RNA–Protein interactions for RNA: ENST00000462892.1

SEMA4A-209, Transcript of semaphorin 4A, human

TSL 3

Gene SEMA4A, Length 993 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SEMA4A-209	ENST00000462892	LGR6	Q9HBX8	967 aa		33.79	■■■■□ 3
SEMA4A-209	ENST00000462892	ZEB1	P37275	1124 aa	Predicted RBP	33.78	■■■■□ 3
SEMA4A-209	ENST00000462892	ITPK1	Q13572	414 aa		33.78	■■■■□ 3
SEMA4A-209	ENST00000462892	COL23A1	Q86Y22	540 aa	Predicted RBP	33.78	■■■■□ 3
SEMA4A-209	ENST00000462892	LINC00116	Q8NCU8	138 aa		33.78	■■■■□ 3
SEMA4A-209	ENST00000462892	C4B	P0C0L5	1744 aa		33.78	■■■■□ 3
SEMA4A-209	ENST00000462892	SCN11A	Q9UI33	1791 aa		33.77	■■■■□ 3
SEMA4A-209	ENST00000462892	RNMT	O43148	476 aa	Known RBP	33.76	■■■□□ 2.99
SEMA4A-209	ENST00000462892	MSH5	O43196	834 aa		33.76	■■■□□ 2.99
SEMA4A-209	ENST00000462892	AK7	Q96M32	723 aa		33.76	■■■□□ 2.99
SEMA4A-209	ENST00000462892	RBM42	Q9BTD8	480 aa	Known RBP	33.76	■■■□□ 2.99
SEMA4A-209	ENST00000462892	U2AF1L5	P0DN76	240 aa	Predicted RBP	33.75	■■■□□ 2.99
SEMA4A-209	ENST00000462892	U2AF1	Q01081	240 aa	Known RBP eCLIP	33.75	■■■□□ 2.99
SEMA4A-209	ENST00000462892	SLC4A9	Q96Q91	983 aa		33.75	■■■□□ 2.99
SEMA4A-209	ENST00000462892	RSPH6A	Q9H0K4	717 aa		33.75	■■■□□ 2.99
SEMA4A-209	ENST00000462892	PRKAR2B	P31323	418 aa		33.74	■■■□□ 2.99
SEMA4A-209	ENST00000462892	SLC52A2	Q9HAB3	445 aa		33.74	■■■□□ 2.99
SEMA4A-209	ENST00000462892	FLAD1	Q8NFF5	587 aa		33.72	■■■□□ 2.99
SEMA4A-209	ENST00000462892	GAS2L2	Q8NHY3	880 aa		33.72	■■■□□ 2.99
SEMA4A-209	ENST00000462892	PHACTR3	Q96KR7	559 aa		33.72	■■■□□ 2.99
SEMA4A-209	ENST00000462892	AMIGO3	Q86WK7	504 aa		33.71	■■■□□ 2.99
SEMA4A-209	ENST00000462892	MRC1	P22897	1456 aa		33.69	■■■□□ 2.98
SEMA4A-209	ENST00000462892	ADAMTS7	Q9UKP4	1686 aa		33.69	■■■□□ 2.98
SEMA4A-209	ENST00000462892	PTCD1	O75127	700 aa	Known RBP	33.69	■■■□□ 2.98
SEMA4A-209	ENST00000462892	SMIM5	Q71RC9	77 aa		33.69	■■■□□ 2.98
SEMA4A-209	ENST00000462892	ARX	Q96QS3	562 aa		33.69	■■■□□ 2.98
SEMA4A-209	ENST00000462892	ZNF831	Q5JPB2	1677 aa		33.68	■■■□□ 2.98
SEMA4A-209	ENST00000462892	MAP3K5	Q99683	1374 aa		33.68	■■■□□ 2.98
SEMA4A-209	ENST00000462892	GNAT3	A8MTJ3	354 aa		33.67	■■■□□ 2.98
SEMA4A-209	ENST00000462892	FCHSD2	O94868	740 aa		33.67	■■■□□ 2.98
SEMA4A-209	ENST00000462892	PHF14	O94880	888 aa		33.67	■■■□□ 2.98
SEMA4A-209	ENST00000462892	RALBP1	Q15311	655 aa		33.67	■■■□□ 2.98
SEMA4A-209	ENST00000462892	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	33.66	■■■□□ 2.98
SEMA4A-209	ENST00000462892	POLD1	P28340	1107 aa		33.66	■■■□□ 2.98
SEMA4A-209	ENST00000462892	COL24A1	Q17RW2	1714 aa		33.65	■■■□□ 2.98
SEMA4A-209	ENST00000462892	GNPAT	O15228	680 aa		33.65	■■■□□ 2.98
SEMA4A-209	ENST00000462892	FHDC1	Q9C0D6	1143 aa	Predicted RBP	33.65	■■■□□ 2.98
SEMA4A-209	ENST00000462892	SSFA2	P28290	1259 aa		33.64	■■■□□ 2.98
SEMA4A-209	ENST00000462892	IL17RE	Q8NFR9	667 aa		33.64	■■■□□ 2.98
SEMA4A-209	ENST00000462892	UBR3	Q6ZT12	1888 aa		33.64	■■■□□ 2.98
SEMA4A-209	ENST00000462892	SLC39A6	Q13433	755 aa		33.62	■■■□□ 2.97
SEMA4A-209	ENST00000462892	MSL1	Q68DK7	614 aa		33.62	■■■□□ 2.97
SEMA4A-209	ENST00000462892	VIRMA	Q69YN4	1812 aa	Known RBP	33.62	■■■□□ 2.97
SEMA4A-209	ENST00000462892	RC3H1	Q5TC82	1133 aa	Known RBP	33.6	■■■□□ 2.97
SEMA4A-209	ENST00000462892	SYT17	Q9BSW7	474 aa		33.6	■■■□□ 2.97
SEMA4A-209	ENST00000462892	CNTNAP4	Q9C0A0	1308 aa		33.59	■■■□□ 2.97
SEMA4A-209	ENST00000462892	COL5A3	P25940	1745 aa	Predicted RBP	33.59	■■■□□ 2.97
SEMA4A-209	ENST00000462892	TEF	Q10587	303 aa		33.58	■■■□□ 2.97
SEMA4A-209	ENST00000462892	RTCB	Q9Y3I0	505 aa	Known RBP	33.57	■■■□□ 2.96
SEMA4A-209	ENST00000462892	TJP1	Q07157	1748 aa		33.55	■■■□□ 2.96
SEMA4A-209	ENST00000462892	MYBBP1A	Q9BQG0	1328 aa	Known RBP	33.54	■■■□□ 2.96
SEMA4A-209	ENST00000462892	KCP	Q6ZWJ8	1503 aa		33.54	■■■□□ 2.96
SEMA4A-209	ENST00000462892	CEMIP	Q8WUJ3	1361 aa		33.54	■■■□□ 2.96
SEMA4A-209	ENST00000462892	RPS6KA4	O75676	772 aa		33.53	■■■□□ 2.96
SEMA4A-209	ENST00000462892	CIC	Q96RK0	1608 aa	Predicted RBP	33.53	■■■□□ 2.96
SEMA4A-209	ENST00000462892	CRKL	P46109	303 aa	Known RBP	33.52	■■■□□ 2.96
SEMA4A-209	ENST00000462892	TRAPPC3L	Q5T215	181 aa		33.52	■■■□□ 2.96
SEMA4A-209	ENST00000462892	DNAJC10	Q8IXB1	793 aa		33.52	■■■□□ 2.96
SEMA4A-209	ENST00000462892	KLHL34	Q8N239	644 aa		33.52	■■■□□ 2.96
SEMA4A-209	ENST00000462892	TTC5	Q8N0Z6	440 aa		33.5	■■■□□ 2.95
SEMA4A-209	ENST00000462892	RTF1	Q92541	710 aa	Known RBP	33.5	■■■□□ 2.95
SEMA4A-209	ENST00000462892	ADRA2B	P18089	450 aa		33.49	■■■□□ 2.95
SEMA4A-209	ENST00000462892	ARHGEF1	Q92888	912 aa	Known RBP	33.49	■■■□□ 2.95
SEMA4A-209	ENST00000462892	PLEKHF1	Q96S99	279 aa		33.49	■■■□□ 2.95
SEMA4A-209	ENST00000462892	SIPA1L3	O60292	1781 aa	Predicted RBP	33.48	■■■□□ 2.95
SEMA4A-209	ENST00000462892	DCAF8L1	A6NGE4	600 aa		33.48	■■■□□ 2.95
SEMA4A-209	ENST00000462892	NEFM	P07197	916 aa		33.48	■■■□□ 2.95
SEMA4A-209	ENST00000462892	MCM10	Q7L590	875 aa		33.48	■■■□□ 2.95
SEMA4A-209	ENST00000462892	INTS5	Q6P9B9	1019 aa	Known RBP	33.47	■■■□□ 2.95
SEMA4A-209	ENST00000462892	ZNF790	Q6PG37	636 aa		33.47	■■■□□ 2.95
SEMA4A-209	ENST00000462892	VSIG10	Q8N0Z9	540 aa		33.47	■■■□□ 2.95
SEMA4A-209	ENST00000462892	MYH14	Q7Z406	1995 aa	Known RBP	33.47	■■■□□ 2.95
SEMA4A-209	ENST00000462892	HTATSF1	O43719	755 aa	Known RBP	33.46	■■■□□ 2.95
SEMA4A-209	ENST00000462892	UBR2	Q8IWV8	1755 aa		33.46	■■■□□ 2.95
SEMA4A-209	ENST00000462892	CYP19A1	P11511	503 aa	Predicted RBP	33.45	■■■□□ 2.95
SEMA4A-209	ENST00000462892	DCTN1	Q14203	1278 aa		33.45	■■■□□ 2.95
SEMA4A-209	ENST00000462892	ZNF496	Q96IT1	587 aa	Predicted RBP	33.44	■■■□□ 2.94
SEMA4A-209	ENST00000462892	PNN	Q9H307	717 aa	Known RBP	33.44	■■■□□ 2.94
SEMA4A-209	ENST00000462892	PRKRIP1	Q9H875	184 aa	Predicted RBP	33.44	■■■□□ 2.94
SEMA4A-209	ENST00000462892	CCDC87	Q9NVE4	849 aa		33.44	■■■□□ 2.94
SEMA4A-209	ENST00000462892	BTBD11	A6QL63	1104 aa		33.43	■■■□□ 2.94
SEMA4A-209	ENST00000462892	RFC4	P35249	363 aa		33.43	■■■□□ 2.94
SEMA4A-209	ENST00000462892	MAPK8IP3	Q9UPT6	1336 aa		33.4	■■■□□ 2.94
SEMA4A-209	ENST00000462892	KCNQ3	O43525	872 aa		33.4	■■■□□ 2.94
SEMA4A-209	ENST00000462892	NLGN2	Q8NFZ4	835 aa		33.4	■■■□□ 2.94
SEMA4A-209	ENST00000462892	HEG1	Q9ULI3	1381 aa		33.39	■■■□□ 2.94
SEMA4A-209	ENST00000462892	NFE2L2	Q16236	605 aa		33.39	■■■□□ 2.94
SEMA4A-209	ENST00000462892	GYS1	P13807	737 aa		33.38	■■■□□ 2.93
SEMA4A-209	ENST00000462892	NLGN1	Q8N2Q7	840 aa		33.38	■■■□□ 2.93
SEMA4A-209	ENST00000462892	FMNL2	Q96PY5	1086 aa		33.38	■■■□□ 2.93
SEMA4A-209	ENST00000462892	ZNF316	A6NFI3	1004 aa	Predicted RBP	33.37	■■■□□ 2.93
SEMA4A-209	ENST00000462892	C4A	P0C0L4	1744 aa		33.36	■■■□□ 2.93
SEMA4A-209	ENST00000462892	SOS1	Q07889	1333 aa	Predicted RBP	33.36	■■■□□ 2.93
SEMA4A-209	ENST00000462892	MMP10	P09238	476 aa		33.36	■■■□□ 2.93
SEMA4A-209	ENST00000462892	ZBTB1	Q9Y2K1	713 aa		33.36	■■■□□ 2.93
SEMA4A-209	ENST00000462892	CD2AP	Q9Y5K6	639 aa		33.36	■■■□□ 2.93
SEMA4A-209	ENST00000462892	STARD3NL	O95772	234 aa		33.35	■■■□□ 2.93
SEMA4A-209	ENST00000462892	SRP68	Q9UHB9	627 aa	Known RBP	33.35	■■■□□ 2.93
SEMA4A-209	ENST00000462892	TEX13A	Q9BXU3	409 aa	Predicted RBP	33.34	■■■□□ 2.93
SEMA4A-209	ENST00000462892	USP42	Q9H9J4	1324 aa	Known RBP	33.33	■■■□□ 2.93

Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms