RNA–Protein interactions for RNA: ENST00000471260.1

HMGN1-211, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 615 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-211ENST00000471260 SSFA2P28290 1259 aa18.24■□□□□ 0.51
HMGN1-211ENST00000471260 CABP4P57796 275 aa18.24■□□□□ 0.51
HMGN1-211ENST00000471260 KDM6AO15550 1401 aaPredicted RBP18.23■□□□□ 0.51
HMGN1-211ENST00000471260 YY1P25490 414 aa18.22■□□□□ 0.51
HMGN1-211ENST00000471260 AKAP4Q5JQC9 854 aa18.22■□□□□ 0.51
HMGN1-211ENST00000471260 LINC00116Q8NCU8 138 aa18.22■□□□□ 0.51
HMGN1-211ENST00000471260 ITPK1Q13572 414 aa18.21■□□□□ 0.51
HMGN1-211ENST00000471260 ZNF831Q5JPB2 1677 aa18.21■□□□□ 0.51
HMGN1-211ENST00000471260 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.2■□□□□ 0.5
HMGN1-211ENST00000471260 HMOX1P09601 288 aa18.19■□□□□ 0.5
HMGN1-211ENST00000471260 RC3H1Q5TC82 1133 aaKnown RBP18.19■□□□□ 0.5
HMGN1-211ENST00000471260 UBR3Q6ZT12 1888 aa18.19■□□□□ 0.5
HMGN1-211ENST00000471260 NFATC2IPQ8NCF5 419 aa18.19■□□□□ 0.5
HMGN1-211ENST00000471260 RBM42Q9BTD8 480 aaKnown RBP18.19■□□□□ 0.5
HMGN1-211ENST00000471260 GNPATO15228 680 aa18.17■□□□□ 0.5
HMGN1-211ENST00000471260 PHF14O94880 888 aa18.17■□□□□ 0.5
HMGN1-211ENST00000471260 AMIGO3Q86WK7 504 aa18.17■□□□□ 0.5
HMGN1-211ENST00000471260 MSL1Q68DK7 614 aa18.16■□□□□ 0.5
HMGN1-211ENST00000471260 KLHL34Q8N239 644 aa18.16■□□□□ 0.5
HMGN1-211ENST00000471260 SLC4A9Q96Q91 983 aa18.16■□□□□ 0.5
HMGN1-211ENST00000471260 RTCBQ9Y3I0 505 aaKnown RBP18.16■□□□□ 0.5
HMGN1-211ENST00000471260 CD2APQ9Y5K6 639 aa18.16■□□□□ 0.5
HMGN1-211ENST00000471260 UTRNP46939 3433 aa18.16■□□□□ 0.5
HMGN1-211ENST00000471260 CNTNAP4Q9C0A0 1308 aa18.16■□□□□ 0.5
HMGN1-211ENST00000471260 COL3A1P02461 1466 aaPredicted RBP18.15■□□□□ 0.5
HMGN1-211ENST00000471260 ADRA2BP18089 450 aa18.15■□□□□ 0.5
HMGN1-211ENST00000471260 GPR162Q16538 588 aa18.15■□□□□ 0.5
HMGN1-211ENST00000471260 TRAPPC3LQ5T215 181 aa18.15■□□□□ 0.5
HMGN1-211ENST00000471260 CFAP53Q96M91 514 aa18.15■□□□□ 0.5
HMGN1-211ENST00000471260 SLC52A2Q9HAB3 445 aa18.15■□□□□ 0.5
HMGN1-211ENST00000471260 SCN11AQ9UI33 1791 aa18.14■□□□□ 0.5
HMGN1-211ENST00000471260 RNMTO43148 476 aaKnown RBP18.14■□□□□ 0.49
HMGN1-211ENST00000471260 MTHFSDQ2M296 383 aaKnown RBP18.14■□□□□ 0.49
HMGN1-211ENST00000471260 U2SURPO15042 1029 aaKnown RBP18.13■□□□□ 0.49
HMGN1-211ENST00000471260 PTCD1O75127 700 aaKnown RBP18.13■□□□□ 0.49
HMGN1-211ENST00000471260 RPS6KA4O75676 772 aa18.13■□□□□ 0.49
HMGN1-211ENST00000471260 CNGB1Q14028 1251 aaPredicted RBP18.13■□□□□ 0.49
HMGN1-211ENST00000471260 LGR6Q9HBX8 967 aa18.13■□□□□ 0.49
HMGN1-211ENST00000471260 NLGN2Q8NFZ4 835 aa18.12■□□□□ 0.49
HMGN1-211ENST00000471260 GAS2L2Q8NHY3 880 aa18.12■□□□□ 0.49
HMGN1-211ENST00000471260 SMIM5Q71RC9 77 aa18.11■□□□□ 0.49
HMGN1-211ENST00000471260 NLGN1Q8N2Q7 840 aa18.11■□□□□ 0.49
HMGN1-211ENST00000471260 NUDCQ9Y266 331 aa18.11■□□□□ 0.49
HMGN1-211ENST00000471260 MRC1P22897 1456 aa18.11■□□□□ 0.49
HMGN1-211ENST00000471260 COL5A3P25940 1745 aaPredicted RBP18.1■□□□□ 0.49
HMGN1-211ENST00000471260 CICQ96RK0 1608 aaPredicted RBP18.09■□□□□ 0.49
HMGN1-211ENST00000471260 GRIN3BO60391 1043 aa18.09■□□□□ 0.49
HMGN1-211ENST00000471260 PPP2R1AP30153 589 aa18.09■□□□□ 0.49
HMGN1-211ENST00000471260 ARHGEF1Q92888 912 aaKnown RBP18.09■□□□□ 0.49
HMGN1-211ENST00000471260 CHD4Q14839 1912 aa18.09■□□□□ 0.49
HMGN1-211ENST00000471260 ADAMTS7Q9UKP4 1686 aa18.09■□□□□ 0.49
HMGN1-211ENST00000471260 RFC4P35249 363 aa18.08■□□□□ 0.48
HMGN1-211ENST00000471260 CRKLP46109 303 aaKnown RBP18.08■□□□□ 0.48
HMGN1-211ENST00000471260 VSIG10Q8N0Z9 540 aa18.08■□□□□ 0.48
HMGN1-211ENST00000471260 GNAT3A8MTJ3 354 aa18.07■□□□□ 0.48
HMGN1-211ENST00000471260 PELP1Q8IZL8 1130 aaKnown RBP18.06■□□□□ 0.48
HMGN1-211ENST00000471260 MYH14Q7Z406 1995 aaKnown RBP18.06■□□□□ 0.48
HMGN1-211ENST00000471260 FCHSD2O94868 740 aa18.05■□□□□ 0.48
HMGN1-211ENST00000471260 MMP10P09238 476 aa18.05■□□□□ 0.48
HMGN1-211ENST00000471260 GYS1P13807 737 aa18.05■□□□□ 0.48
HMGN1-211ENST00000471260 RSPH6AQ9H0K4 717 aa18.05■□□□□ 0.48
HMGN1-211ENST00000471260 VIRMAQ69YN4 1812 aaKnown RBP18.05■□□□□ 0.48
HMGN1-211ENST00000471260 PRKAR2BP31323 418 aa18.04■□□□□ 0.48
HMGN1-211ENST00000471260 TEFQ10587 303 aa18.04■□□□□ 0.48
HMGN1-211ENST00000471260 SLC39A6Q13433 755 aa18.04■□□□□ 0.48
HMGN1-211ENST00000471260 INTS5Q6P9B9 1019 aaKnown RBP18.04■□□□□ 0.48
HMGN1-211ENST00000471260 IL17REQ8NFR9 667 aa18.04■□□□□ 0.48
HMGN1-211ENST00000471260 TJP1Q07157 1748 aa18.03■□□□□ 0.48
HMGN1-211ENST00000471260 YBX3P16989 372 aaKnown RBP eCLIP18.03■□□□□ 0.48
HMGN1-211ENST00000471260 DNAJC10Q8IXB1 793 aa18.03■□□□□ 0.48
HMGN1-211ENST00000471260 TTC5Q8N0Z6 440 aa18.03■□□□□ 0.48
HMGN1-211ENST00000471260 CCDC87Q9NVE4 849 aa18.03■□□□□ 0.48
HMGN1-211ENST00000471260 U2AF1L5P0DN76 240 aaPredicted RBP18.02■□□□□ 0.48
HMGN1-211ENST00000471260 CYP19A1P11511 503 aaPredicted RBP18.02■□□□□ 0.48
HMGN1-211ENST00000471260 U2AF1Q01081 240 aaKnown RBP eCLIP18.02■□□□□ 0.48
HMGN1-211ENST00000471260 ZNF784Q8NCA9 323 aaPredicted RBP18.02■□□□□ 0.48
HMGN1-211ENST00000471260 CEMIPQ8WUJ3 1361 aa18.02■□□□□ 0.47
HMGN1-211ENST00000471260 TGFB2P61812 414 aa18.01■□□□□ 0.47
HMGN1-211ENST00000471260 PHACTR3Q96KR7 559 aa18.01■□□□□ 0.47
HMGN1-211ENST00000471260 PARP3Q9Y6F1 533 aa18.01■□□□□ 0.47
HMGN1-211ENST00000471260 GOLGB1Q14789 3259 aaKnown RBP18.01■□□□□ 0.47
HMGN1-211ENST00000471260 KCPQ6ZWJ8 1503 aa18.01■□□□□ 0.47
HMGN1-211ENST00000471260 USP42Q9H9J4 1324 aaKnown RBP18■□□□□ 0.47
HMGN1-211ENST00000471260 ZNF790Q6PG37 636 aa18■□□□□ 0.47
HMGN1-211ENST00000471260 TEX13AQ9BXU3 409 aaPredicted RBP18■□□□□ 0.47
HMGN1-211ENST00000471260 C4AP0C0L4 1744 aa17.99■□□□□ 0.47
HMGN1-211ENST00000471260 STARD3NLO95772 234 aa17.99■□□□□ 0.47
HMGN1-211ENST00000471260 SOS1Q07889 1333 aaPredicted RBP17.98■□□□□ 0.47
HMGN1-211ENST00000471260 HTATSF1O43719 755 aaKnown RBP17.98■□□□□ 0.47
HMGN1-211ENST00000471260 ZPR1O75312 459 aa17.98■□□□□ 0.47
HMGN1-211ENST00000471260 RTF1Q92541 710 aaKnown RBP17.98■□□□□ 0.47
HMGN1-211ENST00000471260 UBR2Q8IWV8 1755 aa17.98■□□□□ 0.47
HMGN1-211ENST00000471260 KIF13BQ9NQT8 1826 aa17.98■□□□□ 0.47
HMGN1-211ENST00000471260 HEG1Q9ULI3 1381 aa17.96■□□□□ 0.47
HMGN1-211ENST00000471260 BTBD11A6QL63 1104 aa17.96■□□□□ 0.47
HMGN1-211ENST00000471260 NEFMP07197 916 aa17.96■□□□□ 0.47
HMGN1-211ENST00000471260 FKBP8Q14318 412 aa17.96■□□□□ 0.47
HMGN1-211ENST00000471260 ZNF496Q96IT1 587 aaPredicted RBP17.96■□□□□ 0.47
HMGN1-211ENST00000471260 FMNL2Q96PY5 1086 aa17.96■□□□□ 0.47
HMGN1-211ENST00000471260 SRP68Q9UHB9 627 aaKnown RBP17.96■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms