RNA–Protein interactions for RNA: ENST00000462429.1

VPS41-210, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 3

Gene VPS41, Length 347 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-210ENST00000462429 IL2RAP01589 272 aa7.66□□□□□ -1.18
VPS41-210ENST00000462429 KCTD17Q8N5Z5 321 aa7.66□□□□□ -1.18
VPS41-210ENST00000462429 KDF1Q8NAX2 398 aaPredicted RBP7.66□□□□□ -1.18
VPS41-210ENST00000462429 TSEN2Q8NCE0 465 aaKnown RBP7.66□□□□□ -1.18
VPS41-210ENST00000462429 CNKSR1Q969H4 720 aa7.66□□□□□ -1.18
VPS41-210ENST00000462429 XAGE2Q96GT9 111 aa7.66□□□□□ -1.18
VPS41-210ENST00000462429 SLC4A9Q96Q91 983 aa7.66□□□□□ -1.18
VPS41-210ENST00000462429 ESYT1Q9BSJ8 1104 aa7.66□□□□□ -1.18
VPS41-210ENST00000462429 SERTAD1Q9UHV2 236 aa7.66□□□□□ -1.18
VPS41-210ENST00000462429 MEN1O00255 615 aa7.65□□□□□ -1.18
VPS41-210ENST00000462429 BRD1O95696 1058 aa7.65□□□□□ -1.18
VPS41-210ENST00000462429 SMCPP49901 116 aaPredicted RBP7.65□□□□□ -1.18
VPS41-210ENST00000462429 LINC00528Q8N1L1 170 aa7.65□□□□□ -1.18
VPS41-210ENST00000462429 ZNF395Q9H8N7 513 aaPredicted RBP7.65□□□□□ -1.18
VPS41-210ENST00000462429 SMTNP53814 917 aa7.64□□□□□ -1.19
VPS41-210ENST00000462429 TLR1Q15399 786 aa7.64□□□□□ -1.19
VPS41-210ENST00000462429 A6NJY4 79 aa7.63□□□□□ -1.19
VPS41-210ENST00000462429 PATL2C9JE40 543 aaKnown RBP7.63□□□□□ -1.19
VPS41-210ENST00000462429 AXIN1O15169 862 aa7.63□□□□□ -1.19
VPS41-210ENST00000462429 SPINT1O43278 529 aa7.63□□□□□ -1.19
VPS41-210ENST00000462429 PRMT3O60678 531 aa7.63□□□□□ -1.19
VPS41-210ENST00000462429 BMP2P12643 396 aa7.63□□□□□ -1.19
VPS41-210ENST00000462429 ATP2B4P23634 1241 aa7.63□□□□□ -1.19
VPS41-210ENST00000462429 SCARF1Q14162 830 aa7.63□□□□□ -1.19
VPS41-210ENST00000462429 MRPL14Q6P1L8 145 aaKnown RBP7.63□□□□□ -1.19
VPS41-210ENST00000462429 TNS4Q8IZW8 715 aa7.63□□□□□ -1.19
VPS41-210ENST00000462429 GTF2E1P29083 439 aaPredicted RBP7.62□□□□□ -1.19
VPS41-210ENST00000462429 GPC1P35052 558 aa7.62□□□□□ -1.19
VPS41-210ENST00000462429 CENPCQ03188 943 aa7.62□□□□□ -1.19
VPS41-210ENST00000462429 MTFR1Q15390 333 aa7.62□□□□□ -1.19
VPS41-210ENST00000462429 AEBP1Q8IUX7 1158 aa7.62□□□□□ -1.19
VPS41-210ENST00000462429 CRIPAKQ8N1N5 446 aa7.62□□□□□ -1.19
VPS41-210ENST00000462429 NBPF15Q8N660 670 aa7.62□□□□□ -1.19
VPS41-210ENST00000462429 IRX2Q9BZI1 471 aaPredicted RBP7.62□□□□□ -1.19
VPS41-210ENST00000462429 HRH3Q9Y5N1 445 aa7.62□□□□□ -1.19
VPS41-210ENST00000462429 CDK2AP1O14519 115 aa7.61□□□□□ -1.19
VPS41-210ENST00000462429 IGFBP4P22692 258 aa7.61□□□□□ -1.19
VPS41-210ENST00000462429 SSFA2P28290 1259 aa7.61□□□□□ -1.19
VPS41-210ENST00000462429 WEE1P30291 646 aa7.61□□□□□ -1.19
VPS41-210ENST00000462429 EPHA4P54764 986 aa7.61□□□□□ -1.19
VPS41-210ENST00000462429 KCNA1Q09470 495 aa7.61□□□□□ -1.19
VPS41-210ENST00000462429 C6orf118Q5T5N4 469 aa7.61□□□□□ -1.19
VPS41-210ENST00000462429 GAS2L2Q8NHY3 880 aa7.61□□□□□ -1.19
VPS41-210ENST00000462429 PRIMPOLQ96LW4 560 aa7.61□□□□□ -1.19
VPS41-210ENST00000462429 INSM2Q96T92 566 aaPredicted RBP7.61□□□□□ -1.19
VPS41-210ENST00000462429 POLMQ9NP87 494 aaPredicted RBP7.61□□□□□ -1.19
VPS41-210ENST00000462429 SCHIP1Q9P0W5 487 aaPredicted RBP7.61□□□□□ -1.19
VPS41-210ENST00000462429 ZBTB7CA1YPR0 619 aa7.6□□□□□ -1.19
VPS41-210ENST00000462429 LGR5O75473 907 aa7.6□□□□□ -1.19
VPS41-210ENST00000462429 OCLNQ16625 522 aa7.6□□□□□ -1.19
VPS41-210ENST00000462429 SLC27A3Q5K4L6 730 aa7.6□□□□□ -1.19
VPS41-210ENST00000462429 SLC9A9Q8IVB4 645 aa7.6□□□□□ -1.19
VPS41-210ENST00000462429 SCG3Q8WXD2 468 aaKnown RBP7.6□□□□□ -1.19
VPS41-210ENST00000462429 ZSCAN10Q96SZ4 725 aaPredicted RBP7.6□□□□□ -1.19
VPS41-210ENST00000462429 FHDC1Q9C0D6 1143 aaPredicted RBP7.6□□□□□ -1.19
VPS41-210ENST00000462429 TSPAN10Q9H1Z9 355 aaPredicted RBP7.6□□□□□ -1.19
VPS41-210ENST00000462429 CXXC1Q9P0U4 656 aaPredicted RBP7.6□□□□□ -1.19
VPS41-210ENST00000462429 SLAIN2Q9P270 581 aa7.6□□□□□ -1.19
VPS41-210ENST00000462429 CHMP3Q9Y3E7 222 aa7.6□□□□□ -1.19
VPS41-210ENST00000462429 BMP1P13497 986 aa7.59□□□□□ -1.19
VPS41-210ENST00000462429 RNF144AP50876 292 aaPredicted RBP7.59□□□□□ -1.19
VPS41-210ENST00000462429 FOXK2Q01167 660 aa7.59□□□□□ -1.19
VPS41-210ENST00000462429 C1orf216Q8TAB5 229 aa7.59□□□□□ -1.19
VPS41-210ENST00000462429 MTMR7Q9Y216 660 aa7.59□□□□□ -1.19
VPS41-210ENST00000462429 ATAD2Q6PL18 1390 aa7.59□□□□□ -1.2
VPS41-210ENST00000462429 FOXO3O43524 673 aa7.58□□□□□ -1.2
VPS41-210ENST00000462429 PPP1R12BO60237 982 aaPredicted RBP7.58□□□□□ -1.2
VPS41-210ENST00000462429 PSMA6P60900 246 aaKnown RBP7.58□□□□□ -1.2
VPS41-210ENST00000462429 GNASQ5JWF2 1037 aa7.58□□□□□ -1.2
VPS41-210ENST00000462429 TMEM214Q6NUQ4 689 aaKnown RBP7.58□□□□□ -1.2
VPS41-210ENST00000462429 PPARGC1BQ86YN6 1023 aaKnown RBP7.58□□□□□ -1.2
VPS41-210ENST00000462429 VTI1AQ96AJ9 217 aa7.58□□□□□ -1.2
VPS41-210ENST00000462429 PURBQ96QR8 312 aaKnown RBP7.58□□□□□ -1.2
VPS41-210ENST00000462429 ARID4AP29374 1257 aaPredicted RBP7.57□□□□□ -1.2
VPS41-210ENST00000462429 CTSOP43234 321 aaPredicted RBP7.57□□□□□ -1.2
VPS41-210ENST00000462429 TBCELQ5QJ74 424 aa7.57□□□□□ -1.2
VPS41-210ENST00000462429 TRIM46Q7Z4K8 759 aa7.57□□□□□ -1.2
VPS41-210ENST00000462429 CHMP7Q8WUX9 453 aaPredicted RBP7.57□□□□□ -1.2
VPS41-210ENST00000462429 NIFKQ9BYG3 293 aaKnown RBP7.57□□□□□ -1.2
VPS41-210ENST00000462429 GRIP2Q9C0E4 1043 aa7.57□□□□□ -1.2
VPS41-210ENST00000462429 AAASQ9NRG9 546 aa7.57□□□□□ -1.2
VPS41-210ENST00000462429 IQSEC3Q9UPP2 1182 aaPredicted RBP7.57□□□□□ -1.2
VPS41-210ENST00000462429 TTLL8A6PVC2 850 aa7.56□□□□□ -1.2
VPS41-210ENST00000462429 C21orf2O43822 256 aa7.56□□□□□ -1.2
VPS41-210ENST00000462429 FOXD4L5Q5VV16 416 aaPredicted RBP7.56□□□□□ -1.2
VPS41-210ENST00000462429 PHLDB3Q6NSJ2 640 aa7.56□□□□□ -1.2
VPS41-210ENST00000462429 STAG2Q8N3U4 1231 aa7.56□□□□□ -1.2
VPS41-210ENST00000462429 CCER1Q8TC90 406 aaPredicted RBP7.56□□□□□ -1.2
VPS41-210ENST00000462429 RHBDD1Q8TEB9 315 aa7.56□□□□□ -1.2
VPS41-210ENST00000462429 UTP3Q9NQZ2 479 aaKnown RBP eCLIP7.56□□□□□ -1.2
VPS41-210ENST00000462429 CABP1Q9NZU7 370 aa7.56□□□□□ -1.2
VPS41-210ENST00000462429 SERTM1A2A2V5 107 aa7.55□□□□□ -1.2
VPS41-210ENST00000462429 ST8SIA5O15466 376 aa7.55□□□□□ -1.2
VPS41-210ENST00000462429 PTCD1O75127 700 aaKnown RBP7.55□□□□□ -1.2
VPS41-210ENST00000462429 FKBP5Q13451 457 aaPredicted RBP7.55□□□□□ -1.2
VPS41-210ENST00000462429 TAS1R3Q7RTX0 852 aa7.55□□□□□ -1.2
VPS41-210ENST00000462429 LYSMD3Q7Z3D4 306 aa7.55□□□□□ -1.2
VPS41-210ENST00000462429 RNF217Q8TC41 542 aa7.55□□□□□ -1.2
VPS41-210ENST00000462429 COL26A1Q96A83 441 aa7.55□□□□□ -1.2
VPS41-210ENST00000462429 ZFP42Q96MM3 310 aa7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms