RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 PHF20L1A8MW92 1017 aa8.98□□□□□ -0.97
CCDC88A-212ENST00000474059 GNRH1P01148 92 aa8.98□□□□□ -0.97
CCDC88A-212ENST00000474059 BRPF1P55201 1214 aaPredicted RBP8.98□□□□□ -0.97
CCDC88A-212ENST00000474059 NEUROD2Q15784 382 aa8.98□□□□□ -0.97
CCDC88A-212ENST00000474059 BEND7Q8N7W2 519 aaPredicted RBP8.98□□□□□ -0.97
CCDC88A-212ENST00000474059 NEDD1Q8NHV4 660 aa8.98□□□□□ -0.97
CCDC88A-212ENST00000474059 GPAMQ9HCL2 828 aa8.98□□□□□ -0.97
CCDC88A-212ENST00000474059 CEP126Q9P2H0 1117 aa8.98□□□□□ -0.97
CCDC88A-212ENST00000474059 NDUFB9Q9Y6M9 179 aa8.98□□□□□ -0.97
CCDC88A-212ENST00000474059 ADAM23O75077 832 aa8.97□□□□□ -0.97
CCDC88A-212ENST00000474059 PHKA2P46019 1235 aa8.97□□□□□ -0.97
CCDC88A-212ENST00000474059 C4orf17Q53FE4 359 aa8.97□□□□□ -0.97
CCDC88A-212ENST00000474059 PHTF2Q8N3S3 785 aa8.97□□□□□ -0.97
CCDC88A-212ENST00000474059 KLRG1Q96E93 195 aa8.97□□□□□ -0.97
CCDC88A-212ENST00000474059 CFHR5Q9BXR6 569 aa8.97□□□□□ -0.97
CCDC88A-212ENST00000474059 OXCT2Q9BYC2 517 aaPredicted RBP8.97□□□□□ -0.97
CCDC88A-212ENST00000474059 HCN2Q9UL51 889 aa8.97□□□□□ -0.97
CCDC88A-212ENST00000474059 C2CD2LO14523 706 aa8.96□□□□□ -0.98
CCDC88A-212ENST00000474059 MSTNO14793 375 aa8.96□□□□□ -0.98
CCDC88A-212ENST00000474059 NDFIP2Q9NV92 336 aa8.96□□□□□ -0.98
CCDC88A-212ENST00000474059 KRBA1A5PL33 1030 aa8.95□□□□□ -0.98
CCDC88A-212ENST00000474059 COL8A1P27658 744 aa8.95□□□□□ -0.98
CCDC88A-212ENST00000474059 MAP2K3P46734 347 aa8.94□□□□□ -0.98
CCDC88A-212ENST00000474059 IRF5Q13568 498 aa8.94□□□□□ -0.98
CCDC88A-212ENST00000474059 A0A1B0GTH6 734 aa8.93□□□□□ -0.98
CCDC88A-212ENST00000474059 ZSCAN10Q96SZ4 725 aaPredicted RBP8.93□□□□□ -0.98
CCDC88A-212ENST00000474059 RUBCNLQ9H714 662 aa8.93□□□□□ -0.98
CCDC88A-212ENST00000474059 ETNK1Q9HBU6 452 aa8.93□□□□□ -0.98
CCDC88A-212ENST00000474059 CHIC2Q9UKJ5 165 aa8.93□□□□□ -0.98
CCDC88A-212ENST00000474059 MSX1P28360 303 aa8.92□□□□□ -0.98
CCDC88A-212ENST00000474059 XP32Q5T750 250 aa8.92□□□□□ -0.98
CCDC88A-212ENST00000474059 PODNQ7Z5L7 613 aa8.92□□□□□ -0.98
CCDC88A-212ENST00000474059 TBC1D2BQ9UPU7 963 aa8.92□□□□□ -0.98
CCDC88A-212ENST00000474059 ZNF295-AS1Q8N0V1 137 aa8.91□□□□□ -0.98
CCDC88A-212ENST00000474059 DNAAF2Q9NVR5 837 aaKnown RBP8.91□□□□□ -0.98
CCDC88A-212ENST00000474059 ZNF330Q9Y3S2 320 aaPredicted RBP8.91□□□□□ -0.98
CCDC88A-212ENST00000474059 BNIP3LO60238 219 aa8.9□□□□□ -0.98
CCDC88A-212ENST00000474059 SCNN1DP51172 638 aa8.9□□□□□ -0.98
CCDC88A-212ENST00000474059 LBRQ14739 615 aaKnown RBP8.9□□□□□ -0.98
CCDC88A-212ENST00000474059 LINC00114Q6XXX2 140 aa8.9□□□□□ -0.98
CCDC88A-212ENST00000474059 GALNT6Q8NCL4 622 aa8.9□□□□□ -0.98
CCDC88A-212ENST00000474059 ZNF592Q92610 1267 aa8.9□□□□□ -0.98
CCDC88A-212ENST00000474059 ABHD17AQ96GS6 310 aa8.9□□□□□ -0.98
CCDC88A-212ENST00000474059 NSFL1CQ9UNZ2 370 aaKnown RBP8.9□□□□□ -0.98
CCDC88A-212ENST00000474059 CTBSQ01459 385 aa8.89□□□□□ -0.99
CCDC88A-212ENST00000474059 PPARGC1BQ86YN6 1023 aaKnown RBP8.89□□□□□ -0.99
CCDC88A-212ENST00000474059 SUV39H2Q9H5I1 410 aa8.89□□□□□ -0.99
CCDC88A-212ENST00000474059 MYCP01106 439 aaPredicted RBP8.88□□□□□ -0.99
CCDC88A-212ENST00000474059 EDARADDQ8WWZ3 215 aa8.88□□□□□ -0.99
CCDC88A-212ENST00000474059 CRISPLD1Q9H336 500 aa8.88□□□□□ -0.99
CCDC88A-212ENST00000474059 ATXN7L1Q9ULK2 861 aaPredicted RBP8.88□□□□□ -0.99
CCDC88A-212ENST00000474059 ATP4AP20648 1035 aa8.87□□□□□ -0.99
CCDC88A-212ENST00000474059 GNASQ5JWF2 1037 aa8.87□□□□□ -0.99
CCDC88A-212ENST00000474059 RHBDD1Q8TEB9 315 aa8.87□□□□□ -0.99
CCDC88A-212ENST00000474059 TMEM214Q6NUQ4 689 aaKnown RBP8.86□□□□□ -0.99
CCDC88A-212ENST00000474059 SLCO4C1Q6ZQN7 724 aa8.86□□□□□ -0.99
CCDC88A-212ENST00000474059 GDF2Q9UK05 429 aaPredicted RBP8.86□□□□□ -0.99
CCDC88A-212ENST00000474059 DOLKQ9UPQ8 538 aa8.86□□□□□ -0.99
CCDC88A-212ENST00000474059 FGFR3P22607 806 aa8.85□□□□□ -0.99
CCDC88A-212ENST00000474059 BAG6P46379 1132 aa8.85□□□□□ -0.99
CCDC88A-212ENST00000474059 GOLGA6L1Q8N7Z2 621 aa8.85□□□□□ -0.99
CCDC88A-212ENST00000474059 GGA1Q9UJY5 639 aa8.85□□□□□ -0.99
CCDC88A-212ENST00000474059 MKL2Q9ULH7 1088 aa8.85□□□□□ -0.99
CCDC88A-212ENST00000474059 PHF24Q9UPV7 400 aa8.85□□□□□ -0.99
CCDC88A-212ENST00000474059 USP3Q9Y6I4 520 aa8.85□□□□□ -0.99
CCDC88A-212ENST00000474059 TLR1Q15399 786 aa8.84□□□□□ -0.99
CCDC88A-212ENST00000474059 ESCO1Q5FWF5 840 aa8.84□□□□□ -0.99
CCDC88A-212ENST00000474059 ESF1Q9H501 851 aaKnown RBP8.84□□□□□ -0.99
CCDC88A-212ENST00000474059 KLF15Q9UIH9 416 aa8.84□□□□□ -0.99
CCDC88A-212ENST00000474059 BMP4P12644 408 aa8.83□□□□□ -1
CCDC88A-212ENST00000474059 PLA2G4AP47712 749 aa8.83□□□□□ -1
CCDC88A-212ENST00000474059 DGKGP49619 791 aa8.83□□□□□ -1
CCDC88A-212ENST00000474059 EPXP11678 715 aa8.82□□□□□ -1
CCDC88A-212ENST00000474059 USP4Q13107 963 aa8.82□□□□□ -1
CCDC88A-212ENST00000474059 OXLD1Q5BKU9 147 aa8.82□□□□□ -1
CCDC88A-212ENST00000474059 EFHC2Q5JST6 749 aa8.82□□□□□ -1
CCDC88A-212ENST00000474059 ZCCHC2Q9C0B9 1178 aaKnown RBP8.82□□□□□ -1
CCDC88A-212ENST00000474059 INHAP05111 366 aa8.81□□□□□ -1
CCDC88A-212ENST00000474059 CSB-PGBD3P0DP91 1061 aa8.81□□□□□ -1
CCDC88A-212ENST00000474059 ITGB7P26010 798 aa8.81□□□□□ -1
CCDC88A-212ENST00000474059 GDF10P55107 478 aa8.81□□□□□ -1
CCDC88A-212ENST00000474059 RNF135Q8IUD6 432 aa8.81□□□□□ -1
CCDC88A-212ENST00000474059 PGBD3Q8N328 593 aa8.81□□□□□ -1
CCDC88A-212ENST00000474059 BTBD6Q96KE9 485 aa8.81□□□□□ -1
CCDC88A-212ENST00000474059 IQSEC3Q9UPP2 1182 aaPredicted RBP8.81□□□□□ -1
CCDC88A-212ENST00000474059 K7ELQ4 463 aaPredicted RBP8.8□□□□□ -1
CCDC88A-212ENST00000474059 APBB1O00213 710 aa8.8□□□□□ -1
CCDC88A-212ENST00000474059 ARAFP10398 606 aa8.8□□□□□ -1
CCDC88A-212ENST00000474059 VAC14Q08AM6 782 aa8.8□□□□□ -1
CCDC88A-212ENST00000474059 TMEM229AB2RXF0 380 aa8.79□□□□□ -1
CCDC88A-212ENST00000474059 EIF4G2P78344 907 aaKnown RBP eCLIP8.79□□□□□ -1
CCDC88A-212ENST00000474059 RRAGCQ9HB90 399 aa8.79□□□□□ -1
CCDC88A-212ENST00000474059 NEURL1BA8MQ27 555 aa8.78□□□□□ -1
CCDC88A-212ENST00000474059 FURINP09958 794 aa8.78□□□□□ -1
CCDC88A-212ENST00000474059 GRIN2CQ14957 1233 aa8.78□□□□□ -1
CCDC88A-212ENST00000474059 SLFNL1Q499Z3 407 aa8.78□□□□□ -1
CCDC88A-212ENST00000474059 TBC1D9Q6ZT07 1266 aa8.78□□□□□ -1
CCDC88A-212ENST00000474059 ALYREFQ86V81 257 aaKnown RBP8.78□□□□□ -1
CCDC88A-212ENST00000474059 FCHSD1Q86WN1 690 aa8.78□□□□□ -1
CCDC88A-212ENST00000474059 PCDHGC4Q9Y5F7 938 aa8.78□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 132.2 ms