RNA–Protein interactions for RNA: ENST00000470167.1

COL3A1-205, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2

Gene COL3A1, Length 628 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-205ENST00000470167 NCAPGQ9BPX3 1015 aa6.36□□□□□ -1.39
COL3A1-205ENST00000470167 HIRIP3Q9BW71 556 aaPredicted RBP6.36□□□□□ -1.39
COL3A1-205ENST00000470167 ARHGEF10LQ9HCE6 1279 aa6.36□□□□□ -1.39
COL3A1-205ENST00000470167 TSR3Q9UJK0 312 aaKnown RBP6.36□□□□□ -1.39
COL3A1-205ENST00000470167 PCDHB3Q9Y5E6 796 aa6.36□□□□□ -1.39
COL3A1-205ENST00000470167 ANKRD62A6NC57 917 aa6.35□□□□□ -1.39
COL3A1-205ENST00000470167 WASHC4Q2M389 1173 aa6.35□□□□□ -1.39
COL3A1-205ENST00000470167 CT47A1Q5JQC4 288 aaPredicted RBP6.35□□□□□ -1.39
COL3A1-205ENST00000470167 ZFYVE27Q5T4F4 411 aa6.35□□□□□ -1.39
COL3A1-205ENST00000470167 DESI1Q6ICB0 168 aa6.35□□□□□ -1.39
COL3A1-205ENST00000470167 SIRT1Q96EB6 747 aa6.35□□□□□ -1.39
COL3A1-205ENST00000470167 USB1Q9BQ65 265 aaKnown RBP6.35□□□□□ -1.39
COL3A1-205ENST00000470167 FAM13BQ9NYF5 915 aa6.35□□□□□ -1.39
COL3A1-205ENST00000470167 ABCF2Q9UG63 623 aa6.35□□□□□ -1.39
COL3A1-205ENST00000470167 UNC13AQ9UPW8 1703 aa6.34□□□□□ -1.39
COL3A1-205ENST00000470167 ESPNB1AK53 854 aa6.34□□□□□ -1.39
COL3A1-205ENST00000470167 CTAGE5O15320 804 aa6.34□□□□□ -1.39
COL3A1-205ENST00000470167 PEX19P40855 299 aa6.34□□□□□ -1.39
COL3A1-205ENST00000470167 BRICD5Q6PL45 260 aa6.34□□□□□ -1.39
COL3A1-205ENST00000470167 SCUBE3Q8IX30 993 aa6.34□□□□□ -1.39
COL3A1-205ENST00000470167 MICAL1Q8TDZ2 1067 aa6.34□□□□□ -1.39
COL3A1-205ENST00000470167 THAP11Q96EK4 314 aa6.34□□□□□ -1.39
COL3A1-205ENST00000470167 IRF2BPLQ9H1B7 796 aa6.34□□□□□ -1.39
COL3A1-205ENST00000470167 WBP1LQ9NX94 342 aa6.34□□□□□ -1.39
COL3A1-205ENST00000470167 DONSONQ9NYP3 566 aa6.34□□□□□ -1.39
COL3A1-205ENST00000470167 RAD54L2Q9Y4B4 1467 aa6.34□□□□□ -1.4
COL3A1-205ENST00000470167 TULP2O00295 520 aa6.33□□□□□ -1.4
COL3A1-205ENST00000470167 NR1I2O75469 434 aa6.33□□□□□ -1.4
COL3A1-205ENST00000470167 FMNL1O95466 1100 aaPredicted RBP6.33□□□□□ -1.4
COL3A1-205ENST00000470167 COPB2P35606 906 aa6.33□□□□□ -1.4
COL3A1-205ENST00000470167 TDO2P48775 406 aa6.33□□□□□ -1.4
COL3A1-205ENST00000470167 NEXNQ0ZGT2 675 aa6.33□□□□□ -1.4
COL3A1-205ENST00000470167 LYPD8Q6UX82 237 aa6.33□□□□□ -1.4
COL3A1-205ENST00000470167 KRTAP3-3Q9BYR6 98 aa6.33□□□□□ -1.4
COL3A1-205ENST00000470167 KRTAP3-2Q9BYR7 98 aa6.33□□□□□ -1.4
COL3A1-205ENST00000470167 RANBP17Q9H2T7 1088 aaKnown RBP6.33□□□□□ -1.4
COL3A1-205ENST00000470167 RAD50Q92878 1312 aa6.32□□□□□ -1.4
COL3A1-205ENST00000470167 CT47B1P0C2W7 299 aaPredicted RBP6.32□□□□□ -1.4
COL3A1-205ENST00000470167 ZNF853P0CG23 659 aa6.32□□□□□ -1.4
COL3A1-205ENST00000470167 C11orf91Q3C1V1 193 aa6.32□□□□□ -1.4
COL3A1-205ENST00000470167 CTR9Q6PD62 1173 aa6.32□□□□□ -1.4
COL3A1-205ENST00000470167 EP400NLQ6ZTU2 488 aa6.32□□□□□ -1.4
COL3A1-205ENST00000470167 RPAINQ86UA6 219 aa6.32□□□□□ -1.4
COL3A1-205ENST00000470167 DCAF11Q8TEB1 546 aa6.32□□□□□ -1.4
COL3A1-205ENST00000470167 SUDS3Q9H7L9 328 aaPredicted RBP6.32□□□□□ -1.4
COL3A1-205ENST00000470167 SMC4Q9NTJ3 1288 aa6.32□□□□□ -1.4
COL3A1-205ENST00000470167 MAP10Q9P2G4 905 aa6.32□□□□□ -1.4
COL3A1-205ENST00000470167 PNMA2Q9UL42 364 aa6.32□□□□□ -1.4
COL3A1-205ENST00000470167 CFAP65Q6ZU64 1925 aaKnown RBP6.32□□□□□ -1.4
COL3A1-205ENST00000470167 KIF4AO95239 1232 aa6.31□□□□□ -1.4
COL3A1-205ENST00000470167 F12P00748 615 aaPredicted RBP6.31□□□□□ -1.4
COL3A1-205ENST00000470167 JUNDP17535 347 aa6.31□□□□□ -1.4
COL3A1-205ENST00000470167 COPS2P61201 443 aa6.31□□□□□ -1.4
COL3A1-205ENST00000470167 SF3B2Q13435 895 aaKnown RBP6.31□□□□□ -1.4
COL3A1-205ENST00000470167 L1TD1Q5T7N2 865 aaKnown RBP6.31□□□□□ -1.4
COL3A1-205ENST00000470167 THSD4Q6ZMP0 1018 aa6.31□□□□□ -1.4
COL3A1-205ENST00000470167 CREBRFQ8IUR6 639 aa6.31□□□□□ -1.4
COL3A1-205ENST00000470167 RETREG2Q8NC44 543 aa6.31□□□□□ -1.4
COL3A1-205ENST00000470167 MNS1Q8NEH6 495 aa6.31□□□□□ -1.4
COL3A1-205ENST00000470167 FRAT1Q92837 279 aaPredicted RBP6.31□□□□□ -1.4
COL3A1-205ENST00000470167 CHMP4CQ96CF2 233 aa6.31□□□□□ -1.4
COL3A1-205ENST00000470167 BRMS1Q9HCU9 246 aa6.31□□□□□ -1.4
COL3A1-205ENST00000470167 PRDM9Q9NQV7 894 aa6.31□□□□□ -1.4
COL3A1-205ENST00000470167 UNCXA6NJT0 531 aa6.3□□□□□ -1.4
COL3A1-205ENST00000470167 MPHOSPH10O00566 681 aaKnown RBP6.3□□□□□ -1.4
COL3A1-205ENST00000470167 PPP1R12AO14974 1030 aaPredicted RBP6.3□□□□□ -1.4
COL3A1-205ENST00000470167 CREB3O43889 395 aa6.3□□□□□ -1.4
COL3A1-205ENST00000470167 TLL1O43897 1013 aa6.3□□□□□ -1.4
COL3A1-205ENST00000470167 SH3BP5O60239 455 aa6.3□□□□□ -1.4
COL3A1-205ENST00000470167 MAP4K4O95819 1239 aaPredicted RBP6.3□□□□□ -1.4
COL3A1-205ENST00000470167 ILDR2Q71H61 639 aa6.3□□□□□ -1.4
COL3A1-205ENST00000470167 JMYQ8N9B5 988 aa6.3□□□□□ -1.4
COL3A1-205ENST00000470167 KCTD12Q96CX2 325 aaKnown RBP6.3□□□□□ -1.4
COL3A1-205ENST00000470167 ALG2Q9H553 416 aa6.3□□□□□ -1.4
COL3A1-205ENST00000470167 METTL14Q9HCE5 456 aaKnown RBP6.3□□□□□ -1.4
COL3A1-205ENST00000470167 MED4Q9NPJ6 270 aa6.3□□□□□ -1.4
COL3A1-205ENST00000470167 CWC25Q9NXE8 425 aaPredicted RBP6.3□□□□□ -1.4
COL3A1-205ENST00000470167 PAXBP1Q9Y5B6 917 aa6.3□□□□□ -1.4
COL3A1-205ENST00000470167 IPO7O95373 1038 aaKnown RBP6.29□□□□□ -1.4
COL3A1-205ENST00000470167 CAPN2P17655 700 aa6.29□□□□□ -1.4
COL3A1-205ENST00000470167 RFX1P22670 979 aa6.29□□□□□ -1.4
COL3A1-205ENST00000470167 PAX7P23759 505 aa6.29□□□□□ -1.4
COL3A1-205ENST00000470167 PTPRNQ16849 979 aa6.29□□□□□ -1.4
COL3A1-205ENST00000470167 HSP90B2PQ58FF3 399 aa6.29□□□□□ -1.4
COL3A1-205ENST00000470167 CFAP70Q5T0N1 1121 aa6.29□□□□□ -1.4
COL3A1-205ENST00000470167 GJC2Q5T442 439 aaPredicted RBP6.29□□□□□ -1.4
COL3A1-205ENST00000470167 AMOTL1Q8IY63 956 aa6.29□□□□□ -1.4
COL3A1-205ENST00000470167 FAM160A2Q8N612 972 aaPredicted RBP6.29□□□□□ -1.4
COL3A1-205ENST00000470167 PNMA1Q8ND90 353 aa6.29□□□□□ -1.4
COL3A1-205ENST00000470167 UCN2Q96RP3 112 aa6.29□□□□□ -1.4
COL3A1-205ENST00000470167 FKBPLQ9UIM3 349 aa6.29□□□□□ -1.4
COL3A1-205ENST00000470167 COMMD10Q9Y6G5 202 aa6.29□□□□□ -1.4
COL3A1-205ENST00000470167 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP6.28□□□□□ -1.4
COL3A1-205ENST00000470167 CCDC189A1A4V9 331 aa6.28□□□□□ -1.4
COL3A1-205ENST00000470167 ANKRD33BA6NCL7 494 aa6.28□□□□□ -1.4
COL3A1-205ENST00000470167 RAB11FIP3O75154 756 aa6.28□□□□□ -1.4
COL3A1-205ENST00000470167 PEX14O75381 377 aa6.28□□□□□ -1.4
COL3A1-205ENST00000470167 EIF3JO75822 258 aaKnown RBP6.28□□□□□ -1.4
COL3A1-205ENST00000470167 FBXO45P0C2W1 286 aa6.28□□□□□ -1.4
COL3A1-205ENST00000470167 PAX3P23760 479 aa6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms