RNA–Protein interactions for RNA: ENST00000468253.1

NPHP4-206, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 781 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-206ENST00000468253 TOGARAM1Q9Y4F4 1720 aa26.51■■□□□ 1.83
NPHP4-206ENST00000468253 NFE2L2Q16236 605 aa26.51■■□□□ 1.83
NPHP4-206ENST00000468253 CEMIPQ8WUJ3 1361 aa26.5■■□□□ 1.83
NPHP4-206ENST00000468253 MAPK8IP3Q9UPT6 1336 aa26.5■■□□□ 1.83
NPHP4-206ENST00000468253 KCNQ4P56696 695 aa26.5■■□□□ 1.83
NPHP4-206ENST00000468253 TEFQ10587 303 aa26.5■■□□□ 1.83
NPHP4-206ENST00000468253 ITGB4P16144 1822 aa26.49■■□□□ 1.83
NPHP4-206ENST00000468253 RUNDC1Q96C34 613 aa26.48■■□□□ 1.83
NPHP4-206ENST00000468253 NUP188Q5SRE5 1749 aa26.48■■□□□ 1.83
NPHP4-206ENST00000468253 ATP6V1AP38606 617 aa26.47■■□□□ 1.83
NPHP4-206ENST00000468253 ZNF827Q17R98 1081 aa26.45■■□□□ 1.82
NPHP4-206ENST00000468253 SLC4A9Q96Q91 983 aa26.45■■□□□ 1.82
NPHP4-206ENST00000468253 RBM42Q9BTD8 480 aaKnown RBP26.45■■□□□ 1.82
NPHP4-206ENST00000468253 MRC1P22897 1456 aa26.44■■□□□ 1.82
NPHP4-206ENST00000468253 TFCP2L1Q9NZI6 479 aa26.44■■□□□ 1.82
NPHP4-206ENST00000468253 LY75O60449 1722 aa26.44■■□□□ 1.82
NPHP4-206ENST00000468253 ADAMTS7Q9UKP4 1686 aa26.44■■□□□ 1.82
NPHP4-206ENST00000468253 PTCD1O75127 700 aaKnown RBP26.43■■□□□ 1.82
NPHP4-206ENST00000468253 TMPOP42166 694 aaKnown RBP26.43■■□□□ 1.82
NPHP4-206ENST00000468253 ITPK1Q13572 414 aa26.43■■□□□ 1.82
NPHP4-206ENST00000468253 CCDC184Q52MB2 194 aa26.43■■□□□ 1.82
NPHP4-206ENST00000468253 MCM10Q7L590 875 aa26.43■■□□□ 1.82
NPHP4-206ENST00000468253 PNISRQ8TF01 805 aaKnown RBP26.43■■□□□ 1.82
NPHP4-206ENST00000468253 RC3H1Q5TC82 1133 aaKnown RBP26.42■■□□□ 1.82
NPHP4-206ENST00000468253 VSIG10Q8N0Z9 540 aa26.42■■□□□ 1.82
NPHP4-206ENST00000468253 FLAD1Q8NFF5 587 aa26.42■■□□□ 1.82
NPHP4-206ENST00000468253 SCN11AQ9UI33 1791 aa26.41■■□□□ 1.82
NPHP4-206ENST00000468253 RIPK4P57078 832 aa26.41■■□□□ 1.82
NPHP4-206ENST00000468253 SLC39A6Q13433 755 aa26.41■■□□□ 1.82
NPHP4-206ENST00000468253 TAF7Q15545 349 aaPredicted RBP26.41■■□□□ 1.82
NPHP4-206ENST00000468253 ZNF790Q6PG37 636 aa26.4■■□□□ 1.82
NPHP4-206ENST00000468253 LINC00116Q8NCU8 138 aa26.4■■□□□ 1.82
NPHP4-206ENST00000468253 SLC16A10Q8TF71 515 aa26.4■■□□□ 1.82
NPHP4-206ENST00000468253 MRS2Q9HD23 443 aa26.4■■□□□ 1.82
NPHP4-206ENST00000468253 BTBD11A6QL63 1104 aa26.39■■□□□ 1.82
NPHP4-206ENST00000468253 LMOD3Q0VAK6 560 aa26.39■■□□□ 1.82
NPHP4-206ENST00000468253 DCTN1Q14203 1278 aa26.39■■□□□ 1.82
NPHP4-206ENST00000468253 TTC5Q8N0Z6 440 aa26.39■■□□□ 1.82
NPHP4-206ENST00000468253 PAPPAQ13219 1627 aa26.39■■□□□ 1.81
NPHP4-206ENST00000468253 CCDC146Q8IYE0 955 aa26.38■■□□□ 1.81
NPHP4-206ENST00000468253 AK7Q96M32 723 aa26.37■■□□□ 1.81
NPHP4-206ENST00000468253 TEX13AQ9BXU3 409 aaPredicted RBP26.36■■□□□ 1.81
NPHP4-206ENST00000468253 PDGFDQ9GZP0 370 aaPredicted RBP26.36■■□□□ 1.81
NPHP4-206ENST00000468253 PNPLA7Q6ZV29 1317 aa26.36■■□□□ 1.81
NPHP4-206ENST00000468253 SPON1Q9HCB6 807 aa26.35■■□□□ 1.81
NPHP4-206ENST00000468253 SRCAPQ6ZRS2 3230 aa26.35■■□□□ 1.81
NPHP4-206ENST00000468253 BABAM1Q9NWV8 329 aa26.34■■□□□ 1.81
NPHP4-206ENST00000468253 CNTNAP4Q9C0A0 1308 aa26.34■■□□□ 1.81
NPHP4-206ENST00000468253 SSFA2P28290 1259 aa26.33■■□□□ 1.81
NPHP4-206ENST00000468253 ZNF496Q96IT1 587 aaPredicted RBP26.33■■□□□ 1.81
NPHP4-206ENST00000468253 FMNL2Q96PY5 1086 aa26.33■■□□□ 1.81
NPHP4-206ENST00000468253 MTFR1LQ9H019 292 aa26.33■■□□□ 1.81
NPHP4-206ENST00000468253 COL23A1Q86Y22 540 aaPredicted RBP26.32■■□□□ 1.8
NPHP4-206ENST00000468253 ZNF831Q5JPB2 1677 aa26.31■■□□□ 1.8
NPHP4-206ENST00000468253 RPS6KA4O75676 772 aa26.31■■□□□ 1.8
NPHP4-206ENST00000468253 APAF1O14727 1248 aa26.3■■□□□ 1.8
NPHP4-206ENST00000468253 STARD3NLO95772 234 aa26.3■■□□□ 1.8
NPHP4-206ENST00000468253 CYP19A1P11511 503 aaPredicted RBP26.3■■□□□ 1.8
NPHP4-206ENST00000468253 NEUROD2Q15784 382 aa26.3■■□□□ 1.8
NPHP4-206ENST00000468253 NCBP3Q53F19 620 aaKnown RBP26.3■■□□□ 1.8
NPHP4-206ENST00000468253 DNAJC10Q8IXB1 793 aa26.3■■□□□ 1.8
NPHP4-206ENST00000468253 TRIM35Q9UPQ4 493 aa26.3■■□□□ 1.8
NPHP4-206ENST00000468253 RRP7AQ9Y3A4 280 aaKnown RBP26.3■■□□□ 1.8
NPHP4-206ENST00000468253 RTCBQ9Y3I0 505 aaKnown RBP26.3■■□□□ 1.8
NPHP4-206ENST00000468253 GNPATO15228 680 aa26.29■■□□□ 1.8
NPHP4-206ENST00000468253 KCNQ3O43525 872 aa26.29■■□□□ 1.8
NPHP4-206ENST00000468253 ADRA2BP18089 450 aa26.29■■□□□ 1.8
NPHP4-206ENST00000468253 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP26.28■■□□□ 1.8
NPHP4-206ENST00000468253 ZBTB7AO95365 584 aa26.28■■□□□ 1.8
NPHP4-206ENST00000468253 CRKLP46109 303 aaKnown RBP26.28■■□□□ 1.8
NPHP4-206ENST00000468253 INTS5Q6P9B9 1019 aaKnown RBP26.28■■□□□ 1.8
NPHP4-206ENST00000468253 THUMPD2Q9BTF0 503 aaKnown RBP26.28■■□□□ 1.8
NPHP4-206ENST00000468253 HEG1Q9ULI3 1381 aa26.28■■□□□ 1.8
NPHP4-206ENST00000468253 TRAPPC3LQ5T215 181 aa26.27■■□□□ 1.8
NPHP4-206ENST00000468253 KCPQ6ZWJ8 1503 aa26.26■■□□□ 1.79
NPHP4-206ENST00000468253 MIS18AQ9NYP9 233 aa26.26■■□□□ 1.79
NPHP4-206ENST00000468253 MSH5O43196 834 aa26.25■■□□□ 1.79
NPHP4-206ENST00000468253 SNRPA1P09661 255 aaKnown RBP26.25■■□□□ 1.79
NPHP4-206ENST00000468253 AMIGO3Q86WK7 504 aa26.25■■□□□ 1.79
NPHP4-206ENST00000468253 CCDC87Q9NVE4 849 aa26.25■■□□□ 1.79
NPHP4-206ENST00000468253 ATF5Q9Y2D1 282 aaPredicted RBP26.25■■□□□ 1.79
NPHP4-206ENST00000468253 C4BP0C0L5 1744 aa26.25■■□□□ 1.79
NPHP4-206ENST00000468253 CCER2I3L3R5 266 aa26.24■■□□□ 1.79
NPHP4-206ENST00000468253 PTGER2P43116 358 aa26.24■■□□□ 1.79
NPHP4-206ENST00000468253 C5P01031 1676 aa26.24■■□□□ 1.79
NPHP4-206ENST00000468253 SGIP1Q9BQI5 828 aa26.23■■□□□ 1.79
NPHP4-206ENST00000468253 TAF1LQ8IZX4 1826 aa26.23■■□□□ 1.79
NPHP4-206ENST00000468253 CHL1O00533 1208 aa26.22■■□□□ 1.79
NPHP4-206ENST00000468253 CCDC27Q2M243 656 aa26.22■■□□□ 1.79
NPHP4-206ENST00000468253 DIEXFQ68CQ4 756 aaKnown RBP26.22■■□□□ 1.79
NPHP4-206ENST00000468253 ARHGEF1Q92888 912 aaKnown RBP26.22■■□□□ 1.79
NPHP4-206ENST00000468253 SIPA1L3O60292 1781 aaPredicted RBP26.21■■□□□ 1.79
NPHP4-206ENST00000468253 CASZ1Q86V15 1759 aa26.21■■□□□ 1.79
NPHP4-206ENST00000468253 PHF14O94880 888 aa26.21■■□□□ 1.79
NPHP4-206ENST00000468253 EIF4A1P60842 406 aaKnown RBP26.21■■□□□ 1.79
NPHP4-206ENST00000468253 CALD1Q05682 793 aaKnown RBP26.21■■□□□ 1.79
NPHP4-206ENST00000468253 TSPYL4Q9UJ04 414 aa26.2■■□□□ 1.78
NPHP4-206ENST00000468253 QSER1Q2KHR3 1735 aa26.19■■□□□ 1.78
NPHP4-206ENST00000468253 SMIM5Q71RC9 77 aa26.19■■□□□ 1.78
NPHP4-206ENST00000468253 USP16Q9Y5T5 823 aa26.19■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 111.9 ms