RNA–Protein interactions for RNA: ENST00000474426.1

UBR3-208, Transcript of ubiquitin protein ligase E3 component n-recognin 3, human

TSL 1 (best)

Gene UBR3, Length 4,066 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR3-208	ENST00000474426	MAGEA8	P43361	318 aa		4.22	□□□□□ -1.73
UBR3-208	ENST00000474426	SLC7A5	Q01650	507 aa		4.22	□□□□□ -1.73
UBR3-208	ENST00000474426	ZCCHC8	Q6NZY4	707 aa	Known RBP	4.22	□□□□□ -1.73
UBR3-208	ENST00000474426	RAVER1	Q8IY67	606 aa	Known RBP	4.22	□□□□□ -1.73
UBR3-208	ENST00000474426	NOL10	Q9BSC4	688 aa	Known RBP	4.22	□□□□□ -1.73
UBR3-208	ENST00000474426	TEX13A	Q9BXU3	409 aa	Predicted RBP	4.22	□□□□□ -1.73
UBR3-208	ENST00000474426	TSPYL2	Q9H2G4	693 aa	Predicted RBP	4.22	□□□□□ -1.73
UBR3-208	ENST00000474426	TBC1D2B	Q9UPU7	963 aa		4.22	□□□□□ -1.73
UBR3-208	ENST00000474426	NOP2	P46087	812 aa	Known RBP	4.22	□□□□□ -1.73
UBR3-208	ENST00000474426	KCNJ4	P48050	445 aa		4.22	□□□□□ -1.73
UBR3-208	ENST00000474426	RIPK4	P57078	832 aa		4.22	□□□□□ -1.73
UBR3-208	ENST00000474426	UBE4A	Q14139	1066 aa		4.22	□□□□□ -1.73
UBR3-208	ENST00000474426	PDXDC1	Q6P996	788 aa		4.22	□□□□□ -1.73
UBR3-208	ENST00000474426	CCDC174	Q6PII3	467 aa		4.22	□□□□□ -1.73
UBR3-208	ENST00000474426	MTERF4	Q7Z6M4	381 aa	Known RBP	4.22	□□□□□ -1.73
UBR3-208	ENST00000474426	JAZF1	Q86VZ6	243 aa		4.22	□□□□□ -1.73
UBR3-208	ENST00000474426	LMNTD2	Q8IXW0	634 aa		4.22	□□□□□ -1.73
UBR3-208	ENST00000474426	TNPO1	Q92973	898 aa	Known RBP	4.22	□□□□□ -1.73
UBR3-208	ENST00000474426	FAM163A	Q96GL9	167 aa	Predicted RBP	4.22	□□□□□ -1.73
UBR3-208	ENST00000474426	RWDD1	Q9H446	243 aa	Predicted RBP	4.22	□□□□□ -1.73
UBR3-208	ENST00000474426	HOXC10	Q9NYD6	342 aa		4.22	□□□□□ -1.73
UBR3-208	ENST00000474426	RABL2A	Q9UBK7	228 aa	Predicted RBP	4.22	□□□□□ -1.73
UBR3-208	ENST00000474426	ODF2L	Q9ULJ1	636 aa		4.22	□□□□□ -1.73
UBR3-208	ENST00000474426	ESPN	B1AK53	854 aa		4.22	□□□□□ -1.73
UBR3-208	ENST00000474426	ATIC	P31939	592 aa		4.22	□□□□□ -1.73
UBR3-208	ENST00000474426	SOGA3	Q5TF21	947 aa		4.22	□□□□□ -1.73
UBR3-208	ENST00000474426	UBE2Q1	Q7Z7E8	422 aa		4.22	□□□□□ -1.73
UBR3-208	ENST00000474426	FRAT1	Q92837	279 aa	Predicted RBP	4.22	□□□□□ -1.73
UBR3-208	ENST00000474426	PCDH12	Q9NPG4	1184 aa		4.22	□□□□□ -1.73
UBR3-208	ENST00000474426	UTP6	Q9NYH9	597 aa	Known RBP	4.22	□□□□□ -1.73
UBR3-208	ENST00000474426	DMGDH	Q9UI17	866 aa	Known RBP	4.22	□□□□□ -1.73
UBR3-208	ENST00000474426	TMCC3	Q9ULS5	477 aa		4.22	□□□□□ -1.73
UBR3-208	ENST00000474426	TTF2	Q9UNY4	1162 aa	Known RBP	4.22	□□□□□ -1.73
UBR3-208	ENST00000474426	COL4A3BP	Q9Y5P4	624 aa		4.22	□□□□□ -1.73
UBR3-208	ENST00000474426	BBOX1	O75936	387 aa		4.21	□□□□□ -1.73
UBR3-208	ENST00000474426	FOSL1	P15407	271 aa		4.21	□□□□□ -1.73
UBR3-208	ENST00000474426	XBP1	P17861	261 aa		4.21	□□□□□ -1.73
UBR3-208	ENST00000474426	HOXD10	P28358	340 aa		4.21	□□□□□ -1.73
UBR3-208	ENST00000474426	STIP1	P31948	543 aa	Known RBP	4.21	□□□□□ -1.73
UBR3-208	ENST00000474426	PPP2R5B	Q15173	497 aa		4.21	□□□□□ -1.73
UBR3-208	ENST00000474426	L1TD1	Q5T7N2	865 aa	Known RBP	4.21	□□□□□ -1.73
UBR3-208	ENST00000474426	RELL1	Q8IUW5	271 aa		4.21	□□□□□ -1.73
UBR3-208	ENST00000474426	NELL1	Q92832	810 aa		4.21	□□□□□ -1.73
UBR3-208	ENST00000474426	NOL7	Q9UMY1	257 aa	Known RBP	4.21	□□□□□ -1.73
UBR3-208	ENST00000474426	THRAP3	Q9Y2W1	955 aa	Known RBP	4.21	□□□□□ -1.73
UBR3-208	ENST00000474426	DDX49	Q9Y6V7	483 aa	Known RBP	4.21	□□□□□ -1.73
UBR3-208	ENST00000474426	ANKRD18B	A2A2Z9	1011 aa		4.21	□□□□□ -1.74
UBR3-208	ENST00000474426	PPFIA3	O75145	1194 aa		4.21	□□□□□ -1.74
UBR3-208	ENST00000474426	LDHA	P00338	332 aa	Known RBP	4.21	□□□□□ -1.74
UBR3-208	ENST00000474426	NBPF7	P0C2Y1	421 aa	Predicted RBP	4.21	□□□□□ -1.74
UBR3-208	ENST00000474426	RBP3	P10745	1247 aa		4.21	□□□□□ -1.74
UBR3-208	ENST00000474426	RBM6	P78332	1123 aa	Known RBP	4.21	□□□□□ -1.74
UBR3-208	ENST00000474426	C10orf62	Q5T681	223 aa	Predicted RBP	4.21	□□□□□ -1.74
UBR3-208	ENST00000474426	FRS2	Q8WU20	508 aa		4.21	□□□□□ -1.74
UBR3-208	ENST00000474426	BCL2L13	Q9BXK5	485 aa		4.21	□□□□□ -1.74
UBR3-208	ENST00000474426	PDGFD	Q9GZP0	370 aa	Predicted RBP	4.21	□□□□□ -1.74
UBR3-208	ENST00000474426	TSPYL1	Q9H0U9	437 aa		4.21	□□□□□ -1.74
UBR3-208	ENST00000474426	SUFU	Q9UMX1	484 aa		4.21	□□□□□ -1.74
UBR3-208	ENST00000474426	SRGN	P10124	158 aa		4.21	□□□□□ -1.74
UBR3-208	ENST00000474426	MAN1A1	P33908	653 aa		4.21	□□□□□ -1.74
UBR3-208	ENST00000474426	TSPAN7	P41732	249 aa		4.21	□□□□□ -1.74
UBR3-208	ENST00000474426	SUGP1	Q8IWZ8	645 aa	Known RBP	4.21	□□□□□ -1.74
UBR3-208	ENST00000474426	LDHAL6B	Q9BYZ2	381 aa	Predicted RBP	4.21	□□□□□ -1.74
UBR3-208	ENST00000474426	KIF5C	O60282	957 aa		4.21	□□□□□ -1.74
UBR3-208	ENST00000474426	PPFIA2	O75334	1257 aa		4.21	□□□□□ -1.74
UBR3-208	ENST00000474426	KLHL10	Q6JEL2	608 aa		4.21	□□□□□ -1.74
UBR3-208	ENST00000474426	TRIM74	Q86UV6	250 aa		4.21	□□□□□ -1.74
UBR3-208	ENST00000474426	TRIM73	Q86UV7	250 aa		4.21	□□□□□ -1.74
UBR3-208	ENST00000474426	NLRP13	Q86W25	1043 aa		4.21	□□□□□ -1.74
UBR3-208	ENST00000474426	CHCHD4	Q8N4Q1	142 aa		4.21	□□□□□ -1.74
UBR3-208	ENST00000474426	TSR2	Q969E8	191 aa	Known RBP	4.21	□□□□□ -1.74
UBR3-208	ENST00000474426	AVEN	Q9NQS1	362 aa	Predicted RBP	4.21	□□□□□ -1.74
UBR3-208	ENST00000474426	ACAD8	Q9UKU7	415 aa		4.21	□□□□□ -1.74
UBR3-208	ENST00000474426	ITM2B	Q9Y287	266 aa		4.21	□□□□□ -1.74
UBR3-208	ENST00000474426	N6AMT1	Q9Y5N5	214 aa		4.21	□□□□□ -1.74
UBR3-208	ENST00000474426	COL6A1	P12109	1028 aa		4.2	□□□□□ -1.74
UBR3-208	ENST00000474426	HOXA10	P31260	410 aa	Predicted RBP	4.2	□□□□□ -1.74
UBR3-208	ENST00000474426	SRPK2	P78362	688 aa	Known RBP	4.2	□□□□□ -1.74
UBR3-208	ENST00000474426	MAPRE1	Q15691	268 aa	Known RBP	4.2	□□□□□ -1.74
UBR3-208	ENST00000474426	ZSCAN26	Q16670	478 aa		4.2	□□□□□ -1.74
UBR3-208	ENST00000474426	ALKBH2	Q6NS38	261 aa		4.2	□□□□□ -1.74
UBR3-208	ENST00000474426	GIMAP1	Q8WWP7	306 aa		4.2	□□□□□ -1.74
UBR3-208	ENST00000474426	DDX56	Q9NY93	547 aa	Known RBP	4.2	□□□□□ -1.74
UBR3-208	ENST00000474426	UST	Q9Y2C2	406 aa		4.2	□□□□□ -1.74
UBR3-208	ENST00000474426	COG6	Q9Y2V7	657 aa		4.2	□□□□□ -1.74
UBR3-208	ENST00000474426	RNASEH2A	O75792	299 aa	Known RBP	4.2	□□□□□ -1.74
UBR3-208	ENST00000474426	RGS20	O76081	388 aa		4.2	□□□□□ -1.74
UBR3-208	ENST00000474426	IL4R	P24394	825 aa		4.2	□□□□□ -1.74
UBR3-208	ENST00000474426	WAPL	Q7Z5K2	1190 aa		4.2	□□□□□ -1.74
UBR3-208	ENST00000474426	MNS1	Q8NEH6	495 aa		4.2	□□□□□ -1.74
UBR3-208	ENST00000474426	TDRD7	Q8NHU6	1098 aa	Known RBP	4.2	□□□□□ -1.74
UBR3-208	ENST00000474426	JDP2	Q8WYK2	163 aa		4.2	□□□□□ -1.74
UBR3-208	ENST00000474426	MPHOSPH6	Q99547	160 aa	Known RBP	4.2	□□□□□ -1.74
UBR3-208	ENST00000474426	PRC1	O43663	620 aa		4.2	□□□□□ -1.74
UBR3-208	ENST00000474426	RAPGEF3	O95398	923 aa		4.2	□□□□□ -1.74
UBR3-208	ENST00000474426	VIL1	P09327	827 aa	Known RBP	4.2	□□□□□ -1.74
UBR3-208	ENST00000474426	SMARCA1	P28370	1054 aa		4.2	□□□□□ -1.74
UBR3-208	ENST00000474426	LARP7	Q4G0J3	582 aa	Known RBP eCLIP	4.2	□□□□□ -1.74
UBR3-208	ENST00000474426	GOLGA1	Q92805	767 aa		4.2	□□□□□ -1.74
UBR3-208	ENST00000474426	ERP27	Q96DN0	273 aa		4.2	□□□□□ -1.74

Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms