RNA–Protein interactions for RNA: ENST00000465514.1

USP39-212, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 660 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-212ENST00000465514 SMARCC1Q92922 1105 aaPredicted RBP13.79□□□□□ -0.2
USP39-212ENST00000465514 CGNL1Q0VF96 1302 aa13.79□□□□□ -0.2
USP39-212ENST00000465514 MAP3K19Q56UN5 1328 aa13.79□□□□□ -0.2
USP39-212ENST00000465514 PCDH11XQ9BZA7 1347 aa13.79□□□□□ -0.2
USP39-212ENST00000465514 PCDH11YQ9BZA8 1340 aa13.79□□□□□ -0.2
USP39-212ENST00000465514 CCDC88AQ3V6T2 1871 aa13.78□□□□□ -0.2
USP39-212ENST00000465514 RAPGEF4Q8WZA2 1011 aa13.77□□□□□ -0.21
USP39-212ENST00000465514 CARD11Q9BXL7 1154 aa13.77□□□□□ -0.21
USP39-212ENST00000465514 A0A1W2PP64 1363 aa13.76□□□□□ -0.21
USP39-212ENST00000465514 AMPHP49418 695 aa13.76□□□□□ -0.21
USP39-212ENST00000465514 FAM161AQ3B820 660 aa13.76□□□□□ -0.21
USP39-212ENST00000465514 NBPF6Q5VWK0 638 aa13.76□□□□□ -0.21
USP39-212ENST00000465514 HDGFL2Q7Z4V5 671 aaPredicted RBP13.76□□□□□ -0.21
USP39-212ENST00000465514 TMC1Q8TDI8 760 aa13.76□□□□□ -0.21
USP39-212ENST00000465514 NBPF4Q96M43 638 aa13.76□□□□□ -0.21
USP39-212ENST00000465514 CCDC87Q9NVE4 849 aa13.76□□□□□ -0.21
USP39-212ENST00000465514 LOC102724428A0A0B4J2F2 783 aa13.75□□□□□ -0.21
USP39-212ENST00000465514 KCNA3P22001 575 aa13.75□□□□□ -0.21
USP39-212ENST00000465514 FBLN1P23142 703 aa13.75□□□□□ -0.21
USP39-212ENST00000465514 SIK1P57059 783 aa13.75□□□□□ -0.21
USP39-212ENST00000465514 PIGBQ92521 554 aa13.75□□□□□ -0.21
USP39-212ENST00000465514 DCAF5Q96JK2 942 aa13.75□□□□□ -0.21
USP39-212ENST00000465514 COL5A3P25940 1745 aaPredicted RBP13.75□□□□□ -0.21
USP39-212ENST00000465514 RTL1A6NKG5 1358 aa13.74□□□□□ -0.21
USP39-212ENST00000465514 FOXN1O15353 648 aa13.74□□□□□ -0.21
USP39-212ENST00000465514 CYP27B1O15528 508 aa13.74□□□□□ -0.21
USP39-212ENST00000465514 TATP17735 454 aaPredicted RBP13.74□□□□□ -0.21
USP39-212ENST00000465514 ITPK1Q13572 414 aa13.74□□□□□ -0.21
USP39-212ENST00000465514 RNF39Q9H2S5 420 aa13.74□□□□□ -0.21
USP39-212ENST00000465514 SMG6Q86US8 1419 aaKnown RBP13.73□□□□□ -0.21
USP39-212ENST00000465514 TMF1P82094 1093 aa13.73□□□□□ -0.21
USP39-212ENST00000465514 SLC12A5Q9H2X9 1139 aa13.73□□□□□ -0.21
USP39-212ENST00000465514 PIM2Q9P1W9 311 aa13.73□□□□□ -0.21
USP39-212ENST00000465514 DALRD3Q5D0E6 543 aaKnown RBP13.72□□□□□ -0.21
USP39-212ENST00000465514 NLGN1Q8N2Q7 840 aa13.72□□□□□ -0.21
USP39-212ENST00000465514 MKRN1Q9UHC7 482 aaKnown RBP13.72□□□□□ -0.21
USP39-212ENST00000465514 TONSLQ96HA7 1378 aa13.71□□□□□ -0.21
USP39-212ENST00000465514 VEGFAP15692 232 aaPredicted RBP13.71□□□□□ -0.21
USP39-212ENST00000465514 PRDM10Q9NQV6 1147 aa13.71□□□□□ -0.21
USP39-212ENST00000465514 TERF2IPQ9NYB0 399 aa13.71□□□□□ -0.21
USP39-212ENST00000465514 PARP3Q9Y6F1 533 aa13.71□□□□□ -0.21
USP39-212ENST00000465514 ZNF831Q5JPB2 1677 aa13.71□□□□□ -0.21
USP39-212ENST00000465514 KDM6AO15550 1401 aaPredicted RBP13.71□□□□□ -0.22
USP39-212ENST00000465514 VIRMAQ69YN4 1812 aaKnown RBP13.71□□□□□ -0.22
USP39-212ENST00000465514 MYH14Q7Z406 1995 aaKnown RBP13.71□□□□□ -0.22
USP39-212ENST00000465514 ZC3H4Q9UPT8 1303 aaKnown RBP13.7□□□□□ -0.22
USP39-212ENST00000465514 ATP6V1AP38606 617 aa13.7□□□□□ -0.22
USP39-212ENST00000465514 RASSF7Q02833 373 aa13.7□□□□□ -0.22
USP39-212ENST00000465514 COG3Q96JB2 828 aa13.7□□□□□ -0.22
USP39-212ENST00000465514 DLEC1Q9Y238 1755 aa13.7□□□□□ -0.22
USP39-212ENST00000465514 GYS1P13807 737 aa13.69□□□□□ -0.22
USP39-212ENST00000465514 RRS1Q15050 365 aaKnown RBP13.69□□□□□ -0.22
USP39-212ENST00000465514 TRAPPC3LQ5T215 181 aa13.69□□□□□ -0.22
USP39-212ENST00000465514 PUS7Q96PZ0 661 aaKnown RBP13.69□□□□□ -0.22
USP39-212ENST00000465514 ASAP1Q9ULH1 1129 aa13.69□□□□□ -0.22
USP39-212ENST00000465514 RTCBQ9Y3I0 505 aaKnown RBP13.69□□□□□ -0.22
USP39-212ENST00000465514 GLTPD2A6NH11 291 aa13.68□□□□□ -0.22
USP39-212ENST00000465514 CREBZFQ9NS37 354 aa13.68□□□□□ -0.22
USP39-212ENST00000465514 KDRP35968 1356 aa13.68□□□□□ -0.22
USP39-212ENST00000465514 DICER1Q9UPY3 1922 aaKnown RBP13.67□□□□□ -0.22
USP39-212ENST00000465514 CHRNA5P30532 468 aa13.67□□□□□ -0.22
USP39-212ENST00000465514 ARHGEF1Q92888 912 aaKnown RBP13.67□□□□□ -0.22
USP39-212ENST00000465514 ABHD8Q96I13 439 aa13.67□□□□□ -0.22
USP39-212ENST00000465514 TMOD3Q9NYL9 352 aa13.67□□□□□ -0.22
USP39-212ENST00000465514 CTCFP49711 727 aaPredicted RBP13.66□□□□□ -0.22
USP39-212ENST00000465514 AIDAQ96BJ3 306 aa13.66□□□□□ -0.22
USP39-212ENST00000465514 TESK2Q96S53 571 aa13.66□□□□□ -0.22
USP39-212ENST00000465514 CNTNAP1P78357 1384 aa13.66□□□□□ -0.22
USP39-212ENST00000465514 AFDNP55196 1824 aaKnown RBP13.66□□□□□ -0.22
USP39-212ENST00000465514 TNRC18O15417 2968 aaPredicted RBP13.65□□□□□ -0.22
USP39-212ENST00000465514 KIF20BQ96Q89 1820 aa13.65□□□□□ -0.22
USP39-212ENST00000465514 ST20-MTHFSA0A0A6YYL1 179 aa13.65□□□□□ -0.22
USP39-212ENST00000465514 LMNB1P20700 586 aa13.65□□□□□ -0.22
USP39-212ENST00000465514 RFC4P35249 363 aa13.65□□□□□ -0.22
USP39-212ENST00000465514 NKX1-1Q15270 411 aaPredicted RBP13.65□□□□□ -0.22
USP39-212ENST00000465514 INSRP06213 1382 aa13.64□□□□□ -0.23
USP39-212ENST00000465514 LBX1P52954 281 aa13.64□□□□□ -0.23
USP39-212ENST00000465514 MLLT1Q03111 559 aaPredicted RBP13.64□□□□□ -0.23
USP39-212ENST00000465514 ATG3Q9NT62 314 aa13.64□□□□□ -0.23
USP39-212ENST00000465514 PDE4DIPQ5VU43 2346 aa13.63□□□□□ -0.23
USP39-212ENST00000465514 POTECB2RU33 542 aa13.63□□□□□ -0.23
USP39-212ENST00000465514 DDR1Q08345 913 aa13.63□□□□□ -0.23
USP39-212ENST00000465514 HSP90AB2PQ58FF8 381 aa13.63□□□□□ -0.23
USP39-212ENST00000465514 SLC4A9Q96Q91 983 aa13.62□□□□□ -0.23
USP39-212ENST00000465514 NCAPD2Q15021 1401 aa13.62□□□□□ -0.23
USP39-212ENST00000465514 CNTNAP4Q9C0A0 1308 aa13.62□□□□□ -0.23
USP39-212ENST00000465514 FLT4P35916 1363 aa13.61□□□□□ -0.23
USP39-212ENST00000465514 ADAMTS7Q9UKP4 1686 aa13.61□□□□□ -0.23
USP39-212ENST00000465514 SLC24A1O60721 1099 aa13.61□□□□□ -0.23
USP39-212ENST00000465514 NPM3O75607 178 aaKnown RBP13.61□□□□□ -0.23
USP39-212ENST00000465514 RPS6KA4O75676 772 aa13.6□□□□□ -0.23
USP39-212ENST00000465514 FKBP8Q14318 412 aa13.6□□□□□ -0.23
USP39-212ENST00000465514 RC3H1Q5TC82 1133 aaKnown RBP13.6□□□□□ -0.23
USP39-212ENST00000465514 CHADLQ6NUI6 762 aa13.6□□□□□ -0.23
USP39-212ENST00000465514 RBM42Q9BTD8 480 aaKnown RBP13.6□□□□□ -0.23
USP39-212ENST00000465514 SRP68Q9UHB9 627 aaKnown RBP13.6□□□□□ -0.23
USP39-212ENST00000465514 SPG7Q9UQ90 795 aa13.6□□□□□ -0.23
USP39-212ENST00000465514 FER1L6Q2WGJ9 1857 aa13.59□□□□□ -0.23
USP39-212ENST00000465514 TJP1Q07157 1748 aa13.59□□□□□ -0.23
USP39-212ENST00000465514 NRXN2Q9P2S2 1712 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms