RNA–Protein interactions for RNA: ENST00000463004.5

RBM39-223, Transcript of RNA binding motif protein 39, human

TSL 5

Gene RBM39, Length 4,580 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RBM39-223	ENST00000463004	CNNM1	Q9NRU3	951 aa		14.22	□□□□□ -0.13
RBM39-223	ENST00000463004	GLRX3	O76003	335 aa	Known RBP	14.22	□□□□□ -0.13
RBM39-223	ENST00000463004	CDK11B	P21127	795 aa	Known RBP	14.22	□□□□□ -0.13
RBM39-223	ENST00000463004	MRPL50	Q8N5N7	158 aa	Known RBP	14.21	□□□□□ -0.13
RBM39-223	ENST00000463004	ROBO2	Q9HCK4	1378 aa		14.21	□□□□□ -0.13
RBM39-223	ENST00000463004	TOMM22	Q9NS69	142 aa		14.21	□□□□□ -0.13
RBM39-223	ENST00000463004	MIS18A	Q9NYP9	233 aa		14.21	□□□□□ -0.13
RBM39-223	ENST00000463004	USP6	P35125	1406 aa		14.21	□□□□□ -0.13
RBM39-223	ENST00000463004	PCDH11X	Q9BZA7	1347 aa		14.21	□□□□□ -0.13
RBM39-223	ENST00000463004	PCDH11Y	Q9BZA8	1340 aa		14.21	□□□□□ -0.13
RBM39-223	ENST00000463004	AKAP17A	Q02040	695 aa	Known RBP	14.21	□□□□□ -0.14
RBM39-223	ENST00000463004	AEBP1	Q8IUX7	1158 aa		14.2	□□□□□ -0.14
RBM39-223	ENST00000463004	LMTK3	Q96Q04	1460 aa		14.2	□□□□□ -0.14
RBM39-223	ENST00000463004	VAMP4	O75379	141 aa		14.2	□□□□□ -0.14
RBM39-223	ENST00000463004	RALYL	Q86SE5	291 aa	Known RBP	14.2	□□□□□ -0.14
RBM39-223	ENST00000463004	KIAA0232	Q92628	1395 aa		14.2	□□□□□ -0.14
RBM39-223	ENST00000463004	VWDE	Q8N2E2	1590 aa		14.19	□□□□□ -0.14
RBM39-223	ENST00000463004	SF3B2	Q13435	895 aa	Known RBP	14.19	□□□□□ -0.14
RBM39-223	ENST00000463004	MPHOSPH8	Q99549	860 aa		14.19	□□□□□ -0.14
RBM39-223	ENST00000463004	SLAIN2	Q9P270	581 aa		14.19	□□□□□ -0.14
RBM39-223	ENST00000463004		H3BQV1	296 aa		14.19	□□□□□ -0.14
RBM39-223	ENST00000463004	CHRNA2	Q15822	529 aa		14.19	□□□□□ -0.14
RBM39-223	ENST00000463004	IFFO2	Q5TF58	517 aa		14.19	□□□□□ -0.14
RBM39-223	ENST00000463004	MED14	O60244	1454 aa		14.19	□□□□□ -0.14
RBM39-223	ENST00000463004	ERICH2	A1L162	156 aa		14.19	□□□□□ -0.14
RBM39-223	ENST00000463004	FAM83G	A6ND36	823 aa		14.19	□□□□□ -0.14
RBM39-223	ENST00000463004	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	14.19	□□□□□ -0.14
RBM39-223	ENST00000463004	UBAP1L	F5GYI3	381 aa		14.18	□□□□□ -0.14
RBM39-223	ENST00000463004	TTC39A	Q5SRH9	613 aa		14.18	□□□□□ -0.14
RBM39-223	ENST00000463004	ANKRD1	Q15327	319 aa		14.18	□□□□□ -0.14
RBM39-223	ENST00000463004	ADAMTS2	O95450	1211 aa		14.18	□□□□□ -0.14
RBM39-223	ENST00000463004	APP	P05067	770 aa		14.18	□□□□□ -0.14
RBM39-223	ENST00000463004	CHL1	O00533	1208 aa		14.17	□□□□□ -0.14
RBM39-223	ENST00000463004	ORAI2	Q96SN7	254 aa		14.17	□□□□□ -0.14
RBM39-223	ENST00000463004	DEPDC5	O75140	1603 aa		14.17	□□□□□ -0.14
RBM39-223	ENST00000463004	WASHC4	Q2M389	1173 aa		14.17	□□□□□ -0.14
RBM39-223	ENST00000463004	CDK12	Q9NYV4	1490 aa	Predicted RBP	14.17	□□□□□ -0.14
RBM39-223	ENST00000463004	RNMT	O43148	476 aa	Known RBP	14.17	□□□□□ -0.14
RBM39-223	ENST00000463004	IGHMBP2	P38935	993 aa	Known RBP	14.17	□□□□□ -0.14
RBM39-223	ENST00000463004	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	14.17	□□□□□ -0.14	2e-26	■■■□□ 15.2
RBM39-223	ENST00000463004	TMEM94	Q12767	1356 aa		14.17	□□□□□ -0.14
RBM39-223	ENST00000463004	PTCD1	O75127	700 aa	Known RBP	14.17	□□□□□ -0.14
RBM39-223	ENST00000463004	TPM4	P67936	248 aa		14.17	□□□□□ -0.14
RBM39-223	ENST00000463004	KRT32	Q14532	448 aa		14.17	□□□□□ -0.14
RBM39-223	ENST00000463004	C20orf194	Q5TEA3	1177 aa		14.17	□□□□□ -0.14
RBM39-223	ENST00000463004	KSR2	Q6VAB6	950 aa		14.17	□□□□□ -0.14
RBM39-223	ENST00000463004	PHACTR3	Q96KR7	559 aa		14.17	□□□□□ -0.14
RBM39-223	ENST00000463004	CPLX1	O14810	134 aa		14.16	□□□□□ -0.14
RBM39-223	ENST00000463004	FBLN1	P23142	703 aa		14.16	□□□□□ -0.14
RBM39-223	ENST00000463004	TRIM29	Q14134	588 aa		14.16	□□□□□ -0.14
RBM39-223	ENST00000463004	AACS	Q86V21	672 aa		14.16	□□□□□ -0.14
RBM39-223	ENST00000463004	CTNNA3	Q9UI47	895 aa		14.16	□□□□□ -0.14
RBM39-223	ENST00000463004	ISY1	Q9ULR0	285 aa	Known RBP	14.16	□□□□□ -0.14
RBM39-223	ENST00000463004	PDC	P20941	246 aa		14.16	□□□□□ -0.14
RBM39-223	ENST00000463004	MYD88	Q99836	296 aa		14.16	□□□□□ -0.14
RBM39-223	ENST00000463004	SLC3A2	P08195	630 aa	Known RBP	14.16	□□□□□ -0.14
RBM39-223	ENST00000463004	MX1	P20591	662 aa		14.16	□□□□□ -0.14
RBM39-223	ENST00000463004	CWC22	Q9HCG8	908 aa	Known RBP	14.16	□□□□□ -0.14
RBM39-223	ENST00000463004	CWC25	Q9NXE8	425 aa	Predicted RBP	14.16	□□□□□ -0.14
RBM39-223	ENST00000463004	SMC3	Q9UQE7	1217 aa		14.16	□□□□□ -0.14
RBM39-223	ENST00000463004	SART3	Q15020	963 aa	Known RBP	14.15	□□□□□ -0.14
RBM39-223	ENST00000463004	CLTC	Q00610	1675 aa	Known RBP	14.15	□□□□□ -0.14
RBM39-223	ENST00000463004	PTCH1	Q13635	1447 aa		14.15	□□□□□ -0.14
RBM39-223	ENST00000463004	RERE	Q9P2R6	1566 aa		14.15	□□□□□ -0.14
RBM39-223	ENST00000463004	RNF123	Q5XPI4	1314 aa		14.15	□□□□□ -0.14
RBM39-223	ENST00000463004	ANKRD13D	Q6ZTN6	518 aa		14.15	□□□□□ -0.14
RBM39-223	ENST00000463004	ANKRD44	Q8N8A2	993 aa		14.15	□□□□□ -0.14
RBM39-223	ENST00000463004	NRXN1	Q9ULB1	1477 aa		14.15	□□□□□ -0.14
RBM39-223	ENST00000463004	BMP2KL	Q5H9B9	411 aa		14.15	□□□□□ -0.14
RBM39-223	ENST00000463004	C8orf58	Q8NAV2	365 aa		14.15	□□□□□ -0.14
RBM39-223	ENST00000463004	LINS1	Q8NG48	757 aa		14.15	□□□□□ -0.14
RBM39-223	ENST00000463004	DHX16	O60231	1041 aa	Known RBP	14.14	□□□□□ -0.15
RBM39-223	ENST00000463004	NACAP1	Q9BZK3	213 aa		14.14	□□□□□ -0.15
RBM39-223	ENST00000463004	MAP3K2	Q9Y2U5	619 aa		14.14	□□□□□ -0.15
RBM39-223	ENST00000463004	NEXMIF	Q5QGS0	1516 aa		14.14	□□□□□ -0.15
RBM39-223	ENST00000463004	SF3A1	Q15459	793 aa	Known RBP	14.14	□□□□□ -0.15
RBM39-223	ENST00000463004	DDB1	Q16531	1140 aa		14.14	□□□□□ -0.15
RBM39-223	ENST00000463004	TRIM34	Q9BYJ4	488 aa		14.14	□□□□□ -0.15
RBM39-223	ENST00000463004	PI4KAP2	A4QPH2	592 aa		14.13	□□□□□ -0.15
RBM39-223	ENST00000463004	ZPR1	O75312	459 aa		14.13	□□□□□ -0.15
RBM39-223	ENST00000463004	PI4KAP1	Q8N8J0	262 aa		14.13	□□□□□ -0.15
RBM39-223	ENST00000463004	TRIM35	Q9UPQ4	493 aa		14.13	□□□□□ -0.15
RBM39-223	ENST00000463004	ADGRL3	Q9HAR2	1447 aa		14.13	□□□□□ -0.15
RBM39-223	ENST00000463004	CIZ1	Q9ULV3	898 aa	Predicted RBP	14.13	□□□□□ -0.15
RBM39-223	ENST00000463004	LRRFIP2	Q9Y608	721 aa	Known RBP	14.13	□□□□□ -0.15
RBM39-223	ENST00000463004	TULP4	Q9NRJ4	1543 aa		14.13	□□□□□ -0.15
RBM39-223	ENST00000463004	IFIT5	Q13325	482 aa	Known RBP	14.13	□□□□□ -0.15
RBM39-223	ENST00000463004	PPP1R42	Q7Z4L9	355 aa		14.12	□□□□□ -0.15
RBM39-223	ENST00000463004	DDX21	Q9NR30	783 aa	Known RBP eCLIP	14.12	□□□□□ -0.15
RBM39-223	ENST00000463004	SPATA31D1	Q6ZQQ2	1576 aa		14.12	□□□□□ -0.15
RBM39-223	ENST00000463004	NOL8	Q76FK4	1167 aa	Known RBP	14.12	□□□□□ -0.15
RBM39-223	ENST00000463004	ZSCAN31	Q96LW9	406 aa	Predicted RBP	14.12	□□□□□ -0.15
RBM39-223	ENST00000463004	DNAJC2	Q99543	621 aa	Known RBP	14.12	□□□□□ -0.15
RBM39-223	ENST00000463004	PHF23	Q9BUL5	403 aa	Predicted RBP	14.12	□□□□□ -0.15
RBM39-223	ENST00000463004	GOLGA6L3	A6NEY3	463 aa		14.12	□□□□□ -0.15
RBM39-223	ENST00000463004	IFIT1	P09914	478 aa	Known RBP	14.12	□□□□□ -0.15
RBM39-223	ENST00000463004		F6X3S4	739 aa		14.11	□□□□□ -0.15
RBM39-223	ENST00000463004	ANKRD18B	A2A2Z9	1011 aa		14.11	□□□□□ -0.15
RBM39-223	ENST00000463004	ATP8B2	P98198	1209 aa		14.1	□□□□□ -0.15
RBM39-223	ENST00000463004	EXOC6B	Q9Y2D4	811 aa		14.1	□□□□□ -0.15

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