RNA–Protein interactions for RNA: ENST00000468421.1

MSX1-202, Transcript of msh homeobox 1, humanhuman

TSL 3

Gene MSX1, Length 509 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-202ENST00000468421 C5P01031 1676 aa13.93□□□□□ -0.18
MSX1-202ENST00000468421 UBR2Q8IWV8 1755 aa13.93□□□□□ -0.18
MSX1-202ENST00000468421 BRWD3Q6RI45 1802 aa13.92□□□□□ -0.18
MSX1-202ENST00000468421 EXOC5O00471 708 aa13.92□□□□□ -0.18
MSX1-202ENST00000468421 DDB1Q16531 1140 aa13.92□□□□□ -0.18
MSX1-202ENST00000468421 C8orf58Q8NAV2 365 aa13.92□□□□□ -0.18
MSX1-202ENST00000468421 SLC52A2Q9HAB3 445 aa13.92□□□□□ -0.18
MSX1-202ENST00000468421 RNF123Q5XPI4 1314 aa13.91□□□□□ -0.18
MSX1-202ENST00000468421 KCNQ3O43525 872 aa13.91□□□□□ -0.18
MSX1-202ENST00000468421 GJD4Q96KN9 370 aaPredicted RBP13.91□□□□□ -0.18
MSX1-202ENST00000468421 BABAM1Q9NWV8 329 aa13.91□□□□□ -0.18
MSX1-202ENST00000468421 TRPC5Q9UL62 973 aaPredicted RBP13.91□□□□□ -0.18
MSX1-202ENST00000468421 CT47B1P0C2W7 299 aaPredicted RBP13.9□□□□□ -0.18
MSX1-202ENST00000468421 BTBD11A6QL63 1104 aa13.89□□□□□ -0.19
MSX1-202ENST00000468421 ELL2O00472 640 aaPredicted RBP13.89□□□□□ -0.19
MSX1-202ENST00000468421 VAMP4O75379 141 aa13.89□□□□□ -0.19
MSX1-202ENST00000468421 BCAR3O75815 825 aa13.89□□□□□ -0.19
MSX1-202ENST00000468421 RARSP54136 660 aaKnown RBP13.89□□□□□ -0.19
MSX1-202ENST00000468421 TWISTNBQ3B726 338 aaPredicted RBP13.89□□□□□ -0.19
MSX1-202ENST00000468421 MARCH10Q8NA82 808 aaPredicted RBP13.89□□□□□ -0.19
MSX1-202ENST00000468421 NFATC2IPQ8NCF5 419 aa13.89□□□□□ -0.19
MSX1-202ENST00000468421 QTRT2Q9H974 415 aaKnown RBP13.89□□□□□ -0.19
MSX1-202ENST00000468421 KAT6BQ8WYB5 2073 aa13.89□□□□□ -0.19
MSX1-202ENST00000468421 LAMB4A4D0S4 1761 aa13.88□□□□□ -0.19
MSX1-202ENST00000468421 SBF2Q86WG5 1849 aa13.88□□□□□ -0.19
MSX1-202ENST00000468421 ERVV-2B6SEH9 535 aa13.88□□□□□ -0.19
MSX1-202ENST00000468421 RRP1P56182 461 aaKnown RBP13.88□□□□□ -0.19
MSX1-202ENST00000468421 CABP4P57796 275 aa13.88□□□□□ -0.19
MSX1-202ENST00000468421 SLC39A6Q13433 755 aa13.88□□□□□ -0.19
MSX1-202ENST00000468421 KCPQ6ZWJ8 1503 aa13.87□□□□□ -0.19
MSX1-202ENST00000468421 EIF4A1P60842 406 aaKnown RBP13.87□□□□□ -0.19
MSX1-202ENST00000468421 BCL2L13Q9BXK5 485 aa13.87□□□□□ -0.19
MSX1-202ENST00000468421 NHSQ6T4R5 1651 aa13.86□□□□□ -0.19
MSX1-202ENST00000468421 CACNA1FO60840 1977 aa13.86□□□□□ -0.19
MSX1-202ENST00000468421 A0A0G2JS52 829 aa13.86□□□□□ -0.19
MSX1-202ENST00000468421 PLIN1O60240 522 aa13.86□□□□□ -0.19
MSX1-202ENST00000468421 IRX6P78412 446 aaPredicted RBP13.86□□□□□ -0.19
MSX1-202ENST00000468421 MYT1Q01538 1121 aa13.86□□□□□ -0.19
MSX1-202ENST00000468421 SSH1Q8WYL5 1049 aa13.86□□□□□ -0.19
MSX1-202ENST00000468421 HEG1Q9ULI3 1381 aa13.85□□□□□ -0.19
MSX1-202ENST00000468421 BCL9O00512 1426 aa13.85□□□□□ -0.19
MSX1-202ENST00000468421 ONECUT3O60422 494 aaPredicted RBP13.85□□□□□ -0.19
MSX1-202ENST00000468421 ZNF790Q6PG37 636 aa13.85□□□□□ -0.19
MSX1-202ENST00000468421 TCERG1O14776 1098 aaKnown RBP13.84□□□□□ -0.19
MSX1-202ENST00000468421 ZNF772Q68DY9 489 aaPredicted RBP13.84□□□□□ -0.19
MSX1-202ENST00000468421 SEPT12Q8IYM1 358 aa13.84□□□□□ -0.19
MSX1-202ENST00000468421 SMC4Q9NTJ3 1288 aa13.84□□□□□ -0.19
MSX1-202ENST00000468421 GTF3C3Q9Y5Q9 886 aa13.84□□□□□ -0.19
MSX1-202ENST00000468421 BTAF1O14981 1849 aa13.83□□□□□ -0.2
MSX1-202ENST00000468421 ALDH1L2Q3SY69 923 aa13.83□□□□□ -0.2
MSX1-202ENST00000468421 ZNF428Q96B54 188 aa13.83□□□□□ -0.2
MSX1-202ENST00000468421 TMOD3Q9NYL9 352 aa13.83□□□□□ -0.2
MSX1-202ENST00000468421 RGS17Q9UGC6 210 aaPredicted RBP13.83□□□□□ -0.2
MSX1-202ENST00000468421 TJP1Q07157 1748 aa13.82□□□□□ -0.2
MSX1-202ENST00000468421 PRAMEF22A3QJZ6 481 aa13.82□□□□□ -0.2
MSX1-202ENST00000468421 FKBP8Q14318 412 aa13.82□□□□□ -0.2
MSX1-202ENST00000468421 MRPL50Q8N5N7 158 aaKnown RBP13.82□□□□□ -0.2
MSX1-202ENST00000468421 PIGBQ92521 554 aa13.82□□□□□ -0.2
MSX1-202ENST00000468421 ACSBG1Q96GR2 724 aa13.82□□□□□ -0.2
MSX1-202ENST00000468421 ZNF496Q96IT1 587 aaPredicted RBP13.82□□□□□ -0.2
MSX1-202ENST00000468421 GIGYF1O75420 1035 aaPredicted RBP13.81□□□□□ -0.2
MSX1-202ENST00000468421 NEFLP07196 543 aa13.81□□□□□ -0.2
MSX1-202ENST00000468421 PRIM1P49642 420 aaKnown RBP13.81□□□□□ -0.2
MSX1-202ENST00000468421 C20orf194Q5TEA3 1177 aa13.81□□□□□ -0.2
MSX1-202ENST00000468421 TTC5Q8N0Z6 440 aa13.81□□□□□ -0.2
MSX1-202ENST00000468421 TNNQ9UQP3 1299 aa13.81□□□□□ -0.2
MSX1-202ENST00000468421 SOS1Q07889 1333 aaPredicted RBP13.81□□□□□ -0.2
MSX1-202ENST00000468421 HOXB7P09629 217 aa13.8□□□□□ -0.2
MSX1-202ENST00000468421 BRPF1P55201 1214 aaPredicted RBP13.8□□□□□ -0.2
MSX1-202ENST00000468421 RBM6P78332 1123 aaKnown RBP13.8□□□□□ -0.2
MSX1-202ENST00000468421 FAM182BQ5T319 152 aa13.8□□□□□ -0.2
MSX1-202ENST00000468421 NECTIN2Q92692 538 aa13.8□□□□□ -0.2
MSX1-202ENST00000468421 FRAT1Q92837 279 aaPredicted RBP13.8□□□□□ -0.2
MSX1-202ENST00000468421 SYTL4Q96C24 671 aaPredicted RBP13.8□□□□□ -0.2
MSX1-202ENST00000468421 CICQ96RK0 1608 aaPredicted RBP13.79□□□□□ -0.2
MSX1-202ENST00000468421 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.79□□□□□ -0.2
MSX1-202ENST00000468421 FMNL2Q96PY5 1086 aa13.79□□□□□ -0.2
MSX1-202ENST00000468421 ATG3Q9NT62 314 aa13.79□□□□□ -0.2
MSX1-202ENST00000468421 ASAP1Q9ULH1 1129 aa13.79□□□□□ -0.2
MSX1-202ENST00000468421 RGS12O14924 1447 aa13.79□□□□□ -0.2
MSX1-202ENST00000468421 N4BP2Q86UW6 1770 aaPredicted RBP13.78□□□□□ -0.2
MSX1-202ENST00000468421 KCNQ2O43526 872 aa13.78□□□□□ -0.2
MSX1-202ENST00000468421 EIF2S2P20042 333 aaKnown RBP13.78□□□□□ -0.2
MSX1-202ENST00000468421 HDGFL1Q5TGJ6 251 aa13.78□□□□□ -0.2
MSX1-202ENST00000468421 POTEAQ6S8J7 498 aa13.78□□□□□ -0.2
MSX1-202ENST00000468421 NOB1Q9ULX3 412 aaKnown RBP13.78□□□□□ -0.2
MSX1-202ENST00000468421 KIF16BQ96L93 1317 aa13.78□□□□□ -0.2
MSX1-202ENST00000468421 LY75O60449 1722 aa13.77□□□□□ -0.21
MSX1-202ENST00000468421 CANXP27824 592 aaKnown RBP13.77□□□□□ -0.21
MSX1-202ENST00000468421 CCDC30Q5VVM6 783 aa13.77□□□□□ -0.21
MSX1-202ENST00000468421 COL5A3P25940 1745 aaPredicted RBP13.76□□□□□ -0.21
MSX1-202ENST00000468421 ZNF831Q5JPB2 1677 aa13.76□□□□□ -0.21
MSX1-202ENST00000468421 PTCD1O75127 700 aaKnown RBP13.76□□□□□ -0.21
MSX1-202ENST00000468421 SNRPA1P09661 255 aaKnown RBP13.76□□□□□ -0.21
MSX1-202ENST00000468421 RLBP1P12271 317 aa13.76□□□□□ -0.21
MSX1-202ENST00000468421 TRIM27P14373 513 aa13.76□□□□□ -0.21
MSX1-202ENST00000468421 ZKSCAN2Q63HK3 967 aa13.76□□□□□ -0.21
MSX1-202ENST00000468421 G2E3Q7L622 706 aa13.76□□□□□ -0.21
MSX1-202ENST00000468421 PTF1AQ7RTS3 328 aa13.76□□□□□ -0.21
MSX1-202ENST00000468421 SLC4A2P04920 1241 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms