RNA–Protein interactions for RNA: ENST00000462787.5

SMC4-204, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2 BASIC

Gene SMC4, Length 5,033 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-204ENST00000462787 SCAF11Q99590 1463 aaKnown RBP18.52■□□□□ 0.55
SMC4-204ENST00000462787 PRPF40BQ6NWY9 871 aaKnown RBP18.52■□□□□ 0.55
SMC4-204ENST00000462787 CCDC150Q8NCX0 1101 aa18.52■□□□□ 0.55
SMC4-204ENST00000462787 PRAM1Q96QH2 718 aa18.52■□□□□ 0.55
SMC4-204ENST00000462787 ZNF397Q8NF99 534 aaPredicted RBP18.51■□□□□ 0.55
SMC4-204ENST00000462787 CCDC148Q8NFR7 591 aa18.51■□□□□ 0.55
SMC4-204ENST00000462787 CCDC181Q5TID7 509 aa18.51■□□□□ 0.55
SMC4-204ENST00000462787 KIF5CO60282 957 aa18.51■□□□□ 0.55
SMC4-204ENST00000462787 GIMAP6Q6P9H5 292 aa18.51■□□□□ 0.55
SMC4-204ENST00000462787 USP48Q86UV5 1035 aa18.51■□□□□ 0.55
SMC4-204ENST00000462787 TOP1P11387 765 aaKnown RBP18.51■□□□□ 0.55
SMC4-204ENST00000462787 AACSQ86V21 672 aa18.51■□□□□ 0.55
SMC4-204ENST00000462787 GOLGA6L7A0A1B0GV03 622 aa18.5■□□□□ 0.55
SMC4-204ENST00000462787 NSD2O96028 1365 aa18.5■□□□□ 0.55
SMC4-204ENST00000462787 AIMP1Q12904 312 aaKnown RBP18.5■□□□□ 0.55
SMC4-204ENST00000462787 NUTM1Q86Y26 1132 aa18.5■□□□□ 0.55
SMC4-204ENST00000462787 TXLNAP40222 546 aa18.5■□□□□ 0.55
SMC4-204ENST00000462787 CABP1Q9NZU7 370 aa18.5■□□□□ 0.55
SMC4-204ENST00000462787 HMGXB3Q12766 1538 aa18.5■□□□□ 0.55
SMC4-204ENST00000462787 CCDC186Q7Z3E2 898 aa18.5■□□□□ 0.55
SMC4-204ENST00000462787 MYRIPQ8NFW9 859 aa18.5■□□□□ 0.55
SMC4-204ENST00000462787 GJB2P29033 226 aa18.5■□□□□ 0.55
SMC4-204ENST00000462787 CDKL5O76039 1030 aa18.49■□□□□ 0.55
SMC4-204ENST00000462787 TOPBP1Q92547 1522 aa18.49■□□□□ 0.55
SMC4-204ENST00000462787 LUC7LQ9NQ29 371 aaKnown RBP18.49■□□□□ 0.55
SMC4-204ENST00000462787 AFAP1Q8N556 730 aa18.49■□□□□ 0.55
SMC4-204ENST00000462787 RBSNQ9H1K0 784 aa18.49■□□□□ 0.55
SMC4-204ENST00000462787 FAM193AP78312 1265 aa18.49■□□□□ 0.55
SMC4-204ENST00000462787 CDK19Q9BWU1 502 aa18.49■□□□□ 0.55
SMC4-204ENST00000462787 ASXL1Q8IXJ9 1541 aa18.49■□□□□ 0.55
SMC4-204ENST00000462787 ATP2B1P20020 1258 aa18.48■□□□□ 0.55
SMC4-204ENST00000462787 PTPRCP08575 1304 aa18.48■□□□□ 0.55
SMC4-204ENST00000462787 SLU7O95391 586 aaKnown RBP18.48■□□□□ 0.55
SMC4-204ENST00000462787 DDX11Q96FC9 970 aa18.48■□□□□ 0.55
SMC4-204ENST00000462787 RBM42Q9BTD8 480 aaKnown RBP18.48■□□□□ 0.55
SMC4-204ENST00000462787 LMAN1P49257 510 aa18.48■□□□□ 0.55
SMC4-204ENST00000462787 ABCA10Q8WWZ4 1543 aa18.47■□□□□ 0.55
SMC4-204ENST00000462787 IVLP07476 585 aa18.47■□□□□ 0.55
SMC4-204ENST00000462787 SDSP20132 328 aa18.47■□□□□ 0.55
SMC4-204ENST00000462787 KIF4BQ2VIQ3 1234 aa18.47■□□□□ 0.55
SMC4-204ENST00000462787 ZNF692Q9BU19 519 aaPredicted RBP18.47■□□□□ 0.55
SMC4-204ENST00000462787 ERLIN2O94905 339 aa18.47■□□□□ 0.55
SMC4-204ENST00000462787 THUMPD2Q9BTF0 503 aaKnown RBP18.47■□□□□ 0.55
SMC4-204ENST00000462787 CUL7Q14999 1698 aa18.46■□□□□ 0.55
SMC4-204ENST00000462787 AMOTL1Q8IY63 956 aa18.46■□□□□ 0.55
SMC4-204ENST00000462787 STIM1Q13586 685 aa18.46■□□□□ 0.55
SMC4-204ENST00000462787 TMC6Q7Z403 805 aa18.46■□□□□ 0.55
SMC4-204ENST00000462787 TRIM22Q8IYM9 498 aa18.46■□□□□ 0.55
SMC4-204ENST00000462787 KDM4AO75164 1064 aa18.46■□□□□ 0.55
SMC4-204ENST00000462787 SKILP12757 684 aa18.46■□□□□ 0.55
SMC4-204ENST00000462787 CTNNA3Q9UI47 895 aa18.46■□□□□ 0.55
SMC4-204ENST00000462787 GABPB1Q06547 395 aaPredicted RBP18.46■□□□□ 0.55
SMC4-204ENST00000462787 SRRTQ9BXP5 876 aaKnown RBP18.46■□□□□ 0.55
SMC4-204ENST00000462787 BIVM-ERCC5R4GMW8 1640 aa18.45■□□□□ 0.54
SMC4-204ENST00000462787 INTS4Q96HW7 963 aaKnown RBP18.45■□□□□ 0.54
SMC4-204ENST00000462787 PPP1R9BQ96SB3 815 aa18.45■□□□□ 0.54
SMC4-204ENST00000462787 PIBF1Q8WXW3 757 aa18.45■□□□□ 0.54
SMC4-204ENST00000462787 PIK3C2GO75747 1445 aa18.45■□□□□ 0.54
SMC4-204ENST00000462787 CNPY2Q9Y2B0 182 aa18.45■□□□□ 0.54
SMC4-204ENST00000462787 TBC1D2BQ9UPU7 963 aa18.44■□□□□ 0.54
SMC4-204ENST00000462787 EPS15P42566 896 aa18.44■□□□□ 0.54
SMC4-204ENST00000462787 VPS53Q5VIR6 699 aa18.44■□□□□ 0.54
SMC4-204ENST00000462787 RLBP1P12271 317 aa18.44■□□□□ 0.54
SMC4-204ENST00000462787 GTF2A1P52655 376 aaPredicted RBP18.44■□□□□ 0.54
SMC4-204ENST00000462787 MICALCLQ6ZW33 695 aa18.44■□□□□ 0.54
SMC4-204ENST00000462787 ZNF500O60304 480 aaPredicted RBP18.43■□□□□ 0.54
SMC4-204ENST00000462787 CTR9Q6PD62 1173 aa18.43■□□□□ 0.54
SMC4-204ENST00000462787 ZMYM3Q14202 1370 aa18.43■□□□□ 0.54
SMC4-204ENST00000462787 FSIP1Q8NA03 581 aa18.43■□□□□ 0.54
SMC4-204ENST00000462787 ZMYM4Q5VZL5 1548 aa18.43■□□□□ 0.54
SMC4-204ENST00000462787 DNMBPQ6XZF7 1577 aa18.43■□□□□ 0.54
SMC4-204ENST00000462787 ANO6Q4KMQ2 910 aa18.43■□□□□ 0.54
SMC4-204ENST00000462787 CENPHQ9H3R5 247 aa18.43■□□□□ 0.54
SMC4-204ENST00000462787 ARFGAP3Q9NP61 516 aa18.43■□□□□ 0.54
SMC4-204ENST00000462787 POLR3AO14802 1390 aaPredicted RBP18.43■□□□□ 0.54
SMC4-204ENST00000462787 SMARCC1Q92922 1105 aaPredicted RBP18.43■□□□□ 0.54
SMC4-204ENST00000462787 HMGB1P09429 215 aaKnown RBP18.42■□□□□ 0.54
SMC4-204ENST00000462787 TFIP11Q9UBB9 837 aaKnown RBP18.42■□□□□ 0.54
SMC4-204ENST00000462787 FSD2A1L4K1 749 aa18.42■□□□□ 0.54
SMC4-204ENST00000462787 LRRFIP2Q9Y608 721 aaKnown RBP18.42■□□□□ 0.54
SMC4-204ENST00000462787 THOC2Q8NI27 1593 aaKnown RBP18.42■□□□□ 0.54
SMC4-204ENST00000462787 NUP160Q12769 1436 aa18.42■□□□□ 0.54
SMC4-204ENST00000462787 F13A1P00488 732 aa18.41■□□□□ 0.54
SMC4-204ENST00000462787 KIAA1328Q86T90 577 aa18.41■□□□□ 0.54
SMC4-204ENST00000462787 SLC3A2P08195 630 aaKnown RBP18.41■□□□□ 0.54
SMC4-204ENST00000462787 CCDC158Q5M9N0 1113 aa18.41■□□□□ 0.54
SMC4-204ENST00000462787 ESYT1Q9BSJ8 1104 aa18.41■□□□□ 0.54
SMC4-204ENST00000462787 ZSCAN16Q9H4T2 348 aaPredicted RBP18.41■□□□□ 0.54
SMC4-204ENST00000462787 ZBTB40Q9NUA8 1239 aa18.4■□□□□ 0.54
SMC4-204ENST00000462787 UGGT2Q9NYU1 1516 aa18.4■□□□□ 0.54
SMC4-204ENST00000462787 DDX24Q9GZR7 859 aaKnown RBP eCLIP18.4■□□□□ 0.545e-8■■■□□ 16.4
SMC4-204ENST00000462787 PLEKHO1Q53GL0 409 aaPredicted RBP18.4■□□□□ 0.54
SMC4-204ENST00000462787 ODF2Q5BJF6 829 aa18.4■□□□□ 0.54
SMC4-204ENST00000462787 WASF1Q92558 559 aa18.4■□□□□ 0.54
SMC4-204ENST00000462787 SIL1Q9H173 461 aa18.4■□□□□ 0.54
SMC4-204ENST00000462787 NLRP6P59044 892 aa18.4■□□□□ 0.54
SMC4-204ENST00000462787 CCAR1Q8IX12 1150 aaKnown RBP18.4■□□□□ 0.54
SMC4-204ENST00000462787 ANKRD44Q8N8A2 993 aa18.4■□□□□ 0.54
SMC4-204ENST00000462787 PER1O15534 1290 aaPredicted RBP18.39■□□□□ 0.53
SMC4-204ENST00000462787 IRX3P78415 501 aaPredicted RBP18.39■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms