RNA–Protein interactions for RNA: ENST00000463727.1

PTPRE-205, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 1 (best)

Gene PTPRE, Length 3,944 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-205ENST00000463727 ATP7BP35670 1465 aa12.58□□□□□ -0.4
PTPRE-205ENST00000463727 PIK3R4Q99570 1358 aa12.58□□□□□ -0.4
PTPRE-205ENST00000463727 PSME1Q06323 249 aa12.57□□□□□ -0.4
PTPRE-205ENST00000463727 DRC7Q8IY82 874 aa12.57□□□□□ -0.4
PTPRE-205ENST00000463727 MED14O60244 1454 aa12.57□□□□□ -0.4
PTPRE-205ENST00000463727 AATKQ6ZMQ8 1374 aa12.57□□□□□ -0.4
PTPRE-205ENST00000463727 GAS2L3Q86XJ1 694 aa12.57□□□□□ -0.4
PTPRE-205ENST00000463727 ESYT1Q9BSJ8 1104 aa12.57□□□□□ -0.4
PTPRE-205ENST00000463727 ARID3AQ99856 593 aa12.57□□□□□ -0.4
PTPRE-205ENST00000463727 FAM13BQ9NYF5 915 aa12.57□□□□□ -0.4
PTPRE-205ENST00000463727 PTCH1Q13635 1447 aa12.57□□□□□ -0.4
PTPRE-205ENST00000463727 PPLO60437 1756 aa12.57□□□□□ -0.4
PTPRE-205ENST00000463727 VSIG10Q8N0Z9 540 aa12.56□□□□□ -0.4
PTPRE-205ENST00000463727 G3BP1Q13283 466 aaKnown RBP eCLIP12.56□□□□□ -0.4
PTPRE-205ENST00000463727 KIF1BPQ96EK5 621 aa12.56□□□□□ -0.4
PTPRE-205ENST00000463727 CWC27Q6UX04 472 aaKnown RBP12.56□□□□□ -0.4
PTPRE-205ENST00000463727 MAP3K19Q56UN5 1328 aa12.56□□□□□ -0.4
PTPRE-205ENST00000463727 FIBPO43427 364 aa12.56□□□□□ -0.4
PTPRE-205ENST00000463727 RAB11FIP3O75154 756 aa12.56□□□□□ -0.4
PTPRE-205ENST00000463727 ATP8B2P98198 1209 aa12.56□□□□□ -0.4
PTPRE-205ENST00000463727 ZRSR1Q15695 479 aaKnown RBP12.56□□□□□ -0.4
PTPRE-205ENST00000463727 RTL1A6NKG5 1358 aa12.55□□□□□ -0.4
PTPRE-205ENST00000463727 DDX58O95786 925 aaKnown RBP12.55□□□□□ -0.4
PTPRE-205ENST00000463727 ZC3H13Q5T200 1668 aaKnown RBP12.55□□□□□ -0.4
PTPRE-205ENST00000463727 NLRP1Q9C000 1473 aa12.55□□□□□ -0.4
PTPRE-205ENST00000463727 KIAA0232Q92628 1395 aa12.55□□□□□ -0.4
PTPRE-205ENST00000463727 TNRQ92752 1358 aa12.55□□□□□ -0.4
PTPRE-205ENST00000463727 CHMP3Q9Y3E7 222 aa12.55□□□□□ -0.4
PTPRE-205ENST00000463727 NEXMIFQ5QGS0 1516 aa12.55□□□□□ -0.4
PTPRE-205ENST00000463727 TTC21AQ8NDW8 1320 aa12.55□□□□□ -0.4
PTPRE-205ENST00000463727 RRP9O43818 475 aaKnown RBP12.55□□□□□ -0.4
PTPRE-205ENST00000463727 MYO3AQ8NEV4 1616 aa12.55□□□□□ -0.4
PTPRE-205ENST00000463727 GOLGA6L6A8MZA4 724 aa12.54□□□□□ -0.4
PTPRE-205ENST00000463727 PRIM1P49642 420 aaKnown RBP12.54□□□□□ -0.4
PTPRE-205ENST00000463727 ANAPC15P60006 121 aa12.54□□□□□ -0.4
PTPRE-205ENST00000463727 NEXNQ0ZGT2 675 aa12.54□□□□□ -0.4
PTPRE-205ENST00000463727 THEMISQ8N1K5 641 aaPredicted RBP12.54□□□□□ -0.4
PTPRE-205ENST00000463727 EYA1Q99502 592 aa12.54□□□□□ -0.4
PTPRE-205ENST00000463727 LRRC7Q96NW7 1537 aa12.54□□□□□ -0.4
PTPRE-205ENST00000463727 HTATSF1O43719 755 aaKnown RBP12.54□□□□□ -0.4
PTPRE-205ENST00000463727 RNF20Q5VTR2 975 aa12.54□□□□□ -0.4
PTPRE-205ENST00000463727 PIK3C2BO00750 1634 aa12.54□□□□□ -0.4
PTPRE-205ENST00000463727 METP08581 1390 aa12.54□□□□□ -0.4
PTPRE-205ENST00000463727 AIMP1Q12904 312 aaKnown RBP12.54□□□□□ -0.4
PTPRE-205ENST00000463727 PPP1R42Q7Z4L9 355 aa12.54□□□□□ -0.4
PTPRE-205ENST00000463727 USHBP1Q8N6Y0 703 aa12.54□□□□□ -0.4
PTPRE-205ENST00000463727 GDPD2Q9HCC8 539 aa12.54□□□□□ -0.4
PTPRE-205ENST00000463727 PTPRMP28827 1452 aa12.53□□□□□ -0.4
PTPRE-205ENST00000463727 FLT4P35916 1363 aa12.53□□□□□ -0.4
PTPRE-205ENST00000463727 KIF2CQ99661 725 aa12.53□□□□□ -0.4
PTPRE-205ENST00000463727 LETM1O95202 739 aaPredicted RBP12.53□□□□□ -0.4
PTPRE-205ENST00000463727 HSP90B1P14625 803 aaKnown RBP12.53□□□□□ -0.4
PTPRE-205ENST00000463727 PLEKHO1Q53GL0 409 aaPredicted RBP12.53□□□□□ -0.4
PTPRE-205ENST00000463727 ZNF530Q6P9A1 599 aaPredicted RBP12.53□□□□□ -0.4
PTPRE-205ENST00000463727 LRSAM1Q6UWE0 723 aa12.53□□□□□ -0.4
PTPRE-205ENST00000463727 LMBRD1Q9NUN5 540 aa12.53□□□□□ -0.4
PTPRE-205ENST00000463727 CDK12Q9NYV4 1490 aaPredicted RBP12.52□□□□□ -0.4
PTPRE-205ENST00000463727 SIRT1Q96EB6 747 aa12.52□□□□□ -0.4
PTPRE-205ENST00000463727 CYP46A1Q9Y6A2 500 aa12.52□□□□□ -0.4
PTPRE-205ENST00000463727 GLRX3O76003 335 aaKnown RBP12.52□□□□□ -0.41
PTPRE-205ENST00000463727 CSB-PGBD3P0DP91 1061 aa12.52□□□□□ -0.41
PTPRE-205ENST00000463727 CHMLP26374 656 aa12.52□□□□□ -0.41
PTPRE-205ENST00000463727 CEBPAP49715 358 aaPredicted RBP12.52□□□□□ -0.41
PTPRE-205ENST00000463727 PKP1Q13835 747 aa12.52□□□□□ -0.41
PTPRE-205ENST00000463727 ZNF445P59923 1031 aa12.52□□□□□ -0.41
PTPRE-205ENST00000463727 ERC1Q8IUD2 1116 aa12.52□□□□□ -0.41
PTPRE-205ENST00000463727 MPNDQ8N594 471 aa12.52□□□□□ -0.41
PTPRE-205ENST00000463727 PREX1Q8TCU6 1659 aa12.51□□□□□ -0.41
PTPRE-205ENST00000463727 BTBD11A6QL63 1104 aa12.51□□□□□ -0.41
PTPRE-205ENST00000463727 FAM184AQ8NB25 1140 aa12.51□□□□□ -0.41
PTPRE-205ENST00000463727 RHPN1Q8TCX5 695 aa12.51□□□□□ -0.41
PTPRE-205ENST00000463727 DNAAF4Q8WXU2 420 aa12.51□□□□□ -0.41
PTPRE-205ENST00000463727 JAKMIP1Q96N16 626 aaKnown RBP12.51□□□□□ -0.41
PTPRE-205ENST00000463727 KIF13AQ9H1H9 1805 aa12.51□□□□□ -0.41
PTPRE-205ENST00000463727 ALKQ9UM73 1620 aa12.51□□□□□ -0.41
PTPRE-205ENST00000463727 PLEKHG3A1L390 1219 aa12.51□□□□□ -0.41
PTPRE-205ENST00000463727 CASTP20810 708 aaKnown RBP12.51□□□□□ -0.41
PTPRE-205ENST00000463727 XPCQ01831 940 aaPredicted RBP12.51□□□□□ -0.41
PTPRE-205ENST00000463727 RIC3Q7Z5B4 369 aa12.51□□□□□ -0.41
PTPRE-205ENST00000463727 ARHGEF40Q8TER5 1519 aa12.5□□□□□ -0.41
PTPRE-205ENST00000463727 PSMA5P28066 241 aa12.5□□□□□ -0.41
PTPRE-205ENST00000463727 LARP6Q9BRS8 491 aaKnown RBP12.5□□□□□ -0.41
PTPRE-205ENST00000463727 FSD1Q9BTV5 496 aa12.5□□□□□ -0.41
PTPRE-205ENST00000463727 PNMA6EA0A0J9YXQ4 647 aa12.5□□□□□ -0.41
PTPRE-205ENST00000463727 PI4KAP2A4QPH2 592 aa12.5□□□□□ -0.41
PTPRE-205ENST00000463727 RBM10P98175 930 aaKnown RBP12.5□□□□□ -0.41
PTPRE-205ENST00000463727 PI4KAP1Q8N8J0 262 aa12.5□□□□□ -0.41
PTPRE-205ENST00000463727 RBSNQ9H1K0 784 aa12.5□□□□□ -0.41
PTPRE-205ENST00000463727 LIMCH1Q9UPQ0 1083 aa12.5□□□□□ -0.41
PTPRE-205ENST00000463727 SHPRHQ149N8 1683 aa12.5□□□□□ -0.41
PTPRE-205ENST00000463727 H3BQV1 296 aa12.5□□□□□ -0.41
PTPRE-205ENST00000463727 IFFO2Q5TF58 517 aa12.5□□□□□ -0.41
PTPRE-205ENST00000463727 INTS4Q96HW7 963 aaKnown RBP12.5□□□□□ -0.41
PTPRE-205ENST00000463727 PDRG1Q9NUG6 133 aa12.5□□□□□ -0.41
PTPRE-205ENST00000463727 SPG7Q9UQ90 795 aa12.5□□□□□ -0.41
PTPRE-205ENST00000463727 USP32Q8NFA0 1604 aa12.5□□□□□ -0.41
PTPRE-205ENST00000463727 MYO5BQ9ULV0 1848 aa12.5□□□□□ -0.41
PTPRE-205ENST00000463727 ESCO1Q5FWF5 840 aa12.49□□□□□ -0.41
PTPRE-205ENST00000463727 HIP1O00291 1037 aa12.49□□□□□ -0.41
PTPRE-205ENST00000463727 AACSQ86V21 672 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms