RNA–Protein interactions for RNA: ENST00000461874.1

VARS-220, Transcript of valyl-tRNA synthetase, humanhuman

TSL 5

Gene VARS, Length 845 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-220ENST00000461874 ITPK1Q13572 414 aa25.67■■□□□ 1.7
VARS-220ENST00000461874 AMIGO3Q86WK7 504 aa25.67■■□□□ 1.7
VARS-220ENST00000461874 YY1P25490 414 aa25.66■■□□□ 1.7
VARS-220ENST00000461874 CABP4P57796 275 aa25.66■■□□□ 1.7
VARS-220ENST00000461874 DIAPH1O60610 1272 aaKnown RBP25.65■■□□□ 1.7
VARS-220ENST00000461874 MSL1Q68DK7 614 aa25.65■■□□□ 1.7
VARS-220ENST00000461874 CNGB1Q14028 1251 aaPredicted RBP25.64■■□□□ 1.7
VARS-220ENST00000461874 KLHL34Q8N239 644 aa25.64■■□□□ 1.7
VARS-220ENST00000461874 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP25.63■■□□□ 1.69
VARS-220ENST00000461874 HMOX1P09601 288 aa25.63■■□□□ 1.69
VARS-220ENST00000461874 SMIM5Q71RC9 77 aa25.63■■□□□ 1.69
VARS-220ENST00000461874 PHF14O94880 888 aa25.62■■□□□ 1.69
VARS-220ENST00000461874 SSFA2P28290 1259 aa25.62■■□□□ 1.69
VARS-220ENST00000461874 SLC4A9Q96Q91 983 aa25.62■■□□□ 1.69
VARS-220ENST00000461874 UTRNP46939 3433 aa25.62■■□□□ 1.69
VARS-220ENST00000461874 AKAP4Q5JQC9 854 aa25.61■■□□□ 1.69
VARS-220ENST00000461874 RBM42Q9BTD8 480 aaKnown RBP25.61■■□□□ 1.69
VARS-220ENST00000461874 NFATC2IPQ8NCF5 419 aa25.6■■□□□ 1.69
VARS-220ENST00000461874 GNPATO15228 680 aa25.59■■□□□ 1.69
VARS-220ENST00000461874 NLGN2Q8NFZ4 835 aa25.58■■□□□ 1.69
VARS-220ENST00000461874 UBR3Q6ZT12 1888 aa25.57■■□□□ 1.68
VARS-220ENST00000461874 COL3A1P02461 1466 aaPredicted RBP25.56■■□□□ 1.68
VARS-220ENST00000461874 GPR162Q16538 588 aa25.55■■□□□ 1.68
VARS-220ENST00000461874 MTHFSDQ2M296 383 aaKnown RBP25.55■■□□□ 1.68
VARS-220ENST00000461874 RC3H1Q5TC82 1133 aaKnown RBP25.55■■□□□ 1.68
VARS-220ENST00000461874 LGR6Q9HBX8 967 aa25.55■■□□□ 1.68
VARS-220ENST00000461874 PTCD1O75127 700 aaKnown RBP25.54■■□□□ 1.68
VARS-220ENST00000461874 RNMTO43148 476 aaKnown RBP25.53■■□□□ 1.68
VARS-220ENST00000461874 SLC52A2Q9HAB3 445 aa25.53■■□□□ 1.68
VARS-220ENST00000461874 RTCBQ9Y3I0 505 aaKnown RBP25.53■■□□□ 1.68
VARS-220ENST00000461874 ZNF831Q5JPB2 1677 aa25.52■■□□□ 1.68
VARS-220ENST00000461874 U2SURPO15042 1029 aaKnown RBP25.52■■□□□ 1.68
VARS-220ENST00000461874 CD2APQ9Y5K6 639 aa25.52■■□□□ 1.68
VARS-220ENST00000461874 CNTNAP4Q9C0A0 1308 aa25.52■■□□□ 1.68
VARS-220ENST00000461874 TRAPPC3LQ5T215 181 aa25.51■■□□□ 1.67
VARS-220ENST00000461874 RPS6KA4O75676 772 aa25.49■■□□□ 1.67
VARS-220ENST00000461874 ADRA2BP18089 450 aa25.49■■□□□ 1.67
VARS-220ENST00000461874 PELP1Q8IZL8 1130 aaKnown RBP25.49■■□□□ 1.67
VARS-220ENST00000461874 SCN11AQ9UI33 1791 aa25.49■■□□□ 1.67
VARS-220ENST00000461874 CFAP53Q96M91 514 aa25.48■■□□□ 1.67
VARS-220ENST00000461874 GOLGB1Q14789 3259 aaKnown RBP25.48■■□□□ 1.67
VARS-220ENST00000461874 ARHGEF1Q92888 912 aaKnown RBP25.47■■□□□ 1.67
VARS-220ENST00000461874 PPP2R1AP30153 589 aa25.46■■□□□ 1.67
VARS-220ENST00000461874 MRC1P22897 1456 aa25.46■■□□□ 1.67
VARS-220ENST00000461874 CRKLP46109 303 aaKnown RBP25.45■■□□□ 1.66
VARS-220ENST00000461874 COL5A3P25940 1745 aaPredicted RBP25.44■■□□□ 1.66
VARS-220ENST00000461874 SLC39A6Q13433 755 aa25.44■■□□□ 1.66
VARS-220ENST00000461874 GAS2L2Q8NHY3 880 aa25.44■■□□□ 1.66
VARS-220ENST00000461874 MMP10P09238 476 aa25.43■■□□□ 1.66
VARS-220ENST00000461874 YBX3P16989 372 aaKnown RBP eCLIP25.43■■□□□ 1.66
VARS-220ENST00000461874 RFC4P35249 363 aa25.43■■□□□ 1.66
VARS-220ENST00000461874 NLGN1Q8N2Q7 840 aa25.43■■□□□ 1.66
VARS-220ENST00000461874 NUDCQ9Y266 331 aa25.42■■□□□ 1.66
VARS-220ENST00000461874 ADAMTS7Q9UKP4 1686 aa25.42■■□□□ 1.66
VARS-220ENST00000461874 MYH14Q7Z406 1995 aaKnown RBP25.42■■□□□ 1.66
VARS-220ENST00000461874 GNAT3A8MTJ3 354 aa25.41■■□□□ 1.66
VARS-220ENST00000461874 GRIN3BO60391 1043 aa25.41■■□□□ 1.66
VARS-220ENST00000461874 GYS1P13807 737 aa25.41■■□□□ 1.66
VARS-220ENST00000461874 INTS5Q6P9B9 1019 aaKnown RBP25.41■■□□□ 1.66
VARS-220ENST00000461874 DNAJC10Q8IXB1 793 aa25.41■■□□□ 1.66
VARS-220ENST00000461874 RSPH6AQ9H0K4 717 aa25.41■■□□□ 1.66
VARS-220ENST00000461874 ZNF784Q8NCA9 323 aaPredicted RBP25.4■■□□□ 1.66
VARS-220ENST00000461874 IL17REQ8NFR9 667 aa25.4■■□□□ 1.66
VARS-220ENST00000461874 PHACTR3Q96KR7 559 aa25.4■■□□□ 1.66
VARS-220ENST00000461874 PRKAR2BP31323 418 aa25.39■■□□□ 1.66
VARS-220ENST00000461874 CICQ96RK0 1608 aaPredicted RBP25.38■■□□□ 1.65
VARS-220ENST00000461874 CHD4Q14839 1912 aa25.38■■□□□ 1.65
VARS-220ENST00000461874 TJP1Q07157 1748 aa25.37■■□□□ 1.65
VARS-220ENST00000461874 U2AF1L5P0DN76 240 aaPredicted RBP25.37■■□□□ 1.65
VARS-220ENST00000461874 CYP19A1P11511 503 aaPredicted RBP25.37■■□□□ 1.65
VARS-220ENST00000461874 U2AF1Q01081 240 aaKnown RBP eCLIP25.37■■□□□ 1.65
VARS-220ENST00000461874 CCDC87Q9NVE4 849 aa25.37■■□□□ 1.65
VARS-220ENST00000461874 VSIG10Q8N0Z9 540 aa25.36■■□□□ 1.65
VARS-220ENST00000461874 KCPQ6ZWJ8 1503 aa25.36■■□□□ 1.65
VARS-220ENST00000461874 TEFQ10587 303 aa25.35■■□□□ 1.65
VARS-220ENST00000461874 FCHSD2O94868 740 aa25.34■■□□□ 1.65
VARS-220ENST00000461874 SRP68Q9UHB9 627 aaKnown RBP25.34■■□□□ 1.65
VARS-220ENST00000461874 USP42Q9H9J4 1324 aaKnown RBP25.34■■□□□ 1.65
VARS-220ENST00000461874 TTC5Q8N0Z6 440 aa25.33■■□□□ 1.65
VARS-220ENST00000461874 SOS1Q07889 1333 aaPredicted RBP25.33■■□□□ 1.64
VARS-220ENST00000461874 PARP3Q9Y6F1 533 aa25.32■■□□□ 1.64
VARS-220ENST00000461874 VIRMAQ69YN4 1812 aaKnown RBP25.32■■□□□ 1.64
VARS-220ENST00000461874 CEMIPQ8WUJ3 1361 aa25.31■■□□□ 1.64
VARS-220ENST00000461874 FKBP8Q14318 412 aa25.31■■□□□ 1.64
VARS-220ENST00000461874 ZNF790Q6PG37 636 aa25.31■■□□□ 1.64
VARS-220ENST00000461874 ZNF496Q96IT1 587 aaPredicted RBP25.3■■□□□ 1.64
VARS-220ENST00000461874 C4AP0C0L4 1744 aa25.29■■□□□ 1.64
VARS-220ENST00000461874 TGFB2P61812 414 aa25.29■■□□□ 1.64
VARS-220ENST00000461874 WWC3Q9ULE0 1092 aa25.29■■□□□ 1.64
VARS-220ENST00000461874 ZBTB1Q9Y2K1 713 aa25.29■■□□□ 1.64
VARS-220ENST00000461874 C10orf71Q711Q0 1435 aa25.29■■□□□ 1.64
VARS-220ENST00000461874 ZPR1O75312 459 aa25.28■■□□□ 1.64
VARS-220ENST00000461874 STARD3NLO95772 234 aa25.27■■□□□ 1.64
VARS-220ENST00000461874 PXDNLA1KZ92 1463 aa25.27■■□□□ 1.64
VARS-220ENST00000461874 UBR2Q8IWV8 1755 aa25.26■■□□□ 1.63
VARS-220ENST00000461874 DDR1Q08345 913 aa25.26■■□□□ 1.63
VARS-220ENST00000461874 USPL1Q5W0Q7 1092 aa25.26■■□□□ 1.63
VARS-220ENST00000461874 NARFQ9UHQ1 456 aa25.26■■□□□ 1.63
VARS-220ENST00000461874 HEG1Q9ULI3 1381 aa25.26■■□□□ 1.63
VARS-220ENST00000461874 A0A0G2JLW4 131 aa25.25■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms