RNA–Protein interactions for RNA: ENST00000471439.1

VPS13A-210, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-210ENST00000471439 IRF7Q92985 503 aa7.87□□□□□ -1.15
VPS13A-210ENST00000471439 ETNK1Q9HBU6 452 aa7.87□□□□□ -1.15
VPS13A-210ENST00000471439 SKIP12755 728 aa7.86□□□□□ -1.15
VPS13A-210ENST00000471439 SOX11P35716 441 aa7.86□□□□□ -1.15
VPS13A-210ENST00000471439 FAM69CQ0P6D2 419 aa7.86□□□□□ -1.15
VPS13A-210ENST00000471439 DEPDC4Q8N2C3 294 aa7.86□□□□□ -1.15
VPS13A-210ENST00000471439 GPR161Q8N6U8 529 aaKnown RBP7.86□□□□□ -1.15
VPS13A-210ENST00000471439 CUEDC1Q9NWM3 386 aaPredicted RBP7.86□□□□□ -1.15
VPS13A-210ENST00000471439 VSIG8P0DPA2 414 aa7.85□□□□□ -1.15
VPS13A-210ENST00000471439 SCNN1DP51172 638 aa7.85□□□□□ -1.15
VPS13A-210ENST00000471439 SLC27A3Q5K4L6 730 aa7.85□□□□□ -1.15
VPS13A-210ENST00000471439 CNKSR1Q969H4 720 aa7.85□□□□□ -1.15
VPS13A-210ENST00000471439 NLRP3Q96P20 1036 aa7.85□□□□□ -1.15
VPS13A-210ENST00000471439 ESF1Q9H501 851 aaKnown RBP7.85□□□□□ -1.15
VPS13A-210ENST00000471439 HRH3Q9Y5N1 445 aa7.85□□□□□ -1.15
VPS13A-210ENST00000471439 IFT140Q96RY7 1462 aa7.85□□□□□ -1.15
VPS13A-210ENST00000471439 TSPOAP1O95153 1857 aa7.85□□□□□ -1.15
VPS13A-210ENST00000471439 GNRH1P01148 92 aa7.84□□□□□ -1.15
VPS13A-210ENST00000471439 KRT76Q01546 638 aa7.84□□□□□ -1.15
VPS13A-210ENST00000471439 POU4F2Q12837 409 aa7.84□□□□□ -1.15
VPS13A-210ENST00000471439 NCOA4Q13772 614 aa7.84□□□□□ -1.15
VPS13A-210ENST00000471439 HDGFL1Q5TGJ6 251 aa7.84□□□□□ -1.15
VPS13A-210ENST00000471439 WWC1Q8IX03 1113 aa7.84□□□□□ -1.15
VPS13A-210ENST00000471439 GRIP2Q9C0E4 1043 aa7.84□□□□□ -1.15
VPS13A-210ENST00000471439 ITGA6P23229 1130 aa7.83□□□□□ -1.16
VPS13A-210ENST00000471439 USP4Q13107 963 aa7.83□□□□□ -1.16
VPS13A-210ENST00000471439 TBC1D9Q6ZT07 1266 aa7.83□□□□□ -1.16
VPS13A-210ENST00000471439 ESYT1Q9BSJ8 1104 aa7.83□□□□□ -1.16
VPS13A-210ENST00000471439 FHDC1Q9C0D6 1143 aaPredicted RBP7.83□□□□□ -1.16
VPS13A-210ENST00000471439 CDC14CA4D256 554 aa7.82□□□□□ -1.16
VPS13A-210ENST00000471439 USP17L5A8MUK1 530 aa7.82□□□□□ -1.16
VPS13A-210ENST00000471439 LORP23490 312 aaPredicted RBP7.82□□□□□ -1.16
VPS13A-210ENST00000471439 GPC1P35052 558 aa7.82□□□□□ -1.16
VPS13A-210ENST00000471439 INSM1Q01101 510 aaPredicted RBP7.82□□□□□ -1.16
VPS13A-210ENST00000471439 CENPCQ03188 943 aa7.82□□□□□ -1.16
VPS13A-210ENST00000471439 GLMNQ92990 594 aa7.82□□□□□ -1.16
VPS13A-210ENST00000471439 PHKA2P46019 1235 aa7.81□□□□□ -1.16
VPS13A-210ENST00000471439 MAP7D1Q3KQU3 841 aa7.81□□□□□ -1.16
VPS13A-210ENST00000471439 RNFT1Q5M7Z0 435 aa7.81□□□□□ -1.16
VPS13A-210ENST00000471439 NBPF10Q6P3W6 841 aaKnown RBP7.81□□□□□ -1.16
VPS13A-210ENST00000471439 VWA5B2Q8N398 1253 aa7.81□□□□□ -1.16
VPS13A-210ENST00000471439 NBPF15Q8N660 670 aa7.81□□□□□ -1.16
VPS13A-210ENST00000471439 XAGE2Q96GT9 111 aa7.81□□□□□ -1.16
VPS13A-210ENST00000471439 ABCC10Q5T3U5 1492 aa7.81□□□□□ -1.16
VPS13A-210ENST00000471439 ZCCHC6Q5VYS8 1495 aaKnown RBP7.81□□□□□ -1.16
VPS13A-210ENST00000471439 TMEM229AB2RXF0 380 aa7.8□□□□□ -1.16
VPS13A-210ENST00000471439 GDF10P55107 478 aa7.8□□□□□ -1.16
VPS13A-210ENST00000471439 TRIM52Q96A61 297 aa7.8□□□□□ -1.16
VPS13A-210ENST00000471439 KIAA1024Q9UPX6 916 aa7.8□□□□□ -1.16
VPS13A-210ENST00000471439 PCDHGA11Q9Y5H2 935 aa7.8□□□□□ -1.16
VPS13A-210ENST00000471439 USP3Q9Y6I4 520 aa7.8□□□□□ -1.16
VPS13A-210ENST00000471439 AQRO60306 1485 aaKnown RBP eCLIP7.8□□□□□ -1.167e-7■■■□□ 15.5
VPS13A-210ENST00000471439 USP17L3A6NCW0 530 aa7.79□□□□□ -1.16
VPS13A-210ENST00000471439 USP17L4A6NCW7 530 aa7.79□□□□□ -1.16
VPS13A-210ENST00000471439 WASLO00401 505 aaPredicted RBP7.79□□□□□ -1.16
VPS13A-210ENST00000471439 TLR1Q15399 786 aa7.79□□□□□ -1.16
VPS13A-210ENST00000471439 USP17L2Q6R6M4 530 aa7.79□□□□□ -1.16
VPS13A-210ENST00000471439 USP17L1Q7RTZ2 530 aa7.79□□□□□ -1.16
VPS13A-210ENST00000471439 ZSCAN10Q96SZ4 725 aaPredicted RBP7.79□□□□□ -1.16
VPS13A-210ENST00000471439 SERTAD1Q9UHV2 236 aa7.79□□□□□ -1.16
VPS13A-210ENST00000471439 A6NJR5 290 aa7.78□□□□□ -1.16
VPS13A-210ENST00000471439 SPATA31C2B4DYI2 1134 aa7.78□□□□□ -1.16
VPS13A-210ENST00000471439 INHAP05111 366 aa7.78□□□□□ -1.16
VPS13A-210ENST00000471439 THBS1P07996 1170 aa7.78□□□□□ -1.16
VPS13A-210ENST00000471439 GTF2IP78347 998 aa7.78□□□□□ -1.16
VPS13A-210ENST00000471439 EML3Q32P44 896 aa7.78□□□□□ -1.16
VPS13A-210ENST00000471439 GAS2L1Q99501 681 aaPredicted RBP7.78□□□□□ -1.16
VPS13A-210ENST00000471439 STK17AQ9UEE5 414 aa7.78□□□□□ -1.16
VPS13A-210ENST00000471439 SYNJ1O43426 1573 aa7.78□□□□□ -1.16
VPS13A-210ENST00000471439 DIP2BQ9P265 1576 aa7.77□□□□□ -1.17
VPS13A-210ENST00000471439 GPR25O00155 361 aa7.77□□□□□ -1.17
VPS13A-210ENST00000471439 C4orf17Q53FE4 359 aa7.77□□□□□ -1.17
VPS13A-210ENST00000471439 RIPOR1Q6ZS17 1223 aa7.77□□□□□ -1.17
VPS13A-210ENST00000471439 TAS1R3Q7RTX0 852 aa7.77□□□□□ -1.17
VPS13A-210ENST00000471439 NFATC2IPQ8NCF5 419 aa7.77□□□□□ -1.17
VPS13A-210ENST00000471439 SIRT1Q96EB6 747 aa7.77□□□□□ -1.17
VPS13A-210ENST00000471439 ZNF837Q96EG3 531 aaPredicted RBP7.77□□□□□ -1.17
VPS13A-210ENST00000471439 COL25A1Q9BXS0 654 aaPredicted RBP7.77□□□□□ -1.17
VPS13A-210ENST00000471439 ATP9BO43861 1147 aa7.76□□□□□ -1.17
VPS13A-210ENST00000471439 PSME1Q06323 249 aa7.76□□□□□ -1.17
VPS13A-210ENST00000471439 DBN1Q16643 649 aa7.76□□□□□ -1.17
VPS13A-210ENST00000471439 ESCO1Q5FWF5 840 aa7.76□□□□□ -1.17
VPS13A-210ENST00000471439 SERBP1Q8NC51 408 aaKnown RBP eCLIP7.76□□□□□ -1.17
VPS13A-210ENST00000471439 NANOS1Q8WY41 292 aaKnown RBP7.76□□□□□ -1.17
VPS13A-210ENST00000471439 CNTNAP3BQ96NU0 1288 aa7.76□□□□□ -1.17
VPS13A-210ENST00000471439 CNTNAP3Q9BZ76 1288 aa7.76□□□□□ -1.17
VPS13A-210ENST00000471439 GPAMQ9HCL2 828 aa7.76□□□□□ -1.17
VPS13A-210ENST00000471439 TIMMDC1Q9NPL8 285 aa7.76□□□□□ -1.17
VPS13A-210ENST00000471439 NOD1Q9Y239 953 aa7.76□□□□□ -1.17
VPS13A-210ENST00000471439 TOP2BQ02880 1626 aa7.75□□□□□ -1.17
VPS13A-210ENST00000471439 CLDN10P78369 228 aa7.75□□□□□ -1.17
VPS13A-210ENST00000471439 GAS6Q14393 721 aa7.75□□□□□ -1.17
VPS13A-210ENST00000471439 TMEM214Q6NUQ4 689 aaKnown RBP7.75□□□□□ -1.17
VPS13A-210ENST00000471439 SV2AQ7L0J3 742 aa7.75□□□□□ -1.17
VPS13A-210ENST00000471439 DYRK1BQ9Y463 629 aa7.75□□□□□ -1.17
VPS13A-210ENST00000471439 SUPT5HO00267 1087 aaKnown RBP7.74□□□□□ -1.17
VPS13A-210ENST00000471439 PLA2G4AP47712 749 aa7.74□□□□□ -1.17
VPS13A-210ENST00000471439 ERICH6Q7L0X2 663 aa7.74□□□□□ -1.17
VPS13A-210ENST00000471439 PLEKHM2Q8IWE5 1019 aa7.74□□□□□ -1.17
VPS13A-210ENST00000471439 ZNF358Q9NW07 568 aa7.74□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms