RNA–Protein interactions for RNA: ENST00000472679.1

CLK1-209, Transcript of CDC like kinase 1, humanhuman

TSL 2

Gene CLK1, Length 461 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-209ENST00000472679 ATP13A2Q9NQ11 1180 aa10.91□□□□□ -0.66
CLK1-209ENST00000472679 UPP2O95045 317 aa10.9□□□□□ -0.66
CLK1-209ENST00000472679 CNKSR1Q969H4 720 aa10.9□□□□□ -0.66
CLK1-209ENST00000472679 ZFP42Q96MM3 310 aa10.9□□□□□ -0.66
CLK1-209ENST00000472679 HRH3Q9Y5N1 445 aa10.9□□□□□ -0.66
CLK1-209ENST00000472679 CARNS1A5YM72 827 aa10.89□□□□□ -0.67
CLK1-209ENST00000472679 WASLO00401 505 aaPredicted RBP10.89□□□□□ -0.67
CLK1-209ENST00000472679 CTSOP43234 321 aaPredicted RBP10.89□□□□□ -0.67
CLK1-209ENST00000472679 SEC13P55735 322 aa10.89□□□□□ -0.67
CLK1-209ENST00000472679 ESCO1Q5FWF5 840 aa10.89□□□□□ -0.67
CLK1-209ENST00000472679 TMEM164Q5U3C3 297 aa10.89□□□□□ -0.67
CLK1-209ENST00000472679 FAM200AQ8TCP9 573 aa10.89□□□□□ -0.67
CLK1-209ENST00000472679 ESYT1Q9BSJ8 1104 aa10.89□□□□□ -0.67
CLK1-209ENST00000472679 LGR5O75473 907 aa10.88□□□□□ -0.67
CLK1-209ENST00000472679 SCARF1Q14162 830 aa10.88□□□□□ -0.67
CLK1-209ENST00000472679 RETREG2Q8NC44 543 aa10.88□□□□□ -0.67
CLK1-209ENST00000472679 CENPCQ03188 943 aa10.87□□□□□ -0.67
CLK1-209ENST00000472679 FOXD4L5Q5VV16 416 aaPredicted RBP10.87□□□□□ -0.67
CLK1-209ENST00000472679 TSEN2Q8NCE0 465 aaKnown RBP10.87□□□□□ -0.67
CLK1-209ENST00000472679 NLRP3Q96P20 1036 aa10.87□□□□□ -0.67
CLK1-209ENST00000472679 POLMQ9NP87 494 aaPredicted RBP10.87□□□□□ -0.67
CLK1-209ENST00000472679 FAM69CQ0P6D2 419 aa10.86□□□□□ -0.67
CLK1-209ENST00000472679 TNS4Q8IZW8 715 aa10.86□□□□□ -0.67
CLK1-209ENST00000472679 SLC4A9Q96Q91 983 aa10.86□□□□□ -0.67
CLK1-209ENST00000472679 FHDC1Q9C0D6 1143 aaPredicted RBP10.86□□□□□ -0.67
CLK1-209ENST00000472679 RBM19Q9Y4C8 960 aaKnown RBP10.86□□□□□ -0.67
CLK1-209ENST00000472679 SOS2Q07890 1332 aaPredicted RBP10.84□□□□□ -0.67
CLK1-209ENST00000472679 TMEM88BA6NKF7 163 aa10.84□□□□□ -0.67
CLK1-209ENST00000472679 BACH1O14867 736 aa10.84□□□□□ -0.67
CLK1-209ENST00000472679 CSB-PGBD3P0DP91 1061 aa10.84□□□□□ -0.67
CLK1-209ENST00000472679 RNF144AP50876 292 aaPredicted RBP10.84□□□□□ -0.67
CLK1-209ENST00000472679 SMTNP53814 917 aa10.84□□□□□ -0.67
CLK1-209ENST00000472679 EPHA4P54764 986 aa10.84□□□□□ -0.67
CLK1-209ENST00000472679 TLR1Q15399 786 aa10.84□□□□□ -0.67
CLK1-209ENST00000472679 GMPR2Q9P2T1 348 aaKnown RBP10.84□□□□□ -0.67
CLK1-209ENST00000472679 USP3Q9Y6I4 520 aa10.84□□□□□ -0.67
CLK1-209ENST00000472679 M0R2N6 131 aa10.83□□□□□ -0.68
CLK1-209ENST00000472679 RNF217Q8TC41 542 aa10.83□□□□□ -0.68
CLK1-209ENST00000472679 SLAIN2Q9P270 581 aa10.83□□□□□ -0.68
CLK1-209ENST00000472679 A6NJY4 79 aa10.82□□□□□ -0.68
CLK1-209ENST00000472679 FIGNL2A6NMB9 653 aa10.82□□□□□ -0.68
CLK1-209ENST00000472679 TTLL8A6PVC2 850 aa10.82□□□□□ -0.68
CLK1-209ENST00000472679 GAS2L2Q8NHY3 880 aa10.82□□□□□ -0.68
CLK1-209ENST00000472679 HINFPQ9BQA5 517 aa10.82□□□□□ -0.68
CLK1-209ENST00000472679 GRIP2Q9C0E4 1043 aa10.82□□□□□ -0.68
CLK1-209ENST00000472679 MTFR1Q15390 333 aa10.81□□□□□ -0.68
CLK1-209ENST00000472679 TBCELQ5QJ74 424 aa10.81□□□□□ -0.68
CLK1-209ENST00000472679 SOBPA7XYQ1 873 aa10.8□□□□□ -0.68
CLK1-209ENST00000472679 POTECB2RU33 542 aa10.8□□□□□ -0.68
CLK1-209ENST00000472679 GPC1P35052 558 aa10.8□□□□□ -0.68
CLK1-209ENST00000472679 FOXK2Q01167 660 aa10.8□□□□□ -0.68
CLK1-209ENST00000472679 SLC27A3Q5K4L6 730 aa10.8□□□□□ -0.68
CLK1-209ENST00000472679 SCHIP1Q9P0W5 487 aaPredicted RBP10.8□□□□□ -0.68
CLK1-209ENST00000472679 DNMT3LQ9UJW3 386 aa10.8□□□□□ -0.68
CLK1-209ENST00000472679 IQSEC3Q9UPP2 1182 aaPredicted RBP10.8□□□□□ -0.68
CLK1-209ENST00000472679 ZSCAN10Q96SZ4 725 aaPredicted RBP10.79□□□□□ -0.68
CLK1-209ENST00000472679 TSPAN10Q9H1Z9 355 aaPredicted RBP10.79□□□□□ -0.68
CLK1-209ENST00000472679 CDK2AP1O14519 115 aa10.78□□□□□ -0.68
CLK1-209ENST00000472679 PRICKLE2Q7Z3G6 844 aa10.78□□□□□ -0.68
CLK1-209ENST00000472679 PRIMPOLQ96LW4 560 aa10.78□□□□□ -0.68
CLK1-209ENST00000472679 C21orf2O43822 256 aa10.77□□□□□ -0.69
CLK1-209ENST00000472679 SNRPBP14678 240 aaKnown RBP10.77□□□□□ -0.69
CLK1-209ENST00000472679 SWI5Q1ZZU3 235 aa10.77□□□□□ -0.69
CLK1-209ENST00000472679 TMEM214Q6NUQ4 689 aaKnown RBP10.77□□□□□ -0.69
CLK1-209ENST00000472679 PPARGC1BQ86YN6 1023 aaKnown RBP10.77□□□□□ -0.69
CLK1-209ENST00000472679 SLC9A9Q8IVB4 645 aa10.77□□□□□ -0.69
CLK1-209ENST00000472679 ZNF295-AS1Q8N0V1 137 aa10.77□□□□□ -0.69
CLK1-209ENST00000472679 TRIM47Q96LD4 638 aa10.77□□□□□ -0.69
CLK1-209ENST00000472679 USTQ9Y2C2 406 aa10.77□□□□□ -0.69
CLK1-209ENST00000472679 PRMT3O60678 531 aa10.76□□□□□ -0.69
CLK1-209ENST00000472679 POU4F2Q12837 409 aa10.76□□□□□ -0.69
CLK1-209ENST00000472679 CLP1Q92989 425 aaKnown RBP10.76□□□□□ -0.69
CLK1-209ENST00000472679 SENP2Q9HC62 589 aa10.76□□□□□ -0.69
CLK1-209ENST00000472679 MAN1A2O60476 641 aa10.75□□□□□ -0.69
CLK1-209ENST00000472679 RHOQP17081 205 aa10.75□□□□□ -0.69
CLK1-209ENST00000472679 LYSMD3Q7Z3D4 306 aa10.75□□□□□ -0.69
CLK1-209ENST00000472679 SCG3Q8WXD2 468 aaKnown RBP10.75□□□□□ -0.69
CLK1-209ENST00000472679 WEE1P30291 646 aa10.74□□□□□ -0.69
CLK1-209ENST00000472679 OCLNQ16625 522 aa10.74□□□□□ -0.69
CLK1-209ENST00000472679 C4orf17Q53FE4 359 aa10.74□□□□□ -0.69
CLK1-209ENST00000472679 KIFC2Q96AC6 838 aa10.74□□□□□ -0.69
CLK1-209ENST00000472679 ATAD2Q6PL18 1390 aa10.74□□□□□ -0.69
CLK1-209ENST00000472679 SPATA31C2B4DYI2 1134 aa10.73□□□□□ -0.69
CLK1-209ENST00000472679 PHKA2P46019 1235 aa10.73□□□□□ -0.69
CLK1-209ENST00000472679 NBPF10Q6P3W6 841 aaKnown RBP10.73□□□□□ -0.69
CLK1-209ENST00000472679 NBPF15Q8N660 670 aa10.73□□□□□ -0.69
CLK1-209ENST00000472679 RHBDD1Q8TEB9 315 aa10.73□□□□□ -0.69
CLK1-209ENST00000472679 ZDHHC1Q8WTX9 485 aa10.73□□□□□ -0.69
CLK1-209ENST00000472679 PARP3Q9Y6F1 533 aa10.73□□□□□ -0.69
CLK1-209ENST00000472679 C11orf95C9JLR9 678 aaPredicted RBP10.72□□□□□ -0.69
CLK1-209ENST00000472679 GNASQ5JWF2 1037 aa10.72□□□□□ -0.69
CLK1-209ENST00000472679 SH3PXD2AQ5TCZ1 1133 aa10.72□□□□□ -0.69
CLK1-209ENST00000472679 CABP1Q9NZU7 370 aa10.72□□□□□ -0.69
CLK1-209ENST00000472679 PPP1R12BO60237 982 aaPredicted RBP10.71□□□□□ -0.69
CLK1-209ENST00000472679 IGFBP4P22692 258 aa10.71□□□□□ -0.69
CLK1-209ENST00000472679 ATP2B4P23634 1241 aa10.71□□□□□ -0.69
CLK1-209ENST00000472679 GTF2E1P29083 439 aaPredicted RBP10.71□□□□□ -0.69
CLK1-209ENST00000472679 ZNF800Q2TB10 664 aaPredicted RBP eCLIP10.71□□□□□ -0.692e-6■■□□□ 13.3
CLK1-209ENST00000472679 TAS1R3Q7RTX0 852 aa10.71□□□□□ -0.69
CLK1-209ENST00000472679 CHMP7Q8WUX9 453 aaPredicted RBP10.71□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms