RNA–Protein interactions for RNA: ENST00000474056.5

UPF3A-203, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 748 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-203ENST00000474056 AKAP4Q5JQC9 854 aa24.16■■□□□ 1.46
UPF3A-203ENST00000474056 COL23A1Q86Y22 540 aaPredicted RBP24.16■■□□□ 1.46
UPF3A-203ENST00000474056 LINC00116Q8NCU8 138 aa24.15■■□□□ 1.46
UPF3A-203ENST00000474056 HMGB2P26583 209 aaKnown RBP24.14■■□□□ 1.45
UPF3A-203ENST00000474056 ATP6V1AP38606 617 aa24.14■■□□□ 1.45
UPF3A-203ENST00000474056 ITPK1Q13572 414 aa24.14■■□□□ 1.45
UPF3A-203ENST00000474056 MTHFSDQ2M296 383 aaKnown RBP24.14■■□□□ 1.45
UPF3A-203ENST00000474056 MSH5O43196 834 aa24.13■■□□□ 1.45
UPF3A-203ENST00000474056 AMIGO3Q86WK7 504 aa24.13■■□□□ 1.45
UPF3A-203ENST00000474056 AK7Q96M32 723 aa24.13■■□□□ 1.45
UPF3A-203ENST00000474056 CFAP53Q96M91 514 aa24.13■■□□□ 1.45
UPF3A-203ENST00000474056 MRC1P22897 1456 aa24.13■■□□□ 1.45
UPF3A-203ENST00000474056 NFATC2IPQ8NCF5 419 aa24.12■■□□□ 1.45
UPF3A-203ENST00000474056 SLC4A9Q96Q91 983 aa24.12■■□□□ 1.45
UPF3A-203ENST00000474056 MYH14Q7Z406 1995 aaKnown RBP24.12■■□□□ 1.45
UPF3A-203ENST00000474056 ARXQ96QS3 562 aa24.11■■□□□ 1.45
UPF3A-203ENST00000474056 RBM42Q9BTD8 480 aaKnown RBP24.11■■□□□ 1.45
UPF3A-203ENST00000474056 FHDC1Q9C0D6 1143 aaPredicted RBP24.11■■□□□ 1.45
UPF3A-203ENST00000474056 LGR6Q9HBX8 967 aa24.11■■□□□ 1.45
UPF3A-203ENST00000474056 TJP1Q07157 1748 aa24.1■■□□□ 1.45
UPF3A-203ENST00000474056 SMIM5Q71RC9 77 aa24.1■■□□□ 1.45
UPF3A-203ENST00000474056 RNMTO43148 476 aaKnown RBP24.09■■□□□ 1.45
UPF3A-203ENST00000474056 CICQ96RK0 1608 aaPredicted RBP24.09■■□□□ 1.45
UPF3A-203ENST00000474056 PHF14O94880 888 aa24.08■■□□□ 1.45
UPF3A-203ENST00000474056 FLAD1Q8NFF5 587 aa24.08■■□□□ 1.45
UPF3A-203ENST00000474056 SYT17Q9BSW7 474 aa24.08■■□□□ 1.45
UPF3A-203ENST00000474056 POLD1P28340 1107 aa24.07■■□□□ 1.44
UPF3A-203ENST00000474056 MSL1Q68DK7 614 aa24.07■■□□□ 1.44
UPF3A-203ENST00000474056 SLC52A2Q9HAB3 445 aa24.07■■□□□ 1.44
UPF3A-203ENST00000474056 SIPA1L3O60292 1781 aaPredicted RBP24.06■■□□□ 1.44
UPF3A-203ENST00000474056 RSPH6AQ9H0K4 717 aa24.06■■□□□ 1.44
UPF3A-203ENST00000474056 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP24.05■■□□□ 1.44
UPF3A-203ENST00000474056 GNPATO15228 680 aa24.05■■□□□ 1.44
UPF3A-203ENST00000474056 PTCD1O75127 700 aaKnown RBP24.05■■□□□ 1.44
UPF3A-203ENST00000474056 PRKAR2BP31323 418 aa24.05■■□□□ 1.44
UPF3A-203ENST00000474056 NUDCQ9Y266 331 aa24.05■■□□□ 1.44
UPF3A-203ENST00000474056 MAP3K5Q99683 1374 aa24.04■■□□□ 1.44
UPF3A-203ENST00000474056 UBR2Q8IWV8 1755 aa24.04■■□□□ 1.44
UPF3A-203ENST00000474056 SSFA2P28290 1259 aa24.04■■□□□ 1.44
UPF3A-203ENST00000474056 GAS2L2Q8NHY3 880 aa24.03■■□□□ 1.44
UPF3A-203ENST00000474056 C4AP0C0L4 1744 aa24.03■■□□□ 1.44
UPF3A-203ENST00000474056 U2AF1L5P0DN76 240 aaPredicted RBP24.02■■□□□ 1.44
UPF3A-203ENST00000474056 U2AF1Q01081 240 aaKnown RBP eCLIP24.02■■□□□ 1.44
UPF3A-203ENST00000474056 DDX10Q13206 875 aaKnown RBP24.02■■□□□ 1.44
UPF3A-203ENST00000474056 PHACTR3Q96KR7 559 aa24.02■■□□□ 1.44
UPF3A-203ENST00000474056 KCPQ6ZWJ8 1503 aa24.01■■□□□ 1.43
UPF3A-203ENST00000474056 SLC39A6Q13433 755 aa24.01■■□□□ 1.43
UPF3A-203ENST00000474056 KLHL34Q8N239 644 aa24.01■■□□□ 1.43
UPF3A-203ENST00000474056 CNTNAP4Q9C0A0 1308 aa24.01■■□□□ 1.43
UPF3A-203ENST00000474056 DLG5Q8TDM6 1919 aa24■■□□□ 1.43
UPF3A-203ENST00000474056 GNAT3A8MTJ3 354 aa23.99■■□□□ 1.43
UPF3A-203ENST00000474056 RC3H1Q5TC82 1133 aaKnown RBP23.98■■□□□ 1.43
UPF3A-203ENST00000474056 IL17REQ8NFR9 667 aa23.98■■□□□ 1.43
UPF3A-203ENST00000474056 RTCBQ9Y3I0 505 aaKnown RBP23.98■■□□□ 1.43
UPF3A-203ENST00000474056 DCAF8L1A6NGE4 600 aa23.96■■□□□ 1.43
UPF3A-203ENST00000474056 FCHSD2O94868 740 aa23.96■■□□□ 1.43
UPF3A-203ENST00000474056 CRKLP46109 303 aaKnown RBP23.96■■□□□ 1.43
UPF3A-203ENST00000474056 CEMIPQ8WUJ3 1361 aa23.94■■□□□ 1.42
UPF3A-203ENST00000474056 RPS6KA4O75676 772 aa23.94■■□□□ 1.42
UPF3A-203ENST00000474056 TRAPPC3LQ5T215 181 aa23.94■■□□□ 1.42
UPF3A-203ENST00000474056 DNAJC10Q8IXB1 793 aa23.94■■□□□ 1.42
UPF3A-203ENST00000474056 NLGN2Q8NFZ4 835 aa23.94■■□□□ 1.42
UPF3A-203ENST00000474056 CHD4Q14839 1912 aa23.94■■□□□ 1.42
UPF3A-203ENST00000474056 TEFQ10587 303 aa23.93■■□□□ 1.42
UPF3A-203ENST00000474056 ARHGEF1Q92888 912 aaKnown RBP23.93■■□□□ 1.42
UPF3A-203ENST00000474056 UTRNP46939 3433 aa23.93■■□□□ 1.42
UPF3A-203ENST00000474056 ADRA2BP18089 450 aa23.92■■□□□ 1.42
UPF3A-203ENST00000474056 RALBP1Q15311 655 aa23.92■■□□□ 1.42
UPF3A-203ENST00000474056 TTC5Q8N0Z6 440 aa23.9■■□□□ 1.42
UPF3A-203ENST00000474056 INTS5Q6P9B9 1019 aaKnown RBP23.89■■□□□ 1.41
UPF3A-203ENST00000474056 VSIG10Q8N0Z9 540 aa23.88■■□□□ 1.41
UPF3A-203ENST00000474056 KIF13BQ9NQT8 1826 aa23.88■■□□□ 1.41
UPF3A-203ENST00000474056 CYP19A1P11511 503 aaPredicted RBP23.87■■□□□ 1.41
UPF3A-203ENST00000474056 RFC4P35249 363 aa23.87■■□□□ 1.41
UPF3A-203ENST00000474056 ZNF790Q6PG37 636 aa23.87■■□□□ 1.41
UPF3A-203ENST00000474056 MCM10Q7L590 875 aa23.87■■□□□ 1.41
UPF3A-203ENST00000474056 CCDC87Q9NVE4 849 aa23.87■■□□□ 1.41
UPF3A-203ENST00000474056 GYS1P13807 737 aa23.86■■□□□ 1.41
UPF3A-203ENST00000474056 ZEB1P37275 1124 aaPredicted RBP23.86■■□□□ 1.41
UPF3A-203ENST00000474056 RTF1Q92541 710 aaKnown RBP23.86■■□□□ 1.41
UPF3A-203ENST00000474056 PLEKHF1Q96S99 279 aa23.86■■□□□ 1.41
UPF3A-203ENST00000474056 MYBBP1AQ9BQG0 1328 aaKnown RBP23.85■■□□□ 1.41
UPF3A-203ENST00000474056 DCTN1Q14203 1278 aa23.85■■□□□ 1.41
UPF3A-203ENST00000474056 ZNF496Q96IT1 587 aaPredicted RBP23.85■■□□□ 1.41
UPF3A-203ENST00000474056 SRP68Q9UHB9 627 aaKnown RBP23.85■■□□□ 1.41
UPF3A-203ENST00000474056 ZBTB1Q9Y2K1 713 aa23.85■■□□□ 1.41
UPF3A-203ENST00000474056 CD2APQ9Y5K6 639 aa23.85■■□□□ 1.41
UPF3A-203ENST00000474056 HEG1Q9ULI3 1381 aa23.85■■□□□ 1.41
UPF3A-203ENST00000474056 SOS1Q07889 1333 aaPredicted RBP23.84■■□□□ 1.41
UPF3A-203ENST00000474056 BTBD11A6QL63 1104 aa23.84■■□□□ 1.41
UPF3A-203ENST00000474056 MMP10P09238 476 aa23.84■■□□□ 1.41
UPF3A-203ENST00000474056 YY1P25490 414 aa23.84■■□□□ 1.41
UPF3A-203ENST00000474056 GPR162Q16538 588 aa23.84■■□□□ 1.41
UPF3A-203ENST00000474056 KCNQ3O43525 872 aa23.83■■□□□ 1.41
UPF3A-203ENST00000474056 NLGN1Q8N2Q7 840 aa23.83■■□□□ 1.41
UPF3A-203ENST00000474056 KIAA1551Q9HCM1 1747 aa23.83■■□□□ 1.41
UPF3A-203ENST00000474056 GOLGB1Q14789 3259 aaKnown RBP23.83■■□□□ 1.4
UPF3A-203ENST00000474056 USP42Q9H9J4 1324 aaKnown RBP23.83■■□□□ 1.4
UPF3A-203ENST00000474056 NEFMP07197 916 aa23.82■■□□□ 1.4
UPF3A-203ENST00000474056 PELP1Q8IZL8 1130 aaKnown RBP23.82■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms