RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 NBR1Q14596 966 aa7.73□□□□□ -1.17
PTPN4-209ENST00000469511 COL13A1Q5TAT6 717 aaPredicted RBP7.73□□□□□ -1.17
PTPN4-209ENST00000469511 TFCP2L1Q9NZI6 479 aa7.73□□□□□ -1.17
PTPN4-209ENST00000469511 CCDC7Q96M83 1385 aa7.72□□□□□ -1.17
PTPN4-209ENST00000469511 KIAA1210Q9ULL0 1709 aa7.72□□□□□ -1.17
PTPN4-209ENST00000469511 GRIN3BO60391 1043 aa7.72□□□□□ -1.17
PTPN4-209ENST00000469511 DDX54Q8TDD1 881 aaKnown RBP7.72□□□□□ -1.17
PTPN4-209ENST00000469511 WDR70Q9NW82 654 aa7.72□□□□□ -1.17
PTPN4-209ENST00000469511 NLRP2Q9NX02 1062 aa7.72□□□□□ -1.17
PTPN4-209ENST00000469511 TRIM35Q9UPQ4 493 aa7.72□□□□□ -1.17
PTPN4-209ENST00000469511 TAF1LQ8IZX4 1826 aa7.72□□□□□ -1.17
PTPN4-209ENST00000469511 NSD2O96028 1365 aa7.71□□□□□ -1.17
PTPN4-209ENST00000469511 RAB3GAP2Q9H2M9 1393 aa7.71□□□□□ -1.17
PTPN4-209ENST00000469511 IL2RBP14784 551 aa7.71□□□□□ -1.18
PTPN4-209ENST00000469511 PRIM1P49642 420 aaKnown RBP7.71□□□□□ -1.18
PTPN4-209ENST00000469511 ASTLQ6HA08 431 aaPredicted RBP7.71□□□□□ -1.18
PTPN4-209ENST00000469511 AMIGO3Q86WK7 504 aa7.71□□□□□ -1.18
PTPN4-209ENST00000469511 ERBB3P21860 1342 aa7.71□□□□□ -1.18
PTPN4-209ENST00000469511 CENPJQ9HC77 1338 aaPredicted RBP7.71□□□□□ -1.18
PTPN4-209ENST00000469511 SYTL4Q96C24 671 aaPredicted RBP7.7□□□□□ -1.18
PTPN4-209ENST00000469511 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP7.7□□□□□ -1.183e-7■■■■■ 30.9
PTPN4-209ENST00000469511 MON2Q7Z3U7 1717 aa7.69□□□□□ -1.18
PTPN4-209ENST00000469511 WDR90Q96KV7 1748 aa7.69□□□□□ -1.18
PTPN4-209ENST00000469511 TOGARAM1Q9Y4F4 1720 aa7.69□□□□□ -1.18
PTPN4-209ENST00000469511 ATMINO43313 823 aaPredicted RBP7.69□□□□□ -1.18
PTPN4-209ENST00000469511 FBLN1P23142 703 aa7.69□□□□□ -1.18
PTPN4-209ENST00000469511 ATN1P54259 1190 aaPredicted RBP7.69□□□□□ -1.18
PTPN4-209ENST00000469511 SLC27A3Q5K4L6 730 aa7.69□□□□□ -1.18
PTPN4-209ENST00000469511 SUGP2Q8IX01 1082 aaKnown RBP eCLIP7.69□□□□□ -1.18
PTPN4-209ENST00000469511 KCNH5Q8NCM2 988 aa7.69□□□□□ -1.18
PTPN4-209ENST00000469511 ANKRD24Q8TF21 1146 aa7.69□□□□□ -1.18
PTPN4-209ENST00000469511 C5P01031 1676 aa7.69□□□□□ -1.18
PTPN4-209ENST00000469511 N4BP2Q86UW6 1770 aaPredicted RBP7.69□□□□□ -1.18
PTPN4-209ENST00000469511 USP54Q70EL1 1684 aa7.68□□□□□ -1.18
PTPN4-209ENST00000469511 FAM208AQ9UK61 1670 aaKnown RBP7.68□□□□□ -1.18
PTPN4-209ENST00000469511 IER5LQ5T953 404 aa7.68□□□□□ -1.18
PTPN4-209ENST00000469511 NME9Q86XW9 330 aa7.68□□□□□ -1.18
PTPN4-209ENST00000469511 KCNV2Q8TDN2 545 aa7.68□□□□□ -1.18
PTPN4-209ENST00000469511 KIAA1551Q9HCM1 1747 aa7.67□□□□□ -1.18
PTPN4-209ENST00000469511 UBR3Q6ZT12 1888 aa7.67□□□□□ -1.18
PTPN4-209ENST00000469511 GABBR2O75899 941 aa7.67□□□□□ -1.18
PTPN4-209ENST00000469511 PDE4AP27815 886 aa7.67□□□□□ -1.18
PTPN4-209ENST00000469511 POTEHQ6S545 545 aa7.67□□□□□ -1.18
PTPN4-209ENST00000469511 LTV1Q96GA3 475 aaPredicted RBP7.67□□□□□ -1.18
PTPN4-209ENST00000469511 CCNL1Q9UK58 526 aaPredicted RBP7.67□□□□□ -1.18
PTPN4-209ENST00000469511 IGSF1Q8N6C5 1336 aa7.67□□□□□ -1.18
PTPN4-209ENST00000469511 ITGB4P16144 1822 aa7.66□□□□□ -1.18
PTPN4-209ENST00000469511 APLP1P51693 650 aa7.66□□□□□ -1.18
PTPN4-209ENST00000469511 MFSD10Q14728 455 aa7.66□□□□□ -1.18
PTPN4-209ENST00000469511 PDCD7Q8N8D1 485 aaKnown RBP7.66□□□□□ -1.18
PTPN4-209ENST00000469511 STAC3Q96MF2 364 aa7.66□□□□□ -1.18
PTPN4-209ENST00000469511 CRISPLD2Q9H0B8 497 aa7.66□□□□□ -1.18
PTPN4-209ENST00000469511 NMRK2Q9NPI5 230 aa7.66□□□□□ -1.18
PTPN4-209ENST00000469511 CD2APQ9Y5K6 639 aa7.66□□□□□ -1.18
PTPN4-209ENST00000469511 TTC21AQ8NDW8 1320 aa7.66□□□□□ -1.18
PTPN4-209ENST00000469511 KTN1Q86UP2 1357 aaKnown RBP7.66□□□□□ -1.18
PTPN4-209ENST00000469511 ANKRD36BQ8N2N9 1353 aa7.66□□□□□ -1.18
PTPN4-209ENST00000469511 IRX5P78411 483 aaPredicted RBP7.65□□□□□ -1.18
PTPN4-209ENST00000469511 USP31Q70CQ4 1352 aa7.65□□□□□ -1.18
PTPN4-209ENST00000469511 CD163L1Q9NR16 1453 aa7.65□□□□□ -1.18
PTPN4-209ENST00000469511 C4BP0C0L5 1744 aa7.64□□□□□ -1.19
PTPN4-209ENST00000469511 MEGF6O75095 1541 aa7.64□□□□□ -1.19
PTPN4-209ENST00000469511 SBNO2Q9Y2G9 1366 aa7.64□□□□□ -1.19
PTPN4-209ENST00000469511 E2F4Q16254 413 aa7.64□□□□□ -1.19
PTPN4-209ENST00000469511 MAP2P11137 1827 aaKnown RBP7.64□□□□□ -1.19
PTPN4-209ENST00000469511 CICQ96RK0 1608 aaPredicted RBP7.63□□□□□ -1.19
PTPN4-209ENST00000469511 EVC2Q86UK5 1308 aa7.63□□□□□ -1.19
PTPN4-209ENST00000469511 TOMM70O94826 608 aa7.63□□□□□ -1.19
PTPN4-209ENST00000469511 TNS4Q8IZW8 715 aa7.63□□□□□ -1.19
PTPN4-209ENST00000469511 ARHGEF1Q92888 912 aaKnown RBP7.63□□□□□ -1.19
PTPN4-209ENST00000469511 LARP6Q9BRS8 491 aaKnown RBP7.63□□□□□ -1.19
PTPN4-209ENST00000469511 OCEL1Q9H607 264 aa7.63□□□□□ -1.19
PTPN4-209ENST00000469511 BRCA1P38398 1863 aaKnown RBP7.63□□□□□ -1.19
PTPN4-209ENST00000469511 KIF13BQ9NQT8 1826 aa7.63□□□□□ -1.19
PTPN4-209ENST00000469511 SBF1O95248 1867 aa7.62□□□□□ -1.19
PTPN4-209ENST00000469511 PHF14O94880 888 aa7.62□□□□□ -1.19
PTPN4-209ENST00000469511 PRKCSHP14314 528 aaPredicted RBP7.62□□□□□ -1.19
PTPN4-209ENST00000469511 PRELPP51888 382 aa7.62□□□□□ -1.19
PTPN4-209ENST00000469511 DPY19L2Q6NUT2 758 aa7.62□□□□□ -1.19
PTPN4-209ENST00000469511 USHBP1Q8N6Y0 703 aa7.62□□□□□ -1.19
PTPN4-209ENST00000469511 JMYQ8N9B5 988 aa7.62□□□□□ -1.19
PTPN4-209ENST00000469511 ZCRB1Q8TBF4 217 aaKnown RBP7.62□□□□□ -1.19
PTPN4-209ENST00000469511 IP6K1Q92551 441 aa7.62□□□□□ -1.19
PTPN4-209ENST00000469511 KLRG1Q96E93 195 aa7.62□□□□□ -1.19
PTPN4-209ENST00000469511 SLC12A5Q9H2X9 1139 aa7.62□□□□□ -1.19
PTPN4-209ENST00000469511 USP47Q96K76 1375 aa7.61□□□□□ -1.19
PTPN4-209ENST00000469511 TPRNQ4KMQ1 711 aa7.61□□□□□ -1.19
PTPN4-209ENST00000469511 DDX27Q96GQ7 796 aaKnown RBP7.61□□□□□ -1.19
PTPN4-209ENST00000469511 TMEM121BQ9BXQ6 578 aaPredicted RBP7.61□□□□□ -1.19
PTPN4-209ENST00000469511 PXDNLA1KZ92 1463 aa7.61□□□□□ -1.19
PTPN4-209ENST00000469511 CCDC88AQ3V6T2 1871 aa7.6□□□□□ -1.19
PTPN4-209ENST00000469511 A0A0G2JLW4 131 aa7.6□□□□□ -1.19
PTPN4-209ENST00000469511 NBPF6Q5VWK0 638 aa7.6□□□□□ -1.19
PTPN4-209ENST00000469511 MICALL2Q8IY33 904 aa7.6□□□□□ -1.19
PTPN4-209ENST00000469511 NBPF4Q96M43 638 aa7.6□□□□□ -1.19
PTPN4-209ENST00000469511 GPHNQ9NQX3 736 aaPredicted RBP7.6□□□□□ -1.19
PTPN4-209ENST00000469511 PKD1L3Q7Z443 1732 aa7.6□□□□□ -1.19
PTPN4-209ENST00000469511 PALLDQ8WX93 1383 aa7.59□□□□□ -1.19
PTPN4-209ENST00000469511 MAP3K19Q56UN5 1328 aa7.59□□□□□ -1.19
PTPN4-209ENST00000469511 KCPQ6ZWJ8 1503 aa7.59□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms