RNA–Protein interactions for RNA: ENST00000461872.6

SYNE1-216, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,075 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-216ENST00000461872 PTCH1Q13635 1447 aa8.35□□□□□ -1.07
SYNE1-216ENST00000461872 UGGT1Q9NYU2 1555 aa8.35□□□□□ -1.07
SYNE1-216ENST00000461872 NRXN1Q9ULB1 1477 aa8.35□□□□□ -1.07
SYNE1-216ENST00000461872 CDKL5O76039 1030 aa8.35□□□□□ -1.07
SYNE1-216ENST00000461872 SRRTQ9BXP5 876 aaKnown RBP8.35□□□□□ -1.07
SYNE1-216ENST00000461872 NPATQ14207 1427 aa8.35□□□□□ -1.07
SYNE1-216ENST00000461872 BICD2Q8TD16 824 aa8.34□□□□□ -1.07
SYNE1-216ENST00000461872 ZCCHC11Q5TAX3 1644 aaKnown RBP8.34□□□□□ -1.07
SYNE1-216ENST00000461872 NUP62CLQ9H1M0 184 aa8.34□□□□□ -1.07
SYNE1-216ENST00000461872 CLTCL1P53675 1640 aa8.34□□□□□ -1.07
SYNE1-216ENST00000461872 SMAP1Q8IYB5 467 aaPredicted RBP8.34□□□□□ -1.07
SYNE1-216ENST00000461872 ZSCAN16Q9H4T2 348 aaPredicted RBP8.34□□□□□ -1.07
SYNE1-216ENST00000461872 YTHDC2Q9H6S0 1430 aaKnown RBP8.34□□□□□ -1.07
SYNE1-216ENST00000461872 ABCC4O15439 1325 aa8.34□□□□□ -1.07
SYNE1-216ENST00000461872 NPHP3Q7Z494 1330 aa8.34□□□□□ -1.07
SYNE1-216ENST00000461872 INO80Q9ULG1 1556 aaPredicted RBP8.34□□□□□ -1.07
SYNE1-216ENST00000461872 QRICH2Q9H0J4 1663 aa8.34□□□□□ -1.07
SYNE1-216ENST00000461872 SMTNL1A8MU46 457 aa8.34□□□□□ -1.07
SYNE1-216ENST00000461872 POTEB2H3BUK9 544 aa8.34□□□□□ -1.07
SYNE1-216ENST00000461872 ZSCAN23Q3MJ62 389 aa8.34□□□□□ -1.07
SYNE1-216ENST00000461872 TSR1Q2NL82 804 aaKnown RBP8.33□□□□□ -1.08
SYNE1-216ENST00000461872 TRIM5Q9C035 493 aa8.33□□□□□ -1.08
SYNE1-216ENST00000461872 IPO7O95373 1038 aaKnown RBP8.33□□□□□ -1.08
SYNE1-216ENST00000461872 CTNNA3Q9UI47 895 aa8.33□□□□□ -1.08
SYNE1-216ENST00000461872 FAM200AQ8TCP9 573 aa8.33□□□□□ -1.08
SYNE1-216ENST00000461872 MCM3P25205 808 aa8.33□□□□□ -1.08
SYNE1-216ENST00000461872 RIMS2Q9UQ26 1411 aa8.33□□□□□ -1.08
SYNE1-216ENST00000461872 APBB1O00213 710 aa8.33□□□□□ -1.08
SYNE1-216ENST00000461872 ERLIN1O75477 346 aa8.33□□□□□ -1.08
SYNE1-216ENST00000461872 AK7Q96M32 723 aa8.33□□□□□ -1.08
SYNE1-216ENST00000461872 CABP1Q9NZU7 370 aa8.33□□□□□ -1.08
SYNE1-216ENST00000461872 TNNT3P45378 269 aaPredicted RBP8.33□□□□□ -1.08
SYNE1-216ENST00000461872 HSP90B2PQ58FF3 399 aa8.33□□□□□ -1.08
SYNE1-216ENST00000461872 TNMDQ9H2S6 317 aa8.33□□□□□ -1.08
SYNE1-216ENST00000461872 SLC4A2P04920 1241 aa8.32□□□□□ -1.08
SYNE1-216ENST00000461872 A0A1W2PP64 1363 aa8.32□□□□□ -1.08
SYNE1-216ENST00000461872 AMOTQ4VCS5 1084 aa8.32□□□□□ -1.08
SYNE1-216ENST00000461872 MRPL50Q8N5N7 158 aaKnown RBP8.32□□□□□ -1.08
SYNE1-216ENST00000461872 GBP3Q9H0R5 595 aa8.32□□□□□ -1.08
SYNE1-216ENST00000461872 SYNE3Q6ZMZ3 975 aa8.32□□□□□ -1.08
SYNE1-216ENST00000461872 CACNA1FO60840 1977 aa8.32□□□□□ -1.08
SYNE1-216ENST00000461872 WASLO00401 505 aaPredicted RBP8.32□□□□□ -1.08
SYNE1-216ENST00000461872 PLEKHO1Q53GL0 409 aaPredicted RBP8.32□□□□□ -1.08
SYNE1-216ENST00000461872 CCDC94Q9BW85 323 aaPredicted RBP8.32□□□□□ -1.08
SYNE1-216ENST00000461872 FAM107BQ9H098 131 aa8.32□□□□□ -1.08
SYNE1-216ENST00000461872 CHD1O14646 1710 aa8.32□□□□□ -1.08
SYNE1-216ENST00000461872 JAKMIP3Q5VZ66 844 aa8.32□□□□□ -1.08
SYNE1-216ENST00000461872 MNS1Q8NEH6 495 aa8.32□□□□□ -1.08
SYNE1-216ENST00000461872 VPS37CA5D8V6 355 aaPredicted RBP8.32□□□□□ -1.08
SYNE1-216ENST00000461872 TRIM29Q14134 588 aa8.32□□□□□ -1.08
SYNE1-216ENST00000461872 IQCEQ6IPM2 695 aa8.32□□□□□ -1.08
SYNE1-216ENST00000461872 OLFM4Q6UX06 510 aa8.32□□□□□ -1.08
SYNE1-216ENST00000461872 ZNF771Q7L3S4 317 aaPredicted RBP8.32□□□□□ -1.08
SYNE1-216ENST00000461872 C14orf37Q86TY3 774 aa8.32□□□□□ -1.08
SYNE1-216ENST00000461872 CPLX1O14810 134 aa8.32□□□□□ -1.08
SYNE1-216ENST00000461872 ZSCAN12O43309 604 aa8.32□□□□□ -1.08
SYNE1-216ENST00000461872 TRDNQ13061 729 aa8.32□□□□□ -1.08
SYNE1-216ENST00000461872 SAFBQ15424 915 aaKnown RBP eCLIP8.32□□□□□ -1.08
SYNE1-216ENST00000461872 KIF18AQ8NI77 898 aa8.32□□□□□ -1.08
SYNE1-216ENST00000461872 EIF3JO75822 258 aaKnown RBP8.31□□□□□ -1.08
SYNE1-216ENST00000461872 SYCP1Q15431 976 aa8.31□□□□□ -1.08
SYNE1-216ENST00000461872 NEXMIFQ5QGS0 1516 aa8.31□□□□□ -1.08
SYNE1-216ENST00000461872 CALCOCO1Q9P1Z2 691 aa8.31□□□□□ -1.08
SYNE1-216ENST00000461872 ABCA6Q8N139 1617 aa8.31□□□□□ -1.08
SYNE1-216ENST00000461872 SETQ01105 290 aaPredicted RBP8.31□□□□□ -1.08
SYNE1-216ENST00000461872 SYCE3A1L190 88 aa8.31□□□□□ -1.08
SYNE1-216ENST00000461872 TMEM132EQ6IEE7 984 aa8.31□□□□□ -1.08
SYNE1-216ENST00000461872 BLOC1S2Q6QNY1 142 aa8.31□□□□□ -1.08
SYNE1-216ENST00000461872 VWDEQ8N2E2 1590 aa8.31□□□□□ -1.08
SYNE1-216ENST00000461872 OSBPL3Q9H4L5 887 aa8.31□□□□□ -1.08
SYNE1-216ENST00000461872 FOXD4L1Q9NU39 408 aa8.31□□□□□ -1.08
SYNE1-216ENST00000461872 ANO10Q9NW15 660 aa8.31□□□□□ -1.08
SYNE1-216ENST00000461872 FILIP1Q7Z7B0 1213 aa8.31□□□□□ -1.08
SYNE1-216ENST00000461872 CCDC150Q8NCX0 1101 aa8.31□□□□□ -1.08
SYNE1-216ENST00000461872 KCNH5Q8NCM2 988 aa8.31□□□□□ -1.08
SYNE1-216ENST00000461872 FLT4P35916 1363 aa8.3□□□□□ -1.08
SYNE1-216ENST00000461872 SURF6O75683 361 aaKnown RBP8.3□□□□□ -1.08
SYNE1-216ENST00000461872 EVI5LQ96CN4 794 aa8.3□□□□□ -1.08
SYNE1-216ENST00000461872 PYM1Q9BRP8 204 aaKnown RBP8.3□□□□□ -1.08
SYNE1-216ENST00000461872 NCOA3Q9Y6Q9 1424 aa8.3□□□□□ -1.08
SYNE1-216ENST00000461872 FYB1O15117 783 aa8.3□□□□□ -1.08
SYNE1-216ENST00000461872 STX6O43752 255 aa8.3□□□□□ -1.08
SYNE1-216ENST00000461872 LARP1BQ659C4 914 aaKnown RBP8.3□□□□□ -1.08
SYNE1-216ENST00000461872 SPATA32Q96LK8 384 aa8.3□□□□□ -1.08
SYNE1-216ENST00000461872 CARD14Q9BXL6 1004 aa8.3□□□□□ -1.08
SYNE1-216ENST00000461872 PDRG1Q9NUG6 133 aa8.3□□□□□ -1.08
SYNE1-216ENST00000461872 DLC1Q96QB1 1528 aa8.3□□□□□ -1.08
SYNE1-216ENST00000461872 ALDH1L1O75891 902 aa8.3□□□□□ -1.08
SYNE1-216ENST00000461872 TM6SF1Q9BZW5 370 aa8.3□□□□□ -1.08
SYNE1-216ENST00000461872 XBP1P17861 261 aa8.3□□□□□ -1.08
SYNE1-216ENST00000461872 GABPB1Q06547 395 aaPredicted RBP8.3□□□□□ -1.08
SYNE1-216ENST00000461872 WASF1Q92558 559 aa8.3□□□□□ -1.08
SYNE1-216ENST00000461872 MBIPQ9NS73 344 aa8.3□□□□□ -1.08
SYNE1-216ENST00000461872 VAMP4O75379 141 aa8.3□□□□□ -1.08
SYNE1-216ENST00000461872 HDGFL1Q5TGJ6 251 aa8.3□□□□□ -1.08
SYNE1-216ENST00000461872 ZSCAN25Q6NSZ9 544 aa8.3□□□□□ -1.08
SYNE1-216ENST00000461872 GNAT3A8MTJ3 354 aa8.29□□□□□ -1.08
SYNE1-216ENST00000461872 SSFA2P28290 1259 aa8.29□□□□□ -1.08
SYNE1-216ENST00000461872 ZSCAN22P10073 491 aaPredicted RBP8.29□□□□□ -1.08
SYNE1-216ENST00000461872 GORABQ5T7V8 394 aa8.29□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms