RNA–Protein interactions for RNA: ENST00000463041.1

PTPRF-210, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 3

Gene PTPRF, Length 298 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-210ENST00000463041 UTRNP46939 3433 aa9.85□□□□□ -0.83
PTPRF-210ENST00000463041 SSFA2P28290 1259 aa9.84□□□□□ -0.83
PTPRF-210ENST00000463041 AKAP4Q5JQC9 854 aa9.84□□□□□ -0.83
PTPRF-210ENST00000463041 ITPK1Q13572 414 aa9.83□□□□□ -0.84
PTPRF-210ENST00000463041 RC3H1Q5TC82 1133 aaKnown RBP9.83□□□□□ -0.84
PTPRF-210ENST00000463041 NFATC2IPQ8NCF5 419 aa9.83□□□□□ -0.84
PTPRF-210ENST00000463041 LINC00116Q8NCU8 138 aa9.83□□□□□ -0.84
PTPRF-210ENST00000463041 RBM42Q9BTD8 480 aaKnown RBP9.83□□□□□ -0.84
PTPRF-210ENST00000463041 CHD4Q14839 1912 aa9.83□□□□□ -0.84
PTPRF-210ENST00000463041 C4BP0C0L5 1744 aa9.82□□□□□ -0.84
PTPRF-210ENST00000463041 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.82□□□□□ -0.84
PTPRF-210ENST00000463041 HMOX1P09601 288 aa9.82□□□□□ -0.84
PTPRF-210ENST00000463041 UBR3Q6ZT12 1888 aa9.82□□□□□ -0.84
PTPRF-210ENST00000463041 GOLGB1Q14789 3259 aaKnown RBP9.81□□□□□ -0.84
PTPRF-210ENST00000463041 CNGB1Q14028 1251 aaPredicted RBP9.81□□□□□ -0.84
PTPRF-210ENST00000463041 GPR162Q16538 588 aa9.81□□□□□ -0.84
PTPRF-210ENST00000463041 TRAPPC3LQ5T215 181 aa9.81□□□□□ -0.84
PTPRF-210ENST00000463041 MSL1Q68DK7 614 aa9.81□□□□□ -0.84
PTPRF-210ENST00000463041 KLHL34Q8N239 644 aa9.81□□□□□ -0.84
PTPRF-210ENST00000463041 SLC4A9Q96Q91 983 aa9.81□□□□□ -0.84
PTPRF-210ENST00000463041 RTCBQ9Y3I0 505 aaKnown RBP9.81□□□□□ -0.84
PTPRF-210ENST00000463041 CD2APQ9Y5K6 639 aa9.81□□□□□ -0.84
PTPRF-210ENST00000463041 SCN11AQ9UI33 1791 aa9.8□□□□□ -0.84
PTPRF-210ENST00000463041 GNPATO15228 680 aa9.8□□□□□ -0.84
PTPRF-210ENST00000463041 RNMTO43148 476 aaKnown RBP9.8□□□□□ -0.84
PTPRF-210ENST00000463041 PTCD1O75127 700 aaKnown RBP9.8□□□□□ -0.84
PTPRF-210ENST00000463041 RPS6KA4O75676 772 aa9.8□□□□□ -0.84
PTPRF-210ENST00000463041 PHF14O94880 888 aa9.8□□□□□ -0.84
PTPRF-210ENST00000463041 ADRA2BP18089 450 aa9.8□□□□□ -0.84
PTPRF-210ENST00000463041 MTHFSDQ2M296 383 aaKnown RBP9.8□□□□□ -0.84
PTPRF-210ENST00000463041 AMIGO3Q86WK7 504 aa9.8□□□□□ -0.84
PTPRF-210ENST00000463041 CFAP53Q96M91 514 aa9.8□□□□□ -0.84
PTPRF-210ENST00000463041 SLC52A2Q9HAB3 445 aa9.8□□□□□ -0.84
PTPRF-210ENST00000463041 LGR6Q9HBX8 967 aa9.8□□□□□ -0.84
PTPRF-210ENST00000463041 KDM6AO15550 1401 aaPredicted RBP9.8□□□□□ -0.84
PTPRF-210ENST00000463041 ZNF831Q5JPB2 1677 aa9.8□□□□□ -0.84
PTPRF-210ENST00000463041 U2SURPO15042 1029 aaKnown RBP9.79□□□□□ -0.84
PTPRF-210ENST00000463041 SMIM5Q71RC9 77 aa9.79□□□□□ -0.84
PTPRF-210ENST00000463041 NLGN1Q8N2Q7 840 aa9.79□□□□□ -0.84
PTPRF-210ENST00000463041 NUDCQ9Y266 331 aa9.79□□□□□ -0.84
PTPRF-210ENST00000463041 MYH14Q7Z406 1995 aaKnown RBP9.79□□□□□ -0.84
PTPRF-210ENST00000463041 CNTNAP4Q9C0A0 1308 aa9.79□□□□□ -0.84
PTPRF-210ENST00000463041 VIRMAQ69YN4 1812 aaKnown RBP9.78□□□□□ -0.84
PTPRF-210ENST00000463041 GRIN3BO60391 1043 aa9.78□□□□□ -0.84
PTPRF-210ENST00000463041 NLGN2Q8NFZ4 835 aa9.78□□□□□ -0.84
PTPRF-210ENST00000463041 GAS2L2Q8NHY3 880 aa9.78□□□□□ -0.84
PTPRF-210ENST00000463041 ARHGEF1Q92888 912 aaKnown RBP9.78□□□□□ -0.84
PTPRF-210ENST00000463041 RFC4P35249 363 aa9.77□□□□□ -0.85
PTPRF-210ENST00000463041 GNAT3A8MTJ3 354 aa9.76□□□□□ -0.85
PTPRF-210ENST00000463041 PPP2R1AP30153 589 aa9.76□□□□□ -0.85
PTPRF-210ENST00000463041 CRKLP46109 303 aaKnown RBP9.76□□□□□ -0.85
PTPRF-210ENST00000463041 PELP1Q8IZL8 1130 aaKnown RBP9.76□□□□□ -0.85
PTPRF-210ENST00000463041 VSIG10Q8N0Z9 540 aa9.76□□□□□ -0.85
PTPRF-210ENST00000463041 FCHSD2O94868 740 aa9.75□□□□□ -0.85
PTPRF-210ENST00000463041 MMP10P09238 476 aa9.75□□□□□ -0.85
PTPRF-210ENST00000463041 SLC39A6Q13433 755 aa9.75□□□□□ -0.85
PTPRF-210ENST00000463041 INTS5Q6P9B9 1019 aaKnown RBP9.75□□□□□ -0.85
PTPRF-210ENST00000463041 IL17REQ8NFR9 667 aa9.75□□□□□ -0.85
PTPRF-210ENST00000463041 COL5A3P25940 1745 aaPredicted RBP9.75□□□□□ -0.85
PTPRF-210ENST00000463041 COL3A1P02461 1466 aaPredicted RBP9.74□□□□□ -0.85
PTPRF-210ENST00000463041 U2AF1L5P0DN76 240 aaPredicted RBP9.74□□□□□ -0.85
PTPRF-210ENST00000463041 CYP19A1P11511 503 aaPredicted RBP9.74□□□□□ -0.85
PTPRF-210ENST00000463041 GYS1P13807 737 aa9.74□□□□□ -0.85
PTPRF-210ENST00000463041 U2AF1Q01081 240 aaKnown RBP eCLIP9.74□□□□□ -0.85
PTPRF-210ENST00000463041 TEFQ10587 303 aa9.74□□□□□ -0.85
PTPRF-210ENST00000463041 DNAJC10Q8IXB1 793 aa9.74□□□□□ -0.85
PTPRF-210ENST00000463041 RSPH6AQ9H0K4 717 aa9.74□□□□□ -0.85
PTPRF-210ENST00000463041 YBX3P16989 372 aaKnown RBP eCLIP9.73□□□□□ -0.851e-9■□□□□ 11
PTPRF-210ENST00000463041 PRKAR2BP31323 418 aa9.73□□□□□ -0.85
PTPRF-210ENST00000463041 TGFB2P61812 414 aa9.73□□□□□ -0.85
PTPRF-210ENST00000463041 TTC5Q8N0Z6 440 aa9.73□□□□□ -0.85
PTPRF-210ENST00000463041 ZNF784Q8NCA9 323 aaPredicted RBP9.73□□□□□ -0.85
PTPRF-210ENST00000463041 PHACTR3Q96KR7 559 aa9.73□□□□□ -0.85
PTPRF-210ENST00000463041 TEX13AQ9BXU3 409 aaPredicted RBP9.73□□□□□ -0.85
PTPRF-210ENST00000463041 CCDC87Q9NVE4 849 aa9.73□□□□□ -0.85
PTPRF-210ENST00000463041 PARP3Q9Y6F1 533 aa9.73□□□□□ -0.85
PTPRF-210ENST00000463041 ADAMTS7Q9UKP4 1686 aa9.72□□□□□ -0.85
PTPRF-210ENST00000463041 HTATSF1O43719 755 aaKnown RBP9.72□□□□□ -0.85
PTPRF-210ENST00000463041 ZPR1O75312 459 aa9.72□□□□□ -0.85
PTPRF-210ENST00000463041 STARD3NLO95772 234 aa9.72□□□□□ -0.85
PTPRF-210ENST00000463041 ZNF790Q6PG37 636 aa9.72□□□□□ -0.85
PTPRF-210ENST00000463041 MRC1P22897 1456 aa9.72□□□□□ -0.85
PTPRF-210ENST00000463041 TM4SF1P30408 202 aa9.71□□□□□ -0.86
PTPRF-210ENST00000463041 RTF1Q92541 710 aaKnown RBP9.71□□□□□ -0.86
PTPRF-210ENST00000463041 CICQ96RK0 1608 aaPredicted RBP9.71□□□□□ -0.86
PTPRF-210ENST00000463041 BTBD11A6QL63 1104 aa9.7□□□□□ -0.86
PTPRF-210ENST00000463041 NEFMP07197 916 aa9.7□□□□□ -0.86
PTPRF-210ENST00000463041 FKBP8Q14318 412 aa9.7□□□□□ -0.86
PTPRF-210ENST00000463041 FMNL2Q96PY5 1086 aa9.7□□□□□ -0.86
PTPRF-210ENST00000463041 PNNQ9H307 717 aaKnown RBP9.7□□□□□ -0.86
PTPRF-210ENST00000463041 SRP68Q9UHB9 627 aaKnown RBP9.7□□□□□ -0.86
PTPRF-210ENST00000463041 NARFQ9UHQ1 456 aa9.7□□□□□ -0.86
PTPRF-210ENST00000463041 SOS1Q07889 1333 aaPredicted RBP9.7□□□□□ -0.86
PTPRF-210ENST00000463041 USP42Q9H9J4 1324 aaKnown RBP9.7□□□□□ -0.86
PTPRF-210ENST00000463041 CEMIPQ8WUJ3 1361 aa9.7□□□□□ -0.86
PTPRF-210ENST00000463041 TJP1Q07157 1748 aa9.7□□□□□ -0.86
PTPRF-210ENST00000463041 KIF13BQ9NQT8 1826 aa9.7□□□□□ -0.86
PTPRF-210ENST00000463041 A0A087WZG4 1122 aa9.69□□□□□ -0.86
PTPRF-210ENST00000463041 A0A0G2JLW4 131 aa9.69□□□□□ -0.86
PTPRF-210ENST00000463041 EIF5P55010 431 aaKnown RBP9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 72.2 ms