RNA–Protein interactions for RNA: ENST00000471342.1

SF3A1-207, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 459 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-207ENST00000471342 TSPYL6Q8N831 410 aa12.99□□□□□ -0.33
SF3A1-207ENST00000471342 NFATC2IPQ8NCF5 419 aa12.99□□□□□ -0.33
SF3A1-207ENST00000471342 IFT57Q9NWB7 429 aa12.99□□□□□ -0.33
SF3A1-207ENST00000471342 BRWD3Q6RI45 1802 aa12.99□□□□□ -0.33
SF3A1-207ENST00000471342 PRIM1P49642 420 aaKnown RBP12.98□□□□□ -0.33
SF3A1-207ENST00000471342 PDE3BQ13370 1112 aa12.98□□□□□ -0.33
SF3A1-207ENST00000471342 TAF7Q15545 349 aaPredicted RBP12.98□□□□□ -0.33
SF3A1-207ENST00000471342 C8orf58Q8NAV2 365 aa12.98□□□□□ -0.33
SF3A1-207ENST00000471342 ATG3Q9NT62 314 aa12.98□□□□□ -0.33
SF3A1-207ENST00000471342 KCPQ6ZWJ8 1503 aa12.98□□□□□ -0.33
SF3A1-207ENST00000471342 EIF4A1P60842 406 aaKnown RBP12.97□□□□□ -0.33
SF3A1-207ENST00000471342 SLC39A6Q13433 755 aa12.97□□□□□ -0.33
SF3A1-207ENST00000471342 C1orf141Q5JVX7 400 aa12.97□□□□□ -0.33
SF3A1-207ENST00000471342 BABAM1Q9NWV8 329 aa12.97□□□□□ -0.33
SF3A1-207ENST00000471342 PAPPAQ13219 1627 aa12.97□□□□□ -0.33
SF3A1-207ENST00000471342 PRAMEF22A3QJZ6 481 aa12.96□□□□□ -0.33
SF3A1-207ENST00000471342 E9PSI1 815 aa12.96□□□□□ -0.33
SF3A1-207ENST00000471342 LMOD3Q0VAK6 560 aa12.96□□□□□ -0.33
SF3A1-207ENST00000471342 KRT27Q7Z3Y8 459 aa12.96□□□□□ -0.33
SF3A1-207ENST00000471342 ASAP1Q9ULH1 1129 aa12.96□□□□□ -0.33
SF3A1-207ENST00000471342 KDM3BQ7LBC6 1761 aa12.95□□□□□ -0.34
SF3A1-207ENST00000471342 VAMP4O75379 141 aa12.95□□□□□ -0.34
SF3A1-207ENST00000471342 HSP90AB1P08238 724 aaKnown RBP12.95□□□□□ -0.34
SF3A1-207ENST00000471342 EXOSC9Q06265 439 aaKnown RBP12.94□□□□□ -0.34
SF3A1-207ENST00000471342 ZNF790Q6PG37 636 aa12.94□□□□□ -0.34
SF3A1-207ENST00000471342 LRP10Q7Z4F1 713 aa12.94□□□□□ -0.34
SF3A1-207ENST00000471342 RTF1Q92541 710 aaKnown RBP12.94□□□□□ -0.34
SF3A1-207ENST00000471342 ACSBG1Q96GR2 724 aa12.94□□□□□ -0.34
SF3A1-207ENST00000471342 GNAI1P63096 354 aa12.93□□□□□ -0.34
SF3A1-207ENST00000471342 PROM2Q8N271 834 aa12.93□□□□□ -0.34
SF3A1-207ENST00000471342 ZNF496Q96IT1 587 aaPredicted RBP12.93□□□□□ -0.34
SF3A1-207ENST00000471342 DOT1LQ8TEK3 1739 aa12.93□□□□□ -0.34
SF3A1-207ENST00000471342 RNF123Q5XPI4 1314 aa12.92□□□□□ -0.34
SF3A1-207ENST00000471342 BTBD11A6QL63 1104 aa12.92□□□□□ -0.34
SF3A1-207ENST00000471342 GIGYF1O75420 1035 aaPredicted RBP12.92□□□□□ -0.34
SF3A1-207ENST00000471342 PDIA6Q15084 440 aa12.92□□□□□ -0.34
SF3A1-207ENST00000471342 ITGB4P16144 1822 aa12.92□□□□□ -0.34
SF3A1-207ENST00000471342 UBR2Q8IWV8 1755 aa12.92□□□□□ -0.34
SF3A1-207ENST00000471342 VIRMAQ69YN4 1812 aaKnown RBP12.91□□□□□ -0.34
SF3A1-207ENST00000471342 SBF2Q86WG5 1849 aa12.91□□□□□ -0.34
SF3A1-207ENST00000471342 NEFMP07197 916 aa12.91□□□□□ -0.34
SF3A1-207ENST00000471342 CABP4P57796 275 aa12.91□□□□□ -0.34
SF3A1-207ENST00000471342 TSPYL4Q9UJ04 414 aa12.91□□□□□ -0.34
SF3A1-207ENST00000471342 NHSQ6T4R5 1651 aa12.91□□□□□ -0.34
SF3A1-207ENST00000471342 BCL11BQ9C0K0 894 aaPredicted RBP12.9□□□□□ -0.34
SF3A1-207ENST00000471342 USP16Q9Y5T5 823 aa12.9□□□□□ -0.34
SF3A1-207ENST00000471342 TEFQ10587 303 aa12.89□□□□□ -0.35
SF3A1-207ENST00000471342 ITPK1Q13572 414 aa12.89□□□□□ -0.35
SF3A1-207ENST00000471342 FAM196AQ6ZSG2 479 aa12.89□□□□□ -0.35
SF3A1-207ENST00000471342 LRRC4BQ9NT99 713 aa12.89□□□□□ -0.35
SF3A1-207ENST00000471342 RARSP54136 660 aaKnown RBP12.88□□□□□ -0.35
SF3A1-207ENST00000471342 CALD1Q05682 793 aaKnown RBP12.88□□□□□ -0.35
SF3A1-207ENST00000471342 AMIGO3Q86WK7 504 aa12.88□□□□□ -0.35
SF3A1-207ENST00000471342 MYH16Q9H6N6 1097 aa12.88□□□□□ -0.35
SF3A1-207ENST00000471342 TMOD3Q9NYL9 352 aa12.88□□□□□ -0.35
SF3A1-207ENST00000471342 LAS1LQ9Y4W2 734 aaKnown RBP12.88□□□□□ -0.35
SF3A1-207ENST00000471342 NBPF26B4DH59 902 aa12.87□□□□□ -0.35
SF3A1-207ENST00000471342 TRIM37O94972 964 aa12.87□□□□□ -0.35
SF3A1-207ENST00000471342 BRPF1P55201 1214 aaPredicted RBP12.87□□□□□ -0.35
SF3A1-207ENST00000471342 NBPF14Q5TI25 921 aa12.87□□□□□ -0.35
SF3A1-207ENST00000471342 NBPF10Q6P3W6 841 aaKnown RBP12.87□□□□□ -0.35
SF3A1-207ENST00000471342 NBPF15Q8N660 670 aa12.87□□□□□ -0.35
SF3A1-207ENST00000471342 CICQ96RK0 1608 aaPredicted RBP12.87□□□□□ -0.35
SF3A1-207ENST00000471342 ELL2O00472 640 aaPredicted RBP12.86□□□□□ -0.35
SF3A1-207ENST00000471342 BCAR3O75815 825 aa12.86□□□□□ -0.35
SF3A1-207ENST00000471342 KCNQ4P56696 695 aa12.86□□□□□ -0.35
SF3A1-207ENST00000471342 PROSER3Q2NL68 480 aa12.86□□□□□ -0.35
SF3A1-207ENST00000471342 SSH1Q8WYL5 1049 aa12.86□□□□□ -0.35
SF3A1-207ENST00000471342 PALLDQ8WX93 1383 aa12.85□□□□□ -0.35
SF3A1-207ENST00000471342 CYP19A1P11511 503 aaPredicted RBP12.85□□□□□ -0.35
SF3A1-207ENST00000471342 TWISTNBQ3B726 338 aaPredicted RBP12.85□□□□□ -0.35
SF3A1-207ENST00000471342 INTS5Q6P9B9 1019 aaKnown RBP12.85□□□□□ -0.35
SF3A1-207ENST00000471342 VSIG10Q8N0Z9 540 aa12.85□□□□□ -0.35
SF3A1-207ENST00000471342 MRPL50Q8N5N7 158 aaKnown RBP12.85□□□□□ -0.35
SF3A1-207ENST00000471342 TNNQ9UQP3 1299 aa12.85□□□□□ -0.35
SF3A1-207ENST00000471342 C5P01031 1676 aa12.85□□□□□ -0.35
SF3A1-207ENST00000471342 TJP1Q07157 1748 aa12.85□□□□□ -0.35
SF3A1-207ENST00000471342 BTAF1O14981 1849 aa12.84□□□□□ -0.35
SF3A1-207ENST00000471342 LOC102724428A0A0B4J2F2 783 aa12.84□□□□□ -0.35
SF3A1-207ENST00000471342 A0A0G2JS52 829 aa12.84□□□□□ -0.35
SF3A1-207ENST00000471342 PTCD1O75127 700 aaKnown RBP12.84□□□□□ -0.35
SF3A1-207ENST00000471342 HOXB7P09629 217 aa12.84□□□□□ -0.35
SF3A1-207ENST00000471342 SIK1P57059 783 aa12.84□□□□□ -0.35
SF3A1-207ENST00000471342 MYT1Q01538 1121 aa12.84□□□□□ -0.35
SF3A1-207ENST00000471342 G2E3Q7L622 706 aa12.84□□□□□ -0.35
SF3A1-207ENST00000471342 DNAJC10Q8IXB1 793 aa12.84□□□□□ -0.35
SF3A1-207ENST00000471342 CAMKK2Q96RR4 588 aa12.84□□□□□ -0.35
SF3A1-207ENST00000471342 TNS1Q9HBL0 1735 aaKnown RBP12.84□□□□□ -0.35
SF3A1-207ENST00000471342 ZNF831Q5JPB2 1677 aa12.83□□□□□ -0.35
SF3A1-207ENST00000471342 PLSCR1O15162 318 aa12.83□□□□□ -0.36
SF3A1-207ENST00000471342 CT47B1P0C2W7 299 aaPredicted RBP12.83□□□□□ -0.36
SF3A1-207ENST00000471342 LINC00116Q8NCU8 138 aa12.83□□□□□ -0.36
SF3A1-207ENST00000471342 FMNL2Q96PY5 1086 aa12.83□□□□□ -0.36
SF3A1-207ENST00000471342 SOS1Q07889 1333 aaPredicted RBP12.83□□□□□ -0.36
SF3A1-207ENST00000471342 RREB1Q92766 1687 aa12.83□□□□□ -0.36
SF3A1-207ENST00000471342 LY75O60449 1722 aa12.82□□□□□ -0.36
SF3A1-207ENST00000471342 TCERG1O14776 1098 aaKnown RBP12.82□□□□□ -0.36
SF3A1-207ENST00000471342 A1BGP04217 495 aa12.82□□□□□ -0.36
SF3A1-207ENST00000471342 SNRPA1P09661 255 aaKnown RBP12.82□□□□□ -0.36
SF3A1-207ENST00000471342 SYTL4Q96C24 671 aaPredicted RBP12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms