RNA–Protein interactions for RNA: ENST00000466410.5

LIMS2-212, Transcript of LIM zinc finger domain containing 2, humanhuman

TSL 2

Gene LIMS2, Length 2,592 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS2-212ENST00000466410 HOXC9P31274 260 aa23.82■■□□□ 1.4
LIMS2-212ENST00000466410 ERC2O15083 957 aa23.81■■□□□ 1.4
LIMS2-212ENST00000466410 CCDC30Q5VVM6 783 aa23.81■■□□□ 1.4
LIMS2-212ENST00000466410 TSHZ3Q63HK5 1081 aa23.81■■□□□ 1.4
LIMS2-212ENST00000466410 IL17REQ8NFR9 667 aa23.8■■□□□ 1.4
LIMS2-212ENST00000466410 PNMA6EA0A0J9YXQ4 647 aa23.8■■□□□ 1.4
LIMS2-212ENST00000466410 LRRC37A3O60309 1634 aa23.8■■□□□ 1.4
LIMS2-212ENST00000466410 GOLGA6L22H0YM25 854 aa23.79■■□□□ 1.4
LIMS2-212ENST00000466410 ST18O60284 1047 aa23.78■■□□□ 1.4
LIMS2-212ENST00000466410 PKP1Q13835 747 aa23.78■■□□□ 1.4
LIMS2-212ENST00000466410 LTV1Q96GA3 475 aaPredicted RBP23.78■■□□□ 1.4
LIMS2-212ENST00000466410 SALL3Q9BXA9 1300 aa23.78■■□□□ 1.4
LIMS2-212ENST00000466410 FAM208AQ9UK61 1670 aaKnown RBP23.78■■□□□ 1.4
LIMS2-212ENST00000466410 NWD1Q149M9 1564 aa23.77■■□□□ 1.4
LIMS2-212ENST00000466410 GNAI3P08754 354 aa23.77■■□□□ 1.4
LIMS2-212ENST00000466410 NUCB2P80303 420 aa23.77■■□□□ 1.4
LIMS2-212ENST00000466410 LRRCC1Q9C099 1032 aa23.77■■□□□ 1.4
LIMS2-212ENST00000466410 CYP2E1P05181 493 aaPredicted RBP23.76■■□□□ 1.39
LIMS2-212ENST00000466410 ZGPATQ8N5A5 531 aaKnown RBP23.76■■□□□ 1.39
LIMS2-212ENST00000466410 XRN1Q8IZH2 1706 aaKnown RBP23.76■■□□□ 1.39
LIMS2-212ENST00000466410 KCNA6P17658 529 aa23.76■■□□□ 1.39
LIMS2-212ENST00000466410 ATP8B2P98198 1209 aa23.76■■□□□ 1.39
LIMS2-212ENST00000466410 MAP3K5Q99683 1374 aa23.76■■□□□ 1.39
LIMS2-212ENST00000466410 ABTB2Q8N961 1025 aa23.75■■□□□ 1.39
LIMS2-212ENST00000466410 MARF1Q9Y4F3 1742 aaKnown RBP23.75■■□□□ 1.39
LIMS2-212ENST00000466410 DDX49Q9Y6V7 483 aaKnown RBP23.75■■□□□ 1.39
LIMS2-212ENST00000466410 TAF7Q15545 349 aaPredicted RBP23.74■■□□□ 1.39
LIMS2-212ENST00000466410 LRRFIP2Q9Y608 721 aaKnown RBP23.74■■□□□ 1.39
LIMS2-212ENST00000466410 MX1P20591 662 aa23.74■■□□□ 1.39
LIMS2-212ENST00000466410 KLHL40Q2TBA0 621 aa23.74■■□□□ 1.39
LIMS2-212ENST00000466410 MCTP1Q6DN14 999 aa23.74■■□□□ 1.39
LIMS2-212ENST00000466410 ANKARQ7Z5J8 1434 aa23.73■■□□□ 1.39
LIMS2-212ENST00000466410 USHBP1Q8N6Y0 703 aa23.73■■□□□ 1.39
LIMS2-212ENST00000466410 IBTKQ9P2D0 1353 aaPredicted RBP23.73■■□□□ 1.39
LIMS2-212ENST00000466410 CWC22Q9HCG8 908 aaKnown RBP23.73■■□□□ 1.39
LIMS2-212ENST00000466410 CACNA1FO60840 1977 aa23.72■■□□□ 1.39
LIMS2-212ENST00000466410 ESYT1Q9BSJ8 1104 aa23.72■■□□□ 1.39
LIMS2-212ENST00000466410 USP44Q9H0E7 712 aa23.72■■□□□ 1.39
LIMS2-212ENST00000466410 TUBGCP6Q96RT7 1819 aa23.71■■□□□ 1.39
LIMS2-212ENST00000466410 C14orf37Q86TY3 774 aa23.69■■□□□ 1.38
LIMS2-212ENST00000466410 PHAXQ9H814 394 aaKnown RBP23.69■■□□□ 1.38
LIMS2-212ENST00000466410 SOS1Q07889 1333 aaPredicted RBP23.69■■□□□ 1.38
LIMS2-212ENST00000466410 NEK4P51957 841 aa23.69■■□□□ 1.38
LIMS2-212ENST00000466410 HDGFL1Q5TGJ6 251 aa23.69■■□□□ 1.38
LIMS2-212ENST00000466410 RILPL2Q969X0 211 aa23.69■■□□□ 1.38
LIMS2-212ENST00000466410 ZDHHC9Q9Y397 364 aa23.69■■□□□ 1.38
LIMS2-212ENST00000466410 TRIM6-TRIM34B2RNG4 842 aa23.68■■□□□ 1.38
LIMS2-212ENST00000466410 LMBRD1Q9NUN5 540 aa23.68■■□□□ 1.38
LIMS2-212ENST00000466410 BABAM1Q9NWV8 329 aa23.68■■□□□ 1.38
LIMS2-212ENST00000466410 CHMLP26374 656 aa23.68■■□□□ 1.38
LIMS2-212ENST00000466410 UBTFL1P0CB47 393 aaPredicted RBP23.67■■□□□ 1.38
LIMS2-212ENST00000466410 STAP2Q9UGK3 403 aa23.67■■□□□ 1.38
LIMS2-212ENST00000466410 UNC5CLQ8IV45 518 aa23.67■■□□□ 1.38
LIMS2-212ENST00000466410 PALD1Q9ULE6 856 aa23.67■■□□□ 1.38
LIMS2-212ENST00000466410 CLCN1P35523 988 aa23.66■■□□□ 1.38
LIMS2-212ENST00000466410 TMX3Q96JJ7 454 aa23.65■■□□□ 1.38
LIMS2-212ENST00000466410 IL1RAPL2Q9NP60 686 aa23.65■■□□□ 1.38
LIMS2-212ENST00000466410 PXDNLA1KZ92 1463 aa23.65■■□□□ 1.38
LIMS2-212ENST00000466410 N4BP2Q86UW6 1770 aaPredicted RBP23.65■■□□□ 1.38
LIMS2-212ENST00000466410 ANO2Q9NQ90 1003 aa23.65■■□□□ 1.38
LIMS2-212ENST00000466410 USP54Q70EL1 1684 aa23.65■■□□□ 1.38
LIMS2-212ENST00000466410 NCLP19338 710 aaKnown RBP23.64■■□□□ 1.37
LIMS2-212ENST00000466410 SRCIN1Q9C0H9 1055 aa23.64■■□□□ 1.37
LIMS2-212ENST00000466410 EIF2S2P20042 333 aaKnown RBP23.63■■□□□ 1.37
LIMS2-212ENST00000466410 CAVIN1Q6NZI2 390 aaKnown RBP23.63■■□□□ 1.37
LIMS2-212ENST00000466410 SSH3Q8TE77 659 aa23.63■■□□□ 1.37
LIMS2-212ENST00000466410 CHAMP1Q96JM3 812 aa23.63■■□□□ 1.37
LIMS2-212ENST00000466410 ERBB4Q15303 1308 aa23.63■■□□□ 1.37
LIMS2-212ENST00000466410 SETD1BQ9UPS6 1966 aaKnown RBP23.63■■□□□ 1.37
LIMS2-212ENST00000466410 ADAMTSL3P82987 1691 aa23.63■■□□□ 1.37
LIMS2-212ENST00000466410 LGR6Q9HBX8 967 aa23.62■■□□□ 1.37
LIMS2-212ENST00000466410 PRPF40AO75400 957 aaKnown RBP23.62■■□□□ 1.37
LIMS2-212ENST00000466410 NBPF6Q5VWK0 638 aa23.62■■□□□ 1.37
LIMS2-212ENST00000466410 NBPF4Q96M43 638 aa23.62■■□□□ 1.37
LIMS2-212ENST00000466410 PHF8Q9UPP1 1060 aa23.62■■□□□ 1.37
LIMS2-212ENST00000466410 CEMIPQ8WUJ3 1361 aa23.62■■□□□ 1.37
LIMS2-212ENST00000466410 ESPNB1AK53 854 aa23.61■■□□□ 1.37
LIMS2-212ENST00000466410 MCCP23508 829 aa23.61■■□□□ 1.37
LIMS2-212ENST00000466410 PPP1R42Q7Z4L9 355 aa23.61■■□□□ 1.37
LIMS2-212ENST00000466410 NUTM1Q86Y26 1132 aa23.61■■□□□ 1.37
LIMS2-212ENST00000466410 RBM33Q96EV2 1170 aaKnown RBP23.61■■□□□ 1.37
LIMS2-212ENST00000466410 LTN1O94822 1766 aa23.61■■□□□ 1.37
LIMS2-212ENST00000466410 IP6K1Q92551 441 aa23.61■■□□□ 1.37
LIMS2-212ENST00000466410 NASPP49321 788 aaPredicted RBP23.6■■□□□ 1.37
LIMS2-212ENST00000466410 TRIM44Q96DX7 344 aaPredicted RBP23.6■■□□□ 1.37
LIMS2-212ENST00000466410 IL25Q9H293 177 aa23.6■■□□□ 1.37
LIMS2-212ENST00000466410 ZNF445P59923 1031 aa23.6■■□□□ 1.37
LIMS2-212ENST00000466410 EIF4A1P60842 406 aaKnown RBP23.6■■□□□ 1.37
LIMS2-212ENST00000466410 FOXD4L5Q5VV16 416 aaPredicted RBP23.6■■□□□ 1.37
LIMS2-212ENST00000466410 FOXD4L4Q8WXT5 416 aaPredicted RBP23.6■■□□□ 1.37
LIMS2-212ENST00000466410 ZNF142P52746 1687 aaPredicted RBP23.59■■□□□ 1.37
LIMS2-212ENST00000466410 SURF6O75683 361 aaKnown RBP23.59■■□□□ 1.37
LIMS2-212ENST00000466410 ZSCAN23Q3MJ62 389 aa23.59■■□□□ 1.37
LIMS2-212ENST00000466410 MCM2P49736 904 aa23.59■■□□□ 1.37
LIMS2-212ENST00000466410 ANAPC15P60006 121 aa23.59■■□□□ 1.37
LIMS2-212ENST00000466410 AOX1Q06278 1338 aa23.58■■□□□ 1.37
LIMS2-212ENST00000466410 KCNQ3O43525 872 aa23.58■■□□□ 1.37
LIMS2-212ENST00000466410 POLA2Q14181 598 aa23.58■■□□□ 1.37
LIMS2-212ENST00000466410 NOL8Q76FK4 1167 aaKnown RBP23.58■■□□□ 1.37
LIMS2-212ENST00000466410 GPT2Q8TD30 523 aa23.58■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms