q13435 895 aaKnown RBP6.57□□□□□ -1.36
VPS13D-207ENST00000476169 NAA30Q147X3 362 aaPredicted RBP6.57□□□□□ -1.36
VPS13D-207ENST00000476169 CHMP7Q8WUX9 453 aaPredicted RBP6.57□□□□□ -1.36
VPS13D-207ENST00000476169 EMID1Q96A84 441 aaPredicted RBP6.57□□□□□ -1.36
VPS13D-207ENST00000476169 MRGPRX2Q96LB1 330 aa6.57□□□□□ -1.36
VPS13D-207ENST00000476169 TSPAN10Q9H1Z9 355 aaPredicted RBP6.57□□□□□ -1.36
VPS13D-207ENST00000476169 RBM47A0AV96 593 aaKnown RBP6.56□□□□□ -1.36
VPS13D-207ENST00000476169 PPP1R12BO60237 982 aaPredicted RBP6.56□□□□□ -1.36
VPS13D-207ENST00000476169 NR3C2P08235 984 aa6.56□□□□□ -1.36
VPS13D-207ENST00000476169 EPHA4P54764 986 aa6.56□□□□□ -1.36
VPS13D-207ENST00000476169 MTMR3Q13615 1198 aa6.56□□□□□ -1.36
VPS13D-207ENST00000476169 SPNS2Q8IVW8 549 aa6.56□□□□□ -1.36
VPS13D-207ENST00000476169 SLC4A9Q96Q91 983 aa6.56□□□□□ -1.36
VPS13D-207ENST00000476169 RAB6BQ9NRW1 208 aa6.56□□□□□ -1.36
VPS13D-207ENST00000476169 EMILIN1Q9Y6C2 1016 aa6.56□□□□□ -1.36
VPS13D-207ENST00000476169 ANKRD33BA6NCL7 494 aa6.55□□□□□ -1.36
VPS13D-207ENST00000476169 MAPK1P28482 360 aa6.55□□□□□ -1.36
VPS13D-207ENST00000476169 ADD1P35611 737 aaKnown RBP6.55□□□□□ -1.36
VPS13D-207ENST00000476169 NOM1Q5C9Z4 860 aaKnown RBP6.55□□□□□ -1.36
VPS13D-207ENST00000476169 HELQQ8TDG4 1101 aa6.55□□□□□ -1.36
VPS13D-207ENST00000476169 ARHGEF10LQ9HCE6 1279 aa6.55□□□□□ -1.36
VPS13D-207ENST00000476169 A6NJY4 79 aa6.54□□□□□ -1.36
VPS13D-207ENST00000476169 ALDH1A1P00352 501 aa6.54□□□□□ -1.36
VPS13D-207ENST00000476169 SMTNP53814 917 aa6.54□□□□□ -1.36
VPS13D-207ENST00000476169 TBCELQ5QJ74 424 aa6.54□□□□□ -1.36
VPS13D-207ENST00000476169 SLC9A9Q8IVB4 645 aa6.54□□□□□ -1.36
VPS13D-207ENST00000476169 BCL2L13Q9BXK5 485 aa6.54□□□□□ -1.36
VPS13D-207ENST00000476169 UTP3Q9NQZ2 479 aaKnown RBP eCLIP6.54□□□□□ -1.361e-6■■■■■ 103.4
VPS13D-207ENST00000476169 SCHIP1Q9P0W5 487 aaPredicted RBP6.54□□□□□ -1.36
VPS13D-207ENST00000476169 DCTN4Q9UJW0 460 aa6.54□□□□□ -1.36
VPS13D-207ENST00000476169 UNCXA6NJT0 531 aa6.53□□□□□ -1.36
VPS13D-207ENST00000476169 CDK11BP21127 795 aaKnown RBP6.53□□□□□ -1.36
VPS13D-207ENST00000476169 ARHGAP4P98171 946 aa6.53□□□□□ -1.36
VPS13D-207ENST00000476169 FOXK2Q01167 660 aa6.53□□□□□ -1.36
VPS13D-207ENST00000476169 NNTQ13423 1086 aa6.53□□□□□ -1.36
VPS13D-207ENST00000476169 CDK11AQ9UQ88 783 aaPredicted RBP6.53□□□□□ -1.36
VPS13D-207ENST00000476169 WASF2Q9Y6W5 498 aa6.53□□□□□ -1.36
VPS13D-207ENST00000476169 A0A1W2PRU2 124 aa6.52□□□□□ -1.37
VPS13D-207ENST00000476169 FAM13AO94988 1023 aa6.52□□□□□ -1.37
VPS13D-207ENST00000476169 IL2RAP01589 272 aa6.52□□□□□ -1.37
VPS13D-207ENST00000476169 ADH1AP07327 375 aa6.52□□□□□ -1.37
VPS13D-207ENST00000476169 PSMA6P60900 246 aaKnown RBP6.52□□□□□ -1.37
VPS13D-207ENST00000476169 MTFR1Q15390 333 aa6.52□□□□□ -1.37
VPS13D-207ENST00000476169 TLR1Q15399 786 aa6.52□□□□□ -1.37
VPS13D-207ENST00000476169 ECM1Q16610 540 aa6.52□□□□□ -1.37
VPS13D-207ENST00000476169 ZNF697Q5TEC3 545 aa6.52□□□□□ -1.37
VPS13D-207ENST00000476169 SPRYD7Q5W111 196 aa6.52□□□□□ -1.37
VPS13D-207ENST00000476169 C16orf46Q6P387 395 aa6.52□□□□□ -1.37
VPS13D-207ENST00000476169 NPAS4Q8IUM7 802 aa6.52□□□□□ -1.37
VPS13D-207ENST00000476169 ZSCAN29Q8IWY8 852 aaPredicted RBP6.52□□□□□ -1.37
VPS13D-207ENST00000476169 GIPC2Q8TF65 315 aa6.52□□□□□ -1.37
VPS13D-207ENST00000476169 XAGE2Q96GT9 111 aa6.52□□□□□ -1.37
VPS13D-207ENST00000476169 ASB16Q96NS5 453 aa6.52□□□□□ -1.37
VPS13D-207ENST00000476169 CHMP3Q9Y3E7 222 aa6.52□□□□□ -1.37
VPS13D-207ENST00000476169 HSP90B1P14625 803 aaKnown RBP6.51□□□□□ -1.37
VPS13D-207ENST00000476169 ZNF16P17020 682 aaPredicted RBP6.51□□□□□ -1.37
VPS13D-207ENST00000476169 FOXC1Q12948 553 aa6.51□□□□□ -1.37
VPS13D-207ENST00000476169 STAG2Q8N3U4 1231 aa6.51□□□□□ -1.37
VPS13D-207ENST00000476169 CNKSR1Q969H4 720 aa6.51□□□□□ -1.37
VPS13D-207ENST00000476169 C2orf49Q9BVC5 232 aaPredicted RBP6.51□□□□□ -1.37
VPS13D-207ENST00000476169 SAP130Q9H0E3 1048 aa6.51□□□□□ -1.37
VPS13D-207ENST00000476169 CDK2AP1O14519 115 aa6.5□□□□□ -1.37
VPS13D-207ENST00000476169 NPR3P17342 541 aa6.5□□□□□ -1.37
VPS13D-207ENST00000476169 MPSTP25325 297 aa6.5□□□□□ -1.37
VPS13D-207ENST00000476169 CBLBQ13191 982 aa6.5□□□□□ -1.37
VPS13D-207ENST00000476169 IFFO2Q5TF58 517 aa6.5□□□□□ -1.37
VPS13D-207ENST00000476169 NBPF15Q8N660 670 aa6.5□□□□□ -1.37
VPS13D-207ENST00000476169 ESYT1Q9BSJ8 1104 aa6.5□□□□□ -1.37
VPS13D-207ENST00000476169 MEN1O00255 615 aa6.49□□□□□ -1.37
VPS13D-207ENST00000476169 CLN3Q13286 438 aa6.49□□□□□ -1.37
VPS13D-207ENST00000476169 ZNF598Q86UK7 904 aaKnown RBP6.49□□□□□ -1.37
VPS13D-207ENST00000476169 SNIP1Q8TAD8 396 aaKnown RBP6.49□□□□□ -1.37
VPS13D-207ENST00000476169 NLRP3Q96P20 1036 aa6.49□□□□□ -1.37
VPS13D-207ENST00000476169 USP3Q9Y6I4 520 aa6.49□□□□□ -1.37
VPS13D-207ENST00000476169 SERTM1A2A2V5 107 aa6.48□□□□□ -1.37
VPS13D-207ENST00000476169 NDUFB5O43674 189 aa6.48□□□□□ -1.37
VPS13D-207ENST00000476169 ZIC2O95409 532 aaPredicted RBP6.48□□□□□ -1.37
VPS13D-207ENST00000476169 PTGIRP43119 386 aa6.48□□□□□ -1.37
VPS13D-207ENST00000476169 AAMPQ13685 434 aa6.48□□□□□ -1.37
VPS13D-207ENST00000476169 ZNF326Q5BKZ1 582 aaKnown RBP6.48□□□□□ -1.37
VPS13D-207ENST00000476169 COX20Q5RI15 118 aa6.48□□□□□ -1.37
VPS13D-207ENST00000476169 RGL4Q8IZJ4 473 aa6.48□□□□□ -1.37
VPS13D-207ENST00000476169 ITPKCQ96DU7 683 aa6.48□□□□□ -1.37
VPS13D-207ENST00000476169 MRRFQ96E11 262 aaKnown RBP6.48□□□□□ -1.37
VPS13D-207ENST00000476169 NGLY1Q96IV0 654 aa6.48□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms