RNA–Protein interactions for RNA: ENST00000470531.5

CHD3-208, Transcript of chromodomain helicase DNA binding protein 3, human

TSL 2

Gene CHD3, Length 3,744 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD3-208	ENST00000470531	RAB11FIP4	Q86YS3	637 aa		12.85	□□□□□ -0.35
CHD3-208	ENST00000470531	PNMA6E	A0A0J9YXQ4	647 aa		12.85	□□□□□ -0.35
CHD3-208	ENST00000470531	BECN2	A8MW95	431 aa		12.85	□□□□□ -0.35
CHD3-208	ENST00000470531	EIF4A2	Q14240	407 aa	Known RBP	12.85	□□□□□ -0.35
CHD3-208	ENST00000470531	GORAB	Q5T7V8	394 aa		12.85	□□□□□ -0.35
CHD3-208	ENST00000470531	CLASRP	Q8N2M8	674 aa	Known RBP	12.85	□□□□□ -0.35
CHD3-208	ENST00000470531	PHAX	Q9H814	394 aa	Known RBP	12.85	□□□□□ -0.35
CHD3-208	ENST00000470531	CCDC39	Q9UFE4	941 aa		12.85	□□□□□ -0.35
CHD3-208	ENST00000470531	RNF17	Q9BXT8	1623 aa	Known RBP	12.84	□□□□□ -0.35
CHD3-208	ENST00000470531	CCDC30	Q5VVM6	783 aa		12.84	□□□□□ -0.35
CHD3-208	ENST00000470531	NDUFB9	Q9Y6M9	179 aa		12.84	□□□□□ -0.35
CHD3-208	ENST00000470531	IQGAP1	P46940	1657 aa		12.84	□□□□□ -0.35
CHD3-208	ENST00000470531	UNC13B	O14795	1591 aa		12.84	□□□□□ -0.35
CHD3-208	ENST00000470531	GNAI3	P08754	354 aa		12.84	□□□□□ -0.35
CHD3-208	ENST00000470531	KCNA4	P22459	653 aa		12.84	□□□□□ -0.35
CHD3-208	ENST00000470531	HDGF	P51858	240 aa	Known RBP	12.84	□□□□□ -0.35
CHD3-208	ENST00000470531	FILIP1	Q7Z7B0	1213 aa		12.84	□□□□□ -0.35
CHD3-208	ENST00000470531	USP48	Q86UV5	1035 aa		12.84	□□□□□ -0.35
CHD3-208	ENST00000470531	GNL2	Q13823	731 aa	Known RBP	12.84	□□□□□ -0.35
CHD3-208	ENST00000470531	SF3A1	Q15459	793 aa	Known RBP	12.84	□□□□□ -0.35
CHD3-208	ENST00000470531	LARP1B	Q659C4	914 aa	Known RBP	12.84	□□□□□ -0.35
CHD3-208	ENST00000470531	AACS	Q86V21	672 aa		12.84	□□□□□ -0.35
CHD3-208	ENST00000470531	CCAR2	Q8N163	923 aa	Known RBP	12.84	□□□□□ -0.35
CHD3-208	ENST00000470531	TOMM22	Q9NS69	142 aa		12.84	□□□□□ -0.35
CHD3-208	ENST00000470531	SLC52A1	Q9NWF4	448 aa		12.84	□□□□□ -0.35
CHD3-208	ENST00000470531	IQGAP3	Q86VI3	1631 aa		12.83	□□□□□ -0.35
CHD3-208	ENST00000470531	WASL	O00401	505 aa	Predicted RBP	12.83	□□□□□ -0.36
CHD3-208	ENST00000470531	PPP1R42	Q7Z4L9	355 aa		12.83	□□□□□ -0.36
CHD3-208	ENST00000470531	PLEKHF1	Q96S99	279 aa		12.83	□□□□□ -0.36
CHD3-208	ENST00000470531	G3BP1	Q13283	466 aa	Known RBP eCLIP	12.83	□□□□□ -0.36
CHD3-208	ENST00000470531	PPP1R9B	Q96SB3	815 aa		12.83	□□□□□ -0.36
CHD3-208	ENST00000470531	DUOX2	Q9NRD8	1548 aa		12.83	□□□□□ -0.36
CHD3-208	ENST00000470531	MBD3	O95983	291 aa		12.83	□□□□□ -0.36
CHD3-208	ENST00000470531	ANKRD44	Q8N8A2	993 aa		12.83	□□□□□ -0.36
CHD3-208	ENST00000470531	DCTPP1	Q9H773	170 aa		12.83	□□□□□ -0.36
CHD3-208	ENST00000470531	GOLGA6L19	H0YKK7	550 aa		12.82	□□□□□ -0.36
CHD3-208	ENST00000470531	ADCY5	O95622	1261 aa		12.82	□□□□□ -0.36
CHD3-208	ENST00000470531	PSME1	Q06323	249 aa		12.82	□□□□□ -0.36
CHD3-208	ENST00000470531	MTHFSD	Q2M296	383 aa	Known RBP	12.82	□□□□□ -0.36
CHD3-208	ENST00000470531	RIC3	Q7Z5B4	369 aa		12.82	□□□□□ -0.36
CHD3-208	ENST00000470531	SRCIN1	Q9C0H9	1055 aa		12.82	□□□□□ -0.36
CHD3-208	ENST00000470531	CWC22	Q9HCG8	908 aa	Known RBP	12.82	□□□□□ -0.36
CHD3-208	ENST00000470531	EID1	Q9Y6B2	187 aa		12.82	□□□□□ -0.36
CHD3-208	ENST00000470531	PI4KAP2	A4QPH2	592 aa		12.82	□□□□□ -0.36
CHD3-208	ENST00000470531	PI4KAP1	Q8N8J0	262 aa		12.82	□□□□□ -0.36
CHD3-208	ENST00000470531	GPATCH3	Q96I76	525 aa		12.82	□□□□□ -0.36
CHD3-208	ENST00000470531	NCOA3	Q9Y6Q9	1424 aa		12.82	□□□□□ -0.36
CHD3-208	ENST00000470531	CEP152	O94986	1710 aa		12.82	□□□□□ -0.36
CHD3-208	ENST00000470531	PLXNC1	O60486	1568 aa		12.82	□□□□□ -0.36
CHD3-208	ENST00000470531	UNC5CL	Q8IV45	518 aa		12.82	□□□□□ -0.36
CHD3-208	ENST00000470531	CNTROB	Q8N137	903 aa		12.82	□□□□□ -0.36
CHD3-208	ENST00000470531	LMBRD1	Q9NUN5	540 aa		12.82	□□□□□ -0.36
CHD3-208	ENST00000470531	MSH6	P52701	1360 aa		12.81	□□□□□ -0.36
CHD3-208	ENST00000470531	PREX2	Q70Z35	1606 aa		12.81	□□□□□ -0.36
CHD3-208	ENST00000470531	ATP2B1	P20020	1258 aa		12.81	□□□□□ -0.36
CHD3-208	ENST00000470531	DNM1	Q05193	864 aa	Known RBP	12.81	□□□□□ -0.36
CHD3-208	ENST00000470531	FAM177A1	Q8N128	213 aa	Predicted RBP	12.81	□□□□□ -0.36
CHD3-208	ENST00000470531	GPT2	Q8TD30	523 aa		12.81	□□□□□ -0.36
CHD3-208	ENST00000470531	C16orf45	Q96MC5	204 aa	Predicted RBP	12.81	□□□□□ -0.36
CHD3-208	ENST00000470531	NOL12	Q9UGY1	213 aa	Known RBP eCLIP	12.81	□□□□□ -0.36
CHD3-208	ENST00000470531		V9GYY5	206 aa	Predicted RBP	12.81	□□□□□ -0.36
CHD3-208	ENST00000470531	CLTCL1	P53675	1640 aa		12.81	□□□□□ -0.36
CHD3-208	ENST00000470531	ABCC11	Q96J66	1382 aa		12.81	□□□□□ -0.36
CHD3-208	ENST00000470531	GEMIN5	Q8TEQ6	1508 aa	Known RBP eCLIP	12.81	□□□□□ -0.36
CHD3-208	ENST00000470531	C1orf141	Q5JVX7	400 aa		12.81	□□□□□ -0.36
CHD3-208	ENST00000470531	ISM2	Q6H9L7	571 aa		12.81	□□□□□ -0.36
CHD3-208	ENST00000470531	CD109	Q6YHK3	1445 aa		12.81	□□□□□ -0.36
CHD3-208	ENST00000470531	KLHDC4	Q8TBB5	520 aa		12.8	□□□□□ -0.36
CHD3-208	ENST00000470531	ACE	P12821	1306 aa		12.8	□□□□□ -0.36
CHD3-208	ENST00000470531	IQSEC2	Q5JU85	1478 aa		12.8	□□□□□ -0.36
CHD3-208	ENST00000470531	CCT4	P50991	539 aa	Known RBP	12.8	□□□□□ -0.36
CHD3-208	ENST00000470531	PPIP5K1	Q6PFW1	1433 aa		12.8	□□□□□ -0.36
CHD3-208	ENST00000470531	ZNF771	Q7L3S4	317 aa	Predicted RBP	12.8	□□□□□ -0.36
CHD3-208	ENST00000470531	APP	P05067	770 aa		12.8	□□□□□ -0.36
CHD3-208	ENST00000470531	ZC3H6	P61129	1189 aa	Known RBP	12.8	□□□□□ -0.36
CHD3-208	ENST00000470531	ZNF518A	Q6AHZ1	1483 aa		12.8	□□□□□ -0.36
CHD3-208	ENST00000470531	ESCO1	Q5FWF5	840 aa		12.79	□□□□□ -0.36
CHD3-208	ENST00000470531	PDRG1	Q9NUG6	133 aa		12.79	□□□□□ -0.36
CHD3-208	ENST00000470531	TRMT1	Q9NXH9	659 aa	Known RBP	12.79	□□□□□ -0.36
CHD3-208	ENST00000470531	EIF2AK3	Q9NZJ5	1116 aa	Known RBP	12.79	□□□□□ -0.36
CHD3-208	ENST00000470531	ESYT1	Q9BSJ8	1104 aa		12.79	□□□□□ -0.36
CHD3-208	ENST00000470531	NLRP2	Q9NX02	1062 aa		12.79	□□□□□ -0.36
CHD3-208	ENST00000470531	WDR33	Q9C0J8	1336 aa	Known RBP	12.79	□□□□□ -0.36
CHD3-208	ENST00000470531	BRD2	P25440	801 aa	Known RBP	12.79	□□□□□ -0.36
CHD3-208	ENST00000470531	ZNF530	Q6P9A1	599 aa	Predicted RBP	12.79	□□□□□ -0.36
CHD3-208	ENST00000470531	ZMYM3	Q14202	1370 aa		12.78	□□□□□ -0.36
CHD3-208	ENST00000470531	SASS6	Q6UVJ0	657 aa		12.78	□□□□□ -0.36
CHD3-208	ENST00000470531	ERCC4	Q92889	916 aa	Predicted RBP	12.78	□□□□□ -0.36
CHD3-208	ENST00000470531	SYTL4	Q96C24	671 aa	Predicted RBP	12.78	□□□□□ -0.36
CHD3-208	ENST00000470531	ATP6V1D	Q9Y5K8	247 aa		12.78	□□□□□ -0.36
CHD3-208	ENST00000470531	GJB2	P29033	226 aa		12.78	□□□□□ -0.36
CHD3-208	ENST00000470531	TPD52L1	Q16890	204 aa	Predicted RBP	12.78	□□□□□ -0.36
CHD3-208	ENST00000470531	CSPP1	Q1MSJ5	1256 aa		12.78	□□□□□ -0.36
CHD3-208	ENST00000470531	GOLGA6L6	A8MZA4	724 aa		12.77	□□□□□ -0.36
CHD3-208	ENST00000470531	RAB11FIP3	O75154	756 aa		12.77	□□□□□ -0.36
CHD3-208	ENST00000470531	IL13	P35225	146 aa		12.77	□□□□□ -0.36
CHD3-208	ENST00000470531	CWF19L2	Q2TBE0	894 aa	Known RBP	12.77	□□□□□ -0.36
CHD3-208	ENST00000470531	LRSAM1	Q6UWE0	723 aa		12.77	□□□□□ -0.36
CHD3-208	ENST00000470531	TRERF1	Q96PN7	1200 aa		12.77	□□□□□ -0.36
CHD3-208	ENST00000470531	TMX1	Q9H3N1	280 aa		12.77	□□□□□ -0.36

Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms