RNA–Protein interactions for RNA: ENST00000472398.5

TTC3-214, Transcript of tetratricopeptide repeat domain 3, human

TSL 1 (best)

Gene TTC3, Length 2,305 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TTC3-214	ENST00000472398	MUC3B	Q9H195	1237 aa		4.1	□□□□□ -1.75
TTC3-214	ENST00000472398	GIGYF1	O75420	1035 aa	Predicted RBP	4.1	□□□□□ -1.75
TTC3-214	ENST00000472398	IGHD	P01880	384 aa		4.1	□□□□□ -1.75
TTC3-214	ENST00000472398	RGS3	P49796	1198 aa		4.1	□□□□□ -1.75
TTC3-214	ENST00000472398	POU5F1	Q01860	360 aa	Known RBP	4.1	□□□□□ -1.75
TTC3-214	ENST00000472398	RAD51AP2	Q09MP3	1159 aa		4.1	□□□□□ -1.75
TTC3-214	ENST00000472398	DIXDC1	Q155Q3	683 aa		4.1	□□□□□ -1.75
TTC3-214	ENST00000472398	TTC39B	Q5VTQ0	682 aa	Predicted RBP	4.1	□□□□□ -1.75
TTC3-214	ENST00000472398	PAGR1	Q9BTK6	254 aa		4.1	□□□□□ -1.75
TTC3-214	ENST00000472398	BEGAIN	Q9BUH8	593 aa		4.1	□□□□□ -1.75
TTC3-214	ENST00000472398	PCDH12	Q9NPG4	1184 aa		4.1	□□□□□ -1.75
TTC3-214	ENST00000472398	SFMBT1	Q9UHJ3	866 aa		4.1	□□□□□ -1.75
TTC3-214	ENST00000472398	FAM205C	A6NFA0	338 aa		4.09	□□□□□ -1.75
TTC3-214	ENST00000472398	TCERG1	O14776	1098 aa	Known RBP	4.09	□□□□□ -1.75
TTC3-214	ENST00000472398	VAMP1	P23763	118 aa		4.09	□□□□□ -1.75
TTC3-214	ENST00000472398	TERF1	P54274	439 aa		4.09	□□□□□ -1.75
TTC3-214	ENST00000472398	DHX8	Q14562	1220 aa	Known RBP	4.09	□□□□□ -1.75
TTC3-214	ENST00000472398	FAM98C	Q17RN3	349 aa	Known RBP	4.09	□□□□□ -1.75
TTC3-214	ENST00000472398	PHLDB3	Q6NSJ2	640 aa		4.09	□□□□□ -1.75
TTC3-214	ENST00000472398	NT5DC4	Q86YG4	428 aa		4.09	□□□□□ -1.75
TTC3-214	ENST00000472398	RAVER1	Q8IY67	606 aa	Known RBP	4.09	□□□□□ -1.75
TTC3-214	ENST00000472398	ZCRB1	Q8TBF4	217 aa	Known RBP	4.09	□□□□□ -1.75
TTC3-214	ENST00000472398	NLRP7	Q8WX94	980 aa		4.09	□□□□□ -1.75
TTC3-214	ENST00000472398	PIK3R5	Q8WYR1	880 aa		4.09	□□□□□ -1.75
TTC3-214	ENST00000472398	TRIM44	Q96DX7	344 aa	Predicted RBP	4.09	□□□□□ -1.75
TTC3-214	ENST00000472398	SPC25	Q9HBM1	224 aa		4.09	□□□□□ -1.75
TTC3-214	ENST00000472398	CHST12	Q9NRB3	414 aa		4.09	□□□□□ -1.75
TTC3-214	ENST00000472398	DIS3	Q9Y2L1	958 aa	Known RBP	4.09	□□□□□ -1.75
TTC3-214	ENST00000472398	MRPL42	Q9Y6G3	142 aa	Known RBP	4.09	□□□□□ -1.75
TTC3-214	ENST00000472398	FAM200B	P0CF97	657 aa		4.09	□□□□□ -1.76
TTC3-214	ENST00000472398	LONRF1	Q17RB8	773 aa		4.09	□□□□□ -1.76
TTC3-214	ENST00000472398	HSP90AB3P	Q58FF7	597 aa		4.09	□□□□□ -1.76
TTC3-214	ENST00000472398	C1QTNF12	Q5T7M4	302 aa		4.09	□□□□□ -1.76
TTC3-214	ENST00000472398	TREML4	Q6UXN2	200 aa		4.09	□□□□□ -1.76
TTC3-214	ENST00000472398	NYAP1	Q6ZVC0	841 aa		4.09	□□□□□ -1.76
TTC3-214	ENST00000472398	BSDC1	Q9NW68	430 aa	Predicted RBP	4.09	□□□□□ -1.76
TTC3-214	ENST00000472398	CEP126	Q9P2H0	1117 aa		4.09	□□□□□ -1.76
TTC3-214	ENST00000472398	FEZ2	Q9UHY8	353 aa	Predicted RBP	4.09	□□□□□ -1.76
TTC3-214	ENST00000472398	TBC1D2B	Q9UPU7	963 aa		4.09	□□□□□ -1.76
TTC3-214	ENST00000472398	SPDYE5	A6NIY4	337 aa		4.08	□□□□□ -1.76
TTC3-214	ENST00000472398	VGLL3	A8MV65	326 aa		4.08	□□□□□ -1.76
TTC3-214	ENST00000472398	HR	O43593	1189 aa		4.08	□□□□□ -1.76
TTC3-214	ENST00000472398	HDLBP	Q00341	1268 aa	Known RBP	4.08	□□□□□ -1.76
TTC3-214	ENST00000472398	RASSF7	Q02833	373 aa		4.08	□□□□□ -1.76
TTC3-214	ENST00000472398	MYSM1	Q5VVJ2	828 aa		4.08	□□□□□ -1.76
TTC3-214	ENST00000472398	JDP2	Q8WYK2	163 aa		4.08	□□□□□ -1.76
TTC3-214	ENST00000472398	TSR2	Q969E8	191 aa	Known RBP	4.08	□□□□□ -1.76
TTC3-214	ENST00000472398	CEP63	Q96MT8	703 aa		4.08	□□□□□ -1.76
TTC3-214	ENST00000472398	TINF2	Q9BSI4	451 aa		4.08	□□□□□ -1.76
TTC3-214	ENST00000472398	RSPH9	Q9H1X1	276 aa	Predicted RBP	4.08	□□□□□ -1.76
TTC3-214	ENST00000472398	IFT57	Q9NWB7	429 aa		4.08	□□□□□ -1.76
TTC3-214	ENST00000472398	CUEDC1	Q9NWM3	386 aa	Predicted RBP	4.08	□□□□□ -1.76
TTC3-214	ENST00000472398	TTF2	Q9UNY4	1162 aa	Known RBP	4.08	□□□□□ -1.76
TTC3-214	ENST00000472398	SCIN	Q9Y6U3	715 aa		4.08	□□□□□ -1.76
TTC3-214	ENST00000472398	ANKRD33B	A6NCL7	494 aa		4.07	□□□□□ -1.76
TTC3-214	ENST00000472398	ATG7	O95352	703 aa		4.07	□□□□□ -1.76
TTC3-214	ENST00000472398	GTF2F1	P35269	517 aa	Known RBP eCLIP	4.07	□□□□□ -1.76
TTC3-214	ENST00000472398	USP5	P45974	858 aa		4.07	□□□□□ -1.76
TTC3-214	ENST00000472398	LSM11	P83369	360 aa	Known RBP eCLIP	4.07	□□□□□ -1.76
TTC3-214	ENST00000472398	PCGF5	Q86SE9	256 aa		4.07	□□□□□ -1.76
TTC3-214	ENST00000472398	PPARGC1B	Q86YN6	1023 aa	Known RBP	4.07	□□□□□ -1.76
TTC3-214	ENST00000472398	NGEF	Q8N5V2	710 aa		4.07	□□□□□ -1.76
TTC3-214	ENST00000472398	NGDN	Q8NEJ9	315 aa	Known RBP	4.07	□□□□□ -1.76
TTC3-214	ENST00000472398	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	4.07	□□□□□ -1.76
TTC3-214	ENST00000472398	BACH2	Q9BYV9	841 aa		4.07	□□□□□ -1.76
TTC3-214	ENST00000472398	NBPF3	Q9H094	633 aa		4.07	□□□□□ -1.76
TTC3-214	ENST00000472398	DDX56	Q9NY93	547 aa	Known RBP	4.07	□□□□□ -1.76
TTC3-214	ENST00000472398	AXIN2	Q9Y2T1	843 aa		4.07	□□□□□ -1.76
TTC3-214	ENST00000472398	SPTLC1	O15269	473 aa		4.07	□□□□□ -1.76
TTC3-214	ENST00000472398	S100B	P04271	92 aa	Predicted RBP	4.07	□□□□□ -1.76
TTC3-214	ENST00000472398	LDHC	P07864	332 aa		4.07	□□□□□ -1.76
TTC3-214	ENST00000472398	CD53	P19397	219 aa		4.07	□□□□□ -1.76
TTC3-214	ENST00000472398	XPC	Q01831	940 aa	Predicted RBP	4.07	□□□□□ -1.76
TTC3-214	ENST00000472398	CALD1	Q05682	793 aa	Known RBP	4.07	□□□□□ -1.76
TTC3-214	ENST00000472398	SF3B2	Q13435	895 aa	Known RBP	4.07	□□□□□ -1.76
TTC3-214	ENST00000472398	LDLRAD1	Q5T700	205 aa		4.07	□□□□□ -1.76
TTC3-214	ENST00000472398	IFFO2	Q5TF58	517 aa		4.07	□□□□□ -1.76
TTC3-214	ENST00000472398	EFCAB2	Q5VUJ9	269 aa		4.07	□□□□□ -1.76
TTC3-214	ENST00000472398	NBPF10	Q6P3W6	841 aa	Known RBP	4.07	□□□□□ -1.76
TTC3-214	ENST00000472398	SKAP1	Q86WV1	359 aa		4.07	□□□□□ -1.76
TTC3-214	ENST00000472398	CCAR1	Q8IX12	1150 aa	Known RBP	4.07	□□□□□ -1.76
TTC3-214	ENST00000472398	SPIRE2	Q8WWL2	714 aa		4.07	□□□□□ -1.76
TTC3-214	ENST00000472398	RSPH1	Q8WYR4	309 aa		4.07	□□□□□ -1.76
TTC3-214	ENST00000472398	MPHOSPH6	Q99547	160 aa	Known RBP	4.07	□□□□□ -1.76
TTC3-214	ENST00000472398	ZSWIM4	Q9H7M6	989 aa		4.07	□□□□□ -1.76
TTC3-214	ENST00000472398	PRKAG2	Q9UGJ0	569 aa		4.07	□□□□□ -1.76
TTC3-214	ENST00000472398	THRAP3	Q9Y2W1	955 aa	Known RBP	4.07	□□□□□ -1.76
TTC3-214	ENST00000472398	SMAP	O00193	183 aa		4.06	□□□□□ -1.76
TTC3-214	ENST00000472398	GCGR	P47871	477 aa		4.06	□□□□□ -1.76
TTC3-214	ENST00000472398	USP46	P62068	366 aa		4.06	□□□□□ -1.76
TTC3-214	ENST00000472398	CBLB	Q13191	982 aa		4.06	□□□□□ -1.76
TTC3-214	ENST00000472398	DUSP27	Q5VZP5	1158 aa		4.06	□□□□□ -1.76
TTC3-214	ENST00000472398	KANK3	Q6NY19	840 aa		4.06	□□□□□ -1.76
TTC3-214	ENST00000472398	PDILT	Q8N807	584 aa		4.06	□□□□□ -1.76
TTC3-214	ENST00000472398	PMFBP1	Q8TBY8	1022 aa		4.06	□□□□□ -1.76
TTC3-214	ENST00000472398	ANP32B	Q92688	251 aa	Known RBP	4.06	□□□□□ -1.76
TTC3-214	ENST00000472398	SEZ6L	Q9BYH1	1024 aa		4.06	□□□□□ -1.76
TTC3-214	ENST00000472398	PRC1	O43663	620 aa		4.06	□□□□□ -1.76
TTC3-214	ENST00000472398	SLC10A3	P09131	477 aa		4.06	□□□□□ -1.76
TTC3-214	ENST00000472398	VDR	P11473	427 aa		4.06	□□□□□ -1.76

Retrieved 100 of 20,778 RNA–protein pairs in 120.1 ms