RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 FER1L4A9Z1Z3 1794 aa11.73□□□□□ -0.53
USP54-208ENST00000461520 NFX1Q12986 1120 aaKnown RBP11.73□□□□□ -0.53
USP54-208ENST00000461520 PPP1R26Q5T8A7 1209 aaPredicted RBP11.73□□□□□ -0.53
USP54-208ENST00000461520 YEATS2Q9ULM3 1422 aa11.73□□□□□ -0.53
USP54-208ENST00000461520 EMILIN1Q9Y6C2 1016 aa11.73□□□□□ -0.53
USP54-208ENST00000461520 LRRIQ1Q96JM4 1722 aa11.72□□□□□ -0.53
USP54-208ENST00000461520 SOBPA7XYQ1 873 aa11.71□□□□□ -0.53
USP54-208ENST00000461520 TERTO14746 1132 aaKnown RBP11.71□□□□□ -0.53
USP54-208ENST00000461520 MLECQ14165 292 aa11.71□□□□□ -0.53
USP54-208ENST00000461520 MEIOBQ8N635 442 aa11.71□□□□□ -0.53
USP54-208ENST00000461520 CDV3Q9UKY7 258 aaKnown RBP11.71□□□□□ -0.53
USP54-208ENST00000461520 ARHGAP5Q13017 1502 aa11.7□□□□□ -0.54
USP54-208ENST00000461520 ZNF518AQ6AHZ1 1483 aa11.7□□□□□ -0.54
USP54-208ENST00000461520 INTS6LQ5JSJ4 861 aaKnown RBP11.7□□□□□ -0.54
USP54-208ENST00000461520 FYCO1Q9BQS8 1478 aa11.7□□□□□ -0.54
USP54-208ENST00000461520 BMP2P12643 396 aa11.69□□□□□ -0.54
USP54-208ENST00000461520 CBLBQ13191 982 aa11.69□□□□□ -0.54
USP54-208ENST00000461520 DZIP3Q86Y13 1208 aaKnown RBP11.69□□□□□ -0.54
USP54-208ENST00000461520 ATP10AO60312 1499 aa11.69□□□□□ -0.54
USP54-208ENST00000461520 RAB15P59190 212 aa11.68□□□□□ -0.54
USP54-208ENST00000461520 LINC00528Q8N1L1 170 aa11.68□□□□□ -0.54
USP54-208ENST00000461520 BANK1Q8NDB2 785 aa11.68□□□□□ -0.54
USP54-208ENST00000461520 SNRKQ9NRH2 765 aa11.68□□□□□ -0.54
USP54-208ENST00000461520 C9orf84Q5VXU9 1444 aa11.68□□□□□ -0.54
USP54-208ENST00000461520 KDM5CP41229 1560 aa11.67□□□□□ -0.54
USP54-208ENST00000461520 UPP2O95045 317 aa11.67□□□□□ -0.54
USP54-208ENST00000461520 LCE2CQ5TA81 110 aa11.67□□□□□ -0.54
USP54-208ENST00000461520 AFAP1Q8N556 730 aa11.67□□□□□ -0.54
USP54-208ENST00000461520 MTMR14Q8NCE2 650 aa11.67□□□□□ -0.54
USP54-208ENST00000461520 PGPEP1Q9NXJ5 209 aa11.67□□□□□ -0.54
USP54-208ENST00000461520 VEGFBP49765 207 aa11.66□□□□□ -0.54
USP54-208ENST00000461520 NXF1Q9UBU9 619 aaKnown RBP11.66□□□□□ -0.54
USP54-208ENST00000461520 CDC42BPBQ9Y5S2 1711 aa11.66□□□□□ -0.54
USP54-208ENST00000461520 PREX1Q8TCU6 1659 aa11.65□□□□□ -0.54
USP54-208ENST00000461520 PREX2Q70Z35 1606 aa11.65□□□□□ -0.54
USP54-208ENST00000461520 ZBBXA8MT70 800 aa11.65□□□□□ -0.54
USP54-208ENST00000461520 FBXO45P0C2W1 286 aa11.65□□□□□ -0.54
USP54-208ENST00000461520 DHX9Q08211 1270 aaKnown RBP11.65□□□□□ -0.54
USP54-208ENST00000461520 NBPF20Q3BBV1 942 aa11.65□□□□□ -0.54
USP54-208ENST00000461520 TMPRSS4Q9NRS4 437 aa11.65□□□□□ -0.54
USP54-208ENST00000461520 ARHGEF12Q9NZN5 1544 aa11.65□□□□□ -0.55
USP54-208ENST00000461520 MLH3Q9UHC1 1453 aa11.64□□□□□ -0.55
USP54-208ENST00000461520 TSEN34Q9BSV6 310 aaKnown RBP11.64□□□□□ -0.55
USP54-208ENST00000461520 ABCC1P33527 1531 aa11.64□□□□□ -0.55
USP54-208ENST00000461520 Q6ZVU0 165 aa11.63□□□□□ -0.55
USP54-208ENST00000461520 TRAPPC8Q9Y2L5 1435 aa11.62□□□□□ -0.55
USP54-208ENST00000461520 MAN1A2O60476 641 aa11.62□□□□□ -0.55
USP54-208ENST00000461520 AGBL1Q96MI9 1066 aa11.62□□□□□ -0.55
USP54-208ENST00000461520 PCDHB9Q9Y5E1 797 aa11.62□□□□□ -0.55
USP54-208ENST00000461520 REREQ9P2R6 1566 aa11.62□□□□□ -0.55
USP54-208ENST00000461520 ERVH48-1M5A8F1 160 aa11.61□□□□□ -0.55
USP54-208ENST00000461520 CEBPAP49715 358 aaPredicted RBP11.61□□□□□ -0.55
USP54-208ENST00000461520 DIP2CQ9Y2E4 1556 aa11.61□□□□□ -0.55
USP54-208ENST00000461520 SOS2Q07890 1332 aaPredicted RBP11.6□□□□□ -0.55
USP54-208ENST00000461520 GPATCH8Q9UKJ3 1502 aaKnown RBP11.6□□□□□ -0.55
USP54-208ENST00000461520 CDC42BPAQ5VT25 1732 aa11.6□□□□□ -0.55
USP54-208ENST00000461520 ESPNB1AK53 854 aa11.6□□□□□ -0.55
USP54-208ENST00000461520 GPR37L1O60883 481 aa11.6□□□□□ -0.55
USP54-208ENST00000461520 STRCQ7RTU9 1775 aa11.59□□□□□ -0.55
USP54-208ENST00000461520 ITSN2Q9NZM3 1697 aa11.59□□□□□ -0.55
USP54-208ENST00000461520 MTUS2Q5JR59 1369 aa11.59□□□□□ -0.55
USP54-208ENST00000461520 GIGYF1O75420 1035 aaPredicted RBP11.59□□□□□ -0.55
USP54-208ENST00000461520 ZNF784Q8NCA9 323 aaPredicted RBP11.59□□□□□ -0.55
USP54-208ENST00000461520 SLC16A10Q8TF71 515 aa11.59□□□□□ -0.55
USP54-208ENST00000461520 DNMT3LQ9UJW3 386 aa11.59□□□□□ -0.55
USP54-208ENST00000461520 ZNF777Q9ULD5 760 aaPredicted RBP11.59□□□□□ -0.55
USP54-208ENST00000461520 NDUFB9Q9Y6M9 179 aa11.59□□□□□ -0.55
USP54-208ENST00000461520 CCNB3Q8WWL7 1395 aa11.58□□□□□ -0.56
USP54-208ENST00000461520 ABCA6Q8N139 1617 aa11.58□□□□□ -0.56
USP54-208ENST00000461520 RELBQ01201 579 aa11.58□□□□□ -0.56
USP54-208ENST00000461520 CFDP1Q9UEE9 299 aaPredicted RBP11.58□□□□□ -0.56
USP54-208ENST00000461520 AGLP35573 1532 aa11.58□□□□□ -0.56
USP54-208ENST00000461520 SAMD9LQ8IVG5 1584 aa11.58□□□□□ -0.56
USP54-208ENST00000461520 ADD1P35611 737 aaKnown RBP11.57□□□□□ -0.56
USP54-208ENST00000461520 NR1H3Q13133 447 aa11.57□□□□□ -0.56
USP54-208ENST00000461520 CEP162Q5TB80 1403 aa11.57□□□□□ -0.56
USP54-208ENST00000461520 KIAA1107Q9UPP5 1409 aa11.57□□□□□ -0.56
USP54-208ENST00000461520 PLEKHH2Q8IVE3 1493 aa11.57□□□□□ -0.56
USP54-208ENST00000461520 C3P01024 1663 aa11.56□□□□□ -0.56
USP54-208ENST00000461520 SETD1BQ9UPS6 1966 aaKnown RBP11.56□□□□□ -0.56
USP54-208ENST00000461520 FIGNL2A6NMB9 653 aa11.56□□□□□ -0.56
USP54-208ENST00000461520 TTLL8A6PVC2 850 aa11.56□□□□□ -0.56
USP54-208ENST00000461520 H3BM21 787 aa11.56□□□□□ -0.56
USP54-208ENST00000461520 SOCS7O14512 581 aa11.56□□□□□ -0.56
USP54-208ENST00000461520 LILRA1O75019 489 aa11.56□□□□□ -0.56
USP54-208ENST00000461520 UHRF1BP1Q6BDS2 1440 aa11.56□□□□□ -0.56
USP54-208ENST00000461520 NPAS3Q8IXF0 933 aa11.56□□□□□ -0.56
USP54-208ENST00000461520 KIDINS220Q9ULH0 1771 aa11.56□□□□□ -0.56
USP54-208ENST00000461520 SYCP2Q9BX26 1530 aa11.55□□□□□ -0.56
USP54-208ENST00000461520 SPINT1O43278 529 aa11.55□□□□□ -0.56
USP54-208ENST00000461520 HNRNPMP52272 730 aaKnown RBP eCLIP11.55□□□□□ -0.56
USP54-208ENST00000461520 ZNF395Q9H8N7 513 aaPredicted RBP11.55□□□□□ -0.56
USP54-208ENST00000461520 SPAG9O60271 1321 aaKnown RBP11.55□□□□□ -0.56
USP54-208ENST00000461520 WIPF1O43516 503 aa11.54□□□□□ -0.56
USP54-208ENST00000461520 ESF1Q9H501 851 aaKnown RBP11.54□□□□□ -0.56
USP54-208ENST00000461520 EHBP1L1Q8N3D4 1523 aa11.54□□□□□ -0.56
USP54-208ENST00000461520 ERBB4Q15303 1308 aa11.54□□□□□ -0.56
USP54-208ENST00000461520 APBB1O00213 710 aa11.53□□□□□ -0.56
USP54-208ENST00000461520 SEPT12Q8IYM1 358 aa11.53□□□□□ -0.56
USP54-208ENST00000461520 INSM2Q96T92 566 aaPredicted RBP11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms