RNA–Protein interactions for RNA: ENST00000471880.5

SSR4-208, Transcript of signal sequence receptor subunit 4, human

TSL 5

Gene SSR4, Length 785 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SSR4-208	ENST00000471880	AKAP4	Q5JQC9	854 aa		19.83	■□□□□ 0.77
SSR4-208	ENST00000471880	AK7	Q96M32	723 aa		19.83	■□□□□ 0.77
SSR4-208	ENST00000471880	ADAMTS7	Q9UKP4	1686 aa		19.82	■□□□□ 0.76
SSR4-208	ENST00000471880	U2AF1L5	P0DN76	240 aa	Predicted RBP	19.82	■□□□□ 0.76
SSR4-208	ENST00000471880	ATP6V1A	P38606	617 aa		19.82	■□□□□ 0.76
SSR4-208	ENST00000471880	U2AF1	Q01081	240 aa	Known RBP eCLIP	19.82	■□□□□ 0.76
SSR4-208	ENST00000471880	MTHFSD	Q2M296	383 aa	Known RBP	19.82	■□□□□ 0.76
SSR4-208	ENST00000471880	MTFR1L	Q9H019	292 aa		19.82	■□□□□ 0.76
SSR4-208	ENST00000471880	MYH14	Q7Z406	1995 aa	Known RBP	19.82	■□□□□ 0.76
SSR4-208	ENST00000471880	LOC102724428	A0A0B4J2F2	783 aa		19.81	■□□□□ 0.76
SSR4-208	ENST00000471880	SIK1	P57059	783 aa		19.81	■□□□□ 0.76
SSR4-208	ENST00000471880	SMIM5	Q71RC9	77 aa		19.81	■□□□□ 0.76
SSR4-208	ENST00000471880	ATG3	Q9NT62	314 aa		19.81	■□□□□ 0.76
SSR4-208	ENST00000471880	ZNF831	Q5JPB2	1677 aa		19.81	■□□□□ 0.76
SSR4-208	ENST00000471880	HMGB2	P26583	209 aa	Known RBP	19.8	■□□□□ 0.76
SSR4-208	ENST00000471880	NFATC2IP	Q8NCF5	419 aa		19.8	■□□□□ 0.76
SSR4-208	ENST00000471880	PHF14	O94880	888 aa		19.79	■□□□□ 0.76
SSR4-208	ENST00000471880	PRKAR2B	P31323	418 aa		19.79	■□□□□ 0.76
SSR4-208	ENST00000471880	ITPK1	Q13572	414 aa		19.79	■□□□□ 0.76
SSR4-208	ENST00000471880	COL23A1	Q86Y22	540 aa	Predicted RBP	19.79	■□□□□ 0.76
SSR4-208	ENST00000471880	KLHL34	Q8N239	644 aa		19.79	■□□□□ 0.76
SSR4-208	ENST00000471880	SLC4A9	Q96Q91	983 aa		19.79	■□□□□ 0.76
SSR4-208	ENST00000471880	TJP1	Q07157	1748 aa		19.79	■□□□□ 0.76
SSR4-208	ENST00000471880	PTCD1	O75127	700 aa	Known RBP	19.78	■□□□□ 0.76
SSR4-208	ENST00000471880	LINC00116	Q8NCU8	138 aa		19.78	■□□□□ 0.76
SSR4-208	ENST00000471880	LGR6	Q9HBX8	967 aa		19.78	■□□□□ 0.76
SSR4-208	ENST00000471880	RNMT	O43148	476 aa	Known RBP	19.76	■□□□□ 0.75
SSR4-208	ENST00000471880	GAS2L2	Q8NHY3	880 aa		19.76	■□□□□ 0.75
SSR4-208	ENST00000471880	SIPA1L3	O60292	1781 aa	Predicted RBP	19.75	■□□□□ 0.75
SSR4-208	ENST00000471880	NEFM	P07197	916 aa		19.75	■□□□□ 0.75
SSR4-208	ENST00000471880	POLD1	P28340	1107 aa		19.75	■□□□□ 0.75
SSR4-208	ENST00000471880	MSL1	Q68DK7	614 aa		19.75	■□□□□ 0.75
SSR4-208	ENST00000471880	MRC1	P22897	1456 aa		19.74	■□□□□ 0.75
SSR4-208	ENST00000471880	GNPAT	O15228	680 aa		19.74	■□□□□ 0.75
SSR4-208	ENST00000471880	SLC16A10	Q8TF71	515 aa		19.74	■□□□□ 0.75
SSR4-208	ENST00000471880	FHDC1	Q9C0D6	1143 aa	Predicted RBP	19.74	■□□□□ 0.75
SSR4-208	ENST00000471880	RSPH6A	Q9H0K4	717 aa		19.74	■□□□□ 0.75
SSR4-208	ENST00000471880	SLC52A2	Q9HAB3	445 aa		19.74	■□□□□ 0.75
SSR4-208	ENST00000471880	CIC	Q96RK0	1608 aa	Predicted RBP	19.73	■□□□□ 0.75
SSR4-208	ENST00000471880	MAP3K5	Q99683	1374 aa		19.73	■□□□□ 0.75
SSR4-208	ENST00000471880	GNAT3	A8MTJ3	354 aa		19.73	■□□□□ 0.75
SSR4-208	ENST00000471880	RALBP1	Q15311	655 aa		19.73	■□□□□ 0.75
SSR4-208	ENST00000471880	C4A	P0C0L4	1744 aa		19.73	■□□□□ 0.75
SSR4-208	ENST00000471880	UBR2	Q8IWV8	1755 aa		19.72	■□□□□ 0.75
SSR4-208	ENST00000471880	TEF	Q10587	303 aa		19.72	■□□□□ 0.75
SSR4-208	ENST00000471880	FLAD1	Q8NFF5	587 aa		19.72	■□□□□ 0.75
SSR4-208	ENST00000471880	PHACTR3	Q96KR7	559 aa		19.72	■□□□□ 0.75
SSR4-208	ENST00000471880	ARX	Q96QS3	562 aa		19.72	■□□□□ 0.75
SSR4-208	ENST00000471880	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	19.71	■□□□□ 0.75
SSR4-208	ENST00000471880	DCAF8L1	A6NGE4	600 aa		19.71	■□□□□ 0.75
SSR4-208	ENST00000471880	SLC39A6	Q13433	755 aa		19.71	■□□□□ 0.75
SSR4-208	ENST00000471880	SYT17	Q9BSW7	474 aa		19.71	■□□□□ 0.75
SSR4-208	ENST00000471880	DLG5	Q8TDM6	1919 aa		19.7	■□□□□ 0.74
SSR4-208	ENST00000471880	FCHSD2	O94868	740 aa		19.69	■□□□□ 0.74
SSR4-208	ENST00000471880	TTC5	Q8N0Z6	440 aa		19.69	■□□□□ 0.74
SSR4-208	ENST00000471880	RTF1	Q92541	710 aa	Known RBP	19.69	■□□□□ 0.74
SSR4-208	ENST00000471880	KCP	Q6ZWJ8	1503 aa		19.68	■□□□□ 0.74
SSR4-208	ENST00000471880	RTCB	Q9Y3I0	505 aa	Known RBP	19.68	■□□□□ 0.74
SSR4-208	ENST00000471880	SSFA2	P28290	1259 aa		19.67	■□□□□ 0.74
SSR4-208	ENST00000471880	MYBBP1A	Q9BQG0	1328 aa	Known RBP	19.67	■□□□□ 0.74
SSR4-208	ENST00000471880	MAPK8IP3	Q9UPT6	1336 aa		19.66	■□□□□ 0.74
SSR4-208	ENST00000471880	IL17RE	Q8NFR9	667 aa		19.65	■□□□□ 0.74
SSR4-208	ENST00000471880	TRAPPC3L	Q5T215	181 aa		19.64	■□□□□ 0.73
SSR4-208	ENST00000471880	MCM10	Q7L590	875 aa		19.64	■□□□□ 0.73
SSR4-208	ENST00000471880	DNAJC10	Q8IXB1	793 aa		19.64	■□□□□ 0.73
SSR4-208	ENST00000471880	CHD4	Q14839	1912 aa		19.64	■□□□□ 0.73
SSR4-208	ENST00000471880	CRKL	P46109	303 aa	Known RBP	19.63	■□□□□ 0.73
SSR4-208	ENST00000471880	NLGN2	Q8NFZ4	835 aa		19.63	■□□□□ 0.73
SSR4-208	ENST00000471880	PNN	Q9H307	717 aa	Known RBP	19.63	■□□□□ 0.73
SSR4-208	ENST00000471880	CNTNAP4	Q9C0A0	1308 aa		19.62	■□□□□ 0.73
SSR4-208	ENST00000471880	BTBD11	A6QL63	1104 aa		19.62	■□□□□ 0.73
SSR4-208	ENST00000471880	RFC4	P35249	363 aa		19.62	■□□□□ 0.73
SSR4-208	ENST00000471880	DCTN1	Q14203	1278 aa		19.62	■□□□□ 0.73
SSR4-208	ENST00000471880	PELP1	Q8IZL8	1130 aa	Known RBP	19.62	■□□□□ 0.73
SSR4-208	ENST00000471880	WDR43	Q15061	677 aa	Known RBP eCLIP	19.61	■□□□□ 0.73
SSR4-208	ENST00000471880	RC3H1	Q5TC82	1133 aa	Known RBP	19.61	■□□□□ 0.73
SSR4-208	ENST00000471880	KIAA1551	Q9HCM1	1747 aa		19.6	■□□□□ 0.73
SSR4-208	ENST00000471880	ZNF316	A6NFI3	1004 aa	Predicted RBP	19.6	■□□□□ 0.73
SSR4-208	ENST00000471880	RPS6KA4	O75676	772 aa		19.6	■□□□□ 0.73
SSR4-208	ENST00000471880	UTRN	P46939	3433 aa		19.6	■□□□□ 0.73
SSR4-208	ENST00000471880	KIF13B	Q9NQT8	1826 aa		19.6	■□□□□ 0.73
SSR4-208	ENST00000471880	ARHGEF1	Q92888	912 aa	Known RBP	19.59	■□□□□ 0.73
SSR4-208	ENST00000471880	CCDC87	Q9NVE4	849 aa		19.59	■□□□□ 0.73
SSR4-208	ENST00000471880	GOLGB1	Q14789	3259 aa	Known RBP	19.58	■□□□□ 0.73
SSR4-208	ENST00000471880	ZNF790	Q6PG37	636 aa		19.58	■□□□□ 0.72
SSR4-208	ENST00000471880	PRKRIP1	Q9H875	184 aa	Predicted RBP	19.58	■□□□□ 0.72
SSR4-208	ENST00000471880	ZNF330	Q9Y3S2	320 aa	Predicted RBP	19.58	■□□□□ 0.72
SSR4-208	ENST00000471880	CEMIP	Q8WUJ3	1361 aa		19.57	■□□□□ 0.72
SSR4-208	ENST00000471880	ADRA2B	P18089	450 aa		19.57	■□□□□ 0.72
SSR4-208	ENST00000471880	INTS5	Q6P9B9	1019 aa	Known RBP	19.57	■□□□□ 0.72
SSR4-208	ENST00000471880	ZNF496	Q96IT1	587 aa	Predicted RBP	19.57	■□□□□ 0.72
SSR4-208	ENST00000471880	CANX	P27824	592 aa	Known RBP	19.56	■□□□□ 0.72
SSR4-208	ENST00000471880	NFE2L2	Q16236	605 aa		19.56	■□□□□ 0.72
SSR4-208	ENST00000471880	CCDC146	Q8IYE0	955 aa		19.56	■□□□□ 0.72
SSR4-208	ENST00000471880	FMNL2	Q96PY5	1086 aa		19.56	■□□□□ 0.72
SSR4-208	ENST00000471880	N4BP2	Q86UW6	1770 aa	Predicted RBP	19.55	■□□□□ 0.72
SSR4-208	ENST00000471880	KCNQ3	O43525	872 aa		19.55	■□□□□ 0.72
SSR4-208	ENST00000471880	STARD3NL	O95772	234 aa		19.55	■□□□□ 0.72
SSR4-208	ENST00000471880	CYP19A1	P11511	503 aa	Predicted RBP	19.55	■□□□□ 0.72
SSR4-208	ENST00000471880	GPR162	Q16538	588 aa		19.55	■□□□□ 0.72

Retrieved 100 of 20,778 RNA–protein pairs in 44 ms